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Halide, Halmar, Brinkman, Richard, and Ridd, Peter (2004) Designing bamboo wave attenuators for mangrove plantations. Indian Journal of Marine Sciences, 33 (3). pp. 220-225.

Nott, Jonathan (2004) The tsunami hypothesis—comparisons of the field evidence against the effects, on the Western Australian coast, of some of the most powerful storms on Earth. Marine Geology, 208 (1). pp. 1-12.

Da Silva, Eduardo Teixeira, Ridd, Michael, Klumpp, David, and Ridd, Peter (2004) Relative contribution of food and water to the Cd burden in Balanus amphitrite in an urban tidal creek discharging into the Great Barrier Reef lagoon. Estuarine, Coastal and Shelf Science , 60 (2). pp. 313-324.

Thomas, Séverine, and Ridd, Peter V. (2004) Review of methods to measure short time scale sediment accumulation. Marine Geology, 207 (1-4). pp. 95-114.

Thomas, Séverine, Ridd, Peter V., and Renagi, Ora (2003) Laboratory investigation on the effect of particle size, water flow and bottom surface roughness upon the response of an upward-pointing optical backscatter sensor to sediment accumulation. Continental Shelf Research, 23 (16). pp. 1545-1557.

Heron, S.F., and Ridd, P.V. (2003) The effect of water density variations on the tidal flushing of animal burrows. Estuarine, Coastal and Shelf Science , 58 (1). pp. 137-145.

Thomas, Severine, Ridd, Peter V., and Day, Geoff (2003) Turbidity regimes over fringing coral reefs near a mining site at Lihir island, Papua New Guinea. Marine Pollution Bulletin, 46 (8). pp. 1006-1014.

Halide, Halmar, Ridd, Peter V., Peterson, Eric L., and Foster, David (2003) Assessing sediment removal capacity of vegetated and non-vegetated settling ponds in prawn farms. Aquacultural Engineering, 27 (4). pp. 295-314.

Bryce, S., Larcombe, P., and Ridd, P.V. (2003) Hydrodynamic and geomorphological controls on suspended sediment transport in mangrove creek systems, a case study: Cocoa Creek, Townsville, Australia. Estuarine, Coastal and Shelf Science, 56 (3-4). pp. 415-431.

Duke, Norman, and Watkinson, Andrew J. (2002) Chlorophyll-deficient propagules of Avicennia marina and apparent longer term deterioration of mangrove fitness in oil-polluted sediments. Marine Pollution Bulletin, 44 (11). pp. 1269-1276.

Thomas, Severine, Ridd, Peter V., and Smith, Peter J. (2002) New instrumentation for sediment dynamics studies. Marine Technology Society Journal, 36 (1). pp. 55-58.

Heap, A.D., Dickens, G.R., and Stewart, L.K. (2001) Late Holocene sediment in Nara Inlet, central Great Barrier Reef platform, Australia: sediment accumulation on the middle shelf of a tropical mixed clastic/carbonate system. Marine Geology, 176 (1-4). pp. 39-54.

Larcombe, P., Costen, A.R., and Woolfe, K.J. (2001) The hydrodynamic and sedimentary setting of nearshore coral reefs, central Great Barrier Reef shelf, Australia: Paluma Shoals, a case study. Sedimentology Online, 48 (4). pp. 811-835.

Faithful, John W., and Griffiths, Dilwyn J. (2000) Turbid flow through a tropical reservoir (Lake Dalrymple, Queensland, Australia): responses to a summer storm event. Lakes and Reservoirs: research and management, 5 (4). pp. 231-247.

Book Chapter

Wang, X.H., and Andutta, F.P. (2013) Sediment transport dynamics in ports, estuaries and other coastal environments. In: Manning, Andrew J., (ed.) Sediment Transport Processes and their Modelling Applications. InTech, Croatia, pp. 3-36.

Wolanski, Eric, Andutta, Fernando, and Delhez, Eric (2012) Estuarine hydrology. In: Bengtsson, Lars, Herschy, Reginald W., and Fairbridge, Rhodes W., (eds.) Encyclopedia of Lakes and Reservoirs. Encyclopedia of Earth Sciences Series . Springer-Verlag, pp. 238-249.

Stieglitz, Thomas (2011) Submarine groundwater discharge. In: Hopley, David, (ed.) Encyclopedia of Modern Coral Reefs: structure, form and process. Encyclopedia of Earth Sciences . Springer, Dordrecht, Netherlands, p. 1052.

Report

Waterhouse, Jane, Schaffelke, Britta, Bartley, Rebecca, Eberhard, Rachel, Brodie, Jon, Star, Megan, Thorburn, Peter, Rolfe, John, Ronan, Mike, Taylor, Bruce, and Kroon, Frederieke (2017) 2017 Scientific Consensus Statement: land use impacts on the Great Barrier Reef water quality and ecosystem condition. Report. State of Queensland.

Schaffelke, Britta, Collier, Catherine, Kroon, Frederieke, Lough, Janice, McKenzie, Len, Ronan, Mike, Uthicke, Sven, and Brodie, Jon (2017) 2017 Scientific Consensus Statement: land use impacts on the Great Barrier Reef water quality and ecosystem condition, Chapter 1: the condition of coastal and marine ecosystems of the Great Barrioer Reef and their responses to water quality and disturbances. Report Section. State of Queensland.

Waterhouse, Jane, Schaffelke, Britta, Bartley, Rebecca, Eberhard, Rachel, Brodie, Jon, Star, Megan, Thorburn, Peter, Rolfe, John, Ronan, Mike, Taylor, Bruce, and Kroon, Frederieke (2017) 2017 Scientific Consensus Statement: land use impacts on the Great Barrier Reef water quality and ecosystem condition, Chapter 5: overview of key findings, management implications and knowledge gaps. Report Section. State of Queensland.

Wells, Jaclyn, Bryant, Catherine, and Rasheed, Michael (2016) Gladstone Western Basin BPAR Monitoring Update: May - August 2016. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Davies, Jaclyn, Shepherd, Lloyd, Bryant, Catherine, and Rasheed, Michael (2016) Gladstone Western Basin BPAR Monitoring Update: February - May 2016. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Bryant, Catherine, Davies, Jaclyn, and Rasheed, Michael (2016) Gladstone Western Basin BPAR Monitoring: November 2015 - February 2016. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Davies, Jaclyn, Bryant, Catherine, and Rasheed, Michael (2016) Gladstone Western Basin BPAR Monitoring: August - November 2015. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Collier, Catherine J., Langlois, Lucas, Zemoi, Rahel, Martin, Katherine, and McKenzie, Len (2016) Developing and refining biological indicators for condition assessments in an integrated monitoring program. Report. James Cook University, Cairns, Australia.

Collier, Catherine J., Chartrand, Katie, Honchin, Carol, Fletcher, Adam, and Rasheed, Michael (2016) Light thresholds for seagrasses of the GBRWHA: a synthesis and guiding document. Report. James Cook University, Cairns, Australia.

Davies, Jaclyn, Scott, Emma, Bryant, Catherine, and Rasheed, Michael (2015) Gladstone Western Basin and Channel Duplication BPAR Monitoring: May - August 2015. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Davies, Jaclyn, Taylor, Helen, Bryant, Catherine, and Rasheed, Michael (2015) Gladstone Western Basin and Channel Dupliaction BPAR Monitoring February/ March - May 2015. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Davies, Jaclyn, Scott, Emma, Bryant, Catherine, and Rasheed, Michael (2015) Gladstone Western Basin and Channel Duplication BPAR Monitoring: November 2014 - March 2015. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Devlin, Michelle, Fabricius, Katharina, Negri, Andrew, Brodie, Jon, Waterhouse, Jane, Uthicke, Sven, Collier, Catherine, Pressey, Bob, Augé, Amélie, Reid, Ben, Woodberry, Owen, Zhao, Jian-xin, Clarke, Tara, Pandolfi, John, and Bennett, John (2015) Water quality synthesis of NERP tropical ecosystems hub GBR water quality research outputs 2011-2014. Report. Reef and Rainforest Research Centre, Cairns, Australia.

Davies, Jaclyn, Bryant, Catherine, and Rasheed, Michael (2014) Gladstone Western Basin and Channel Dupliaction BPAR Monitoring August - October 2014. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Bryant, Catherine, and Reason, Carissa (2014) Gladstone Western Basin and Channel Dupliaction BPAR Monitoring May - July 2014. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Bryant, Catherine, and Tasker, Zoe (2014) Gladstone Western Basin Post Dredge BPAR Monitoring March - May 2014. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Bryant, C.V., and Tasker, Z. (2014) Gladstone Western Basin Post Dredge BPAR Monitoring December 2013 - February 2014. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Collier, Catherine J., Devlin, Michelle, Langlois, Lucas, McKenzie, Len J., Petus, Caroline, Da Silva, Eduardo Teixeira, McMahon, Kathryn, Adams, Matthew, O'Brien, Kate, Statton, John, and Waycott, Michelle (2014) Final report on thresholds and indicators of declining water quality as tools for tropical seagrass management. Report. James Cook University, Townsville, Australia.

McCormack, C.V., Rasheed, M.A., and Carter, A.B. (2012) Effects of Shading on Zostera capricorni in the Gladstone Western Basin During the Senescent Season: April - July 2012. Report. Department of Agriculture, Fisheries and Forestry, Cairns, QLD, Australia.

Brodie, Jon, Bainbridge, Zoe, and Lewis, Stephen (2008) Tully Murray Water Quality Monitory Strategy. Report. Australian Centre for Tropical Freshwater Research, Townsville, QLD, Australia.

Conference Item

Gharahjeh, Siamak, Situ, Rong, He, Yinghe, Lin, Wenxian, and Brown, Richard (2017) A review on ocean acidification as a result of shipping emissions in harbors. In: Proceedings of the Australasian Coasts & Ports 2017 Conference. pp. 483-486. From: Australasian Coasts & Ports 2017 Conference: working with nature, 21-23 June 2017, Cairns, QLD, Australia.

Robson, Barbara (2013) A systematic review of the treatment of phosphorus in biogeochemical and ecological models. In: Proceedings of the 20th International Congress on Modelling and Simulation. pp. 1784-1790. From: MODSIM2013: 20th International Congress on Modelling and Simulation, 1-6 December 2013, Adelaide, SA, Australia.

Heron, M.L., O'Shea, M., Murphy, J., Petersen, L., Mollaghan, D., and Prytz, A. (2013) Interpretation of VHF radar echoes from a complex flow field. In: Proceedings of Oceans 2013 MTS/IEEE San Diego. 6741266. pp. 1-4. From: Oceans 2013 MTS/IEEE San Diego, 23-27 September 2013, San Diego, CA, USA.

Heron, Malcolm L. (2013) Mapping currents at tidal turbine sites using VHF high resolution ocean radar. In: Proceedings of Oceans 2013 MTS/IEEE Bergen. From: Oceans 2013 MTS/IEEE Bergen, 10-13 June 2013, Bergen, Norway.

Wyatt, L.R., Atwater, D., Prytz, A., and Rehder, S. (2013) A comparison between SeaSonde and WERA HF radar current measurements. In: Proceedings of Oceans 2013 MTS/IEEE Bergen. From: Oceans 2013 MTS/IEEE Bergen, 10-13 June 2013, Bergen, Norway.

Heron, Mal, Wyatt, Lucy, Atwater, Daniel, and Prytz, Arnstein (2012) The Australian coastal ocean radar network: lessons learned in the establishment phase. In: OCEANS, 2012 - YEOSU. pp. 1-5. From: OCEANS, 2012 - YEOSU, 21-24 May 2012, Yeosu, Korea (South).

Wyatt, Lucy (2012) Use of HF radar for marine renewable applications. In: OCEANS, 2012 - YEOSU. pp. 1-5. From: OCEANS, 2012, 21-24 May 2012, Yeosu, Korea (South).

Heron, M.L., Savidge, Dana, and Blanton, Jack (2012) VHF radar measurements of flow in a salt marsh creek. In: Oceans. pp. 1-5. From: Oceans 2012, 14-19 October 2012, Hampton Road, VA, USA.

Heron, Mal, Prytz, Arnstein, and Steinberg, Craig (2011) Application of VHF high resolution radar to evaluating circulation around a seawater intake facility. In: Proccedings of OCEANS 2011. pp. 1-5. From: OCEANS 2011 MTS/IEEE Kona, 19-22 September 2011, Waikoloa, HI, USA.

Stieglitz, T., and Ridd, P. (2011) Of holes and depressions on the great barrier reef coast - and a physict's toolbox to study them. In: Abstracts from the Third Nereis Park Conference: benthic processes in a globally changing environment. pp. 29-30. From: Third Nereis Park Conference: benthic processes in a globally changing environment, 29-31 August 2011, Kristineberg, Sweden.

Stieglitz, T.C., Hancock, G., Clarke, J., and Cook, P.G. (2011) Radioisotopes and coastal research in the Great Barrier Reef. In: Abstracts from 11th Australasian Environmental Isotopes Conference and 4th Australasian Hydrogeology Research Conference. pp. 106-107. From: 11th Australasian Environmental Isotopes Conference and 4th Australasian Hydrogeology Research Conference, 12-14 July 2011, Cairns, QLD, Australia.

Stieglitz, T.C., Clark, J., and Hancock, G. (2011) Rapid seawater circulation through animal burrows in mangrove forests: a significant source of saline groundwater to the tropical coastal ocean. In: Goldschmidt Conference Abstracts. p. 1944. From: Goldschmidt 2011 Earth, Life and Fire, 14-19 August 2011, Prague, Czech Republic.

Stieglitz, T.C., Holliday, D., Ridd, P.V., Cook, P.G., and Read, W.W. (2010) Geological controls and tidal forcing of submarine groundwater discharge from a confined aquifer, Elim Beach, northeast Australia. In: Abstracts from ASLO & NABS 2010 Summer Meeting. p. 1. From: ASLO & NABS: 2010 Summer Meeting, 6 - 11 June 2010, Santa Fe, NM, USA.

Stieglitz, Thomas, van Beek, Pieter, and Souhaut, Marc (2010) Multi-tracer reconnaissance of submarine groundwater discharge along the French Mediterranean coast. In: Abstracts from Radium and Radon Isotapes as Environmental Tracers. p. 20. From: Radium and Radon Conference 2010: Radium and Radon Isotopes as Environmental Tracers, 14 - 19 March 2010, Jerusalem, Israel.

Bainbridge, Z.T., Brodie, J.E., Lewis, S.E., Waterhouse, J., and Wilkinson, S.N. (2009) Utilising catchment modelling as a tool for monitoring Reef Rescue outcomes in the Great Barrier Reef catchment area. In: Proceedings of 18th World IMACS Congress and MODSIM09 International Congress on Modelling and Simulation. pp. 3301-3307. From: 18th World IMACS Congress and MODSIM09 International Congress on Modelling and Simulation, 13–17 July 2009, Cairns, QLD, Australia.

Wyatt, Lucy R., Green, J. Jim, and Middleditch, Andrew (2008) Directional spectra comparisons between HF radar and a wave model. In: Proceedings of the IEEE/OES/CMTC 9th Working Conference on Current Measurement Technology. pp. 211-216. From: IEEE/OES/CMTC 9th Working Conference on Current Measurement Technology, 17-19 March 2008, Charlston, SC, USA.

Wyatt, L.R., Green, J.J., Middleditch, A., and Waters, J.C. (2008) HF radar directional spectra validation with buoy and model data. In: Proceedings of the 27th International Conference on Offshore Mechanics and Arctic Engineering (4) OMAE2008-57742. pp. 869-877. From: ASME 2008: 27th International Conference on Offshore Mechanics and Arctic Engineering, 15-20 June 2008, Estoril, Portugal.

Pinheiro Andutta, Fernando, de Miranda, Luiz Bruner, de Castro, Belmiro Mendes, Fontes, Roberto Fioravanti Carelli, and Ramos e Silva, Carlos Augusto (2008) Numerical simulation of the hydrodynamic in the Curimataú estuary, RN Brazil. In: Proceedings of the III Simposio Brasileiro de Oceanografia. pp. 545-558. From: III Simposio Brasileiro de Oceanografia, 2006, Sao Paulo, Brazil.

Dao, Vinh, Dux, Peter, and Morris, Peter (2007) Effectiveness of permeability-reducing admixtures in marine concrete. In: Proceedings of Concrete under severe conditions - environment and loading CONSEC'07 (1) pp. 449-456. From: 5th International conference on concrete under severe conditions of environment and loading, 4-6 June 2007, Tours, France.

Read, W.W., Stieglitz, T., and Holliday, D. (2006) Modeling submarine groundwater discharge at Elim Beach. In: Pacem in Maribus XXXI Conference Proceedings. pp. 385-398. From: Pacem in Maribus XXXI Conference: Building Bridges Towards Integrated Oceans Governance: Linking Ocean Science, Engineering, Technology and Policy, 31 October - 3 November 2005, Townsville, QLD, Australia.

Andutta, Fernando Pinheiro, dos Santos, Michael R.M., De Miranda, Luiz Bruner, Ancona, Cintia M., Saldanha-Corrêa, Flávia M.P., and Gianesella, Sônia M.F. (2006) Monthly variations of physical and chemical properties observed in Santos Bay and Santos Estuarine channel. In: Proceedings of the Environmental and Health World Congress. pp. 80-84. From: EHWC 2006: Environmental and Health World Congress, 16-19 July 2006, Santos, Brazil.

Preite, C.K., Pearson, R.G., Heimann, K., and Burrows, D.W. (2005) Algal dynamics in tropical riverine water holes. In: Phycologia (44) p. 83. From: Conference, 13-19 August 2005, Durban, South Africa.

Cable, Jaye, Martin, Jonathan, and Stieglitz, Thomas (2005) In situ evaluation of nearshore porewater exchange rates in Flamengo Bay, Brazil. In: Interactions of Groundwater and Surface Water at the Land-Sea Margin. 191-4. From: 2005 Salt Lake City Annual Meeting , 16-19 October 2005, Salt Lake City, USA.

Book

Hopley, David, Smithers, Scott G., and Parnell, Kevin E. (2007) The Geomorphology of the Great Barrier Reef: development, diversity and change. Cambridge University Press, Cambridge, United Kingdom.

Thesis

Davidson, Josh (2016) Energy harvesting for marine based sensors. PhD thesis, James Cook University.

Wilkinson, Adam David (2015) Development of a miniature seagrass bioassay for PSII herbicides and its application to mixtures and simultaneous stressors. Masters (Research) thesis, James Cook University.

Bainbridge, Zoe T. (2015) Tracing the sources, transport and dispersal of suspended sediment from the Burdekin River catchment into the Great Barrier Reef lagoon. PhD thesis, James Cook University.

Macdonald, Rachael K. (2015) Turbidity and light attenuation in coastal waters of the Great Barrier Reef. PhD thesis, James Cook University.

Templeman, Michelle Anne (2012) Investigating the potential of jellyfishes as marine biomonitors and bioindicators of metal pollution. PhD thesis, James Cook University.

Connor, Sarah (2012) Movement of nitrogen through a riparian forest in a tropical, agricultural landscape. PhD thesis, James Cook University.

Hoeke, Ron Karl (2010) An investigation of wave-dominated coral reef hydrodynamics. PhD thesis, James Cook University.

Magnusson, Marie (2009) Effects of priority herbicides and their breakdown products on tropical, estuarine microalgae of the Great Barrier Reef Lagoon. PhD thesis, James Cook University.

Mao, Yadan (2009) Unsteady natural convection in near-shore waters. PhD thesis, James Cook University.

Broughton, John D. (2008) Element behaviour in inundated actual acid sulfate soils, East Trinity, Cairns. PhD thesis, James Cook University.

Preite, Carrie (2008) Phytoplankton dynamics of riverine water holes in the dry tropics of North Queensland, Australia. PhD thesis, James Cook University.

Muirhead, Elisabeth Knowles (2008) Polybrominated diphenyl ethers: levels in Townsville sediments, depuration and (anti-)estrogenic effects in Barramundi (Lates calcarifer). Masters (Research) thesis, James Cook University.

Blanchette, Melanie Lise (2006) The use of esterase activity as a measure of copper toxicity in marine microalgae. Masters (Research) thesis, James Cook University.

Susilo, Adi (2004) Groundwater flow in arid tropical tidal wetlands and estuaries. PhD thesis, James Cook University.