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Number of items at this level: 169.

A

Andutta, Fernando P. , Ridd, Peter V., and Wolanski, E. (2013) The age and the flushing time of the Great Barrier Reef Waters. Continental Shelf Research, 53. pp. 11-19.

Andutta, Fernando P., Ridd, Peter V., and Wolanski, Eric (2011) Dynamics of hypersaline coastal waters in the Great Barrier Reef. Estuarine, Coastal and Shelf Science, 94 (4). pp. 299-305.

Andutta, Fernando Pinheiro, dos Santos, Michael R.M., De Miranda, Luiz Bruner, Ancona, Cintia M., Saldanha-Corrêa, Flávia M.P., and Gianesella, Sônia M.F. (2006) Monthly variations of physical and chemical properties observed in Santos Bay and Santos Estuarine channel. In: Proceedings of the Environmental and Health World Congress. pp. 80-84. From: EHWC 2006: Environmental and Health World Congress, 16-19 July 2006, Santos, Brazil.

Anthony, Kenneth R.N., Ridd, Peter V., Orpin, Alan R., Larcombe, Piers, and Lough, Janice (2004) Temporal variation of light availability in coastal benthic habitats : effects of clouds, turbidity, and tides. Limnology and Oceanography, 49 (6). pp. 2201-2211.

B

Bishop-Taylor, Robbi, Sagar, Stephen, Lymburner, Leo, and Beaman, Robin J. (2019) Between the tides: modelling the elevation of Australia’s exposed intertidal zone at continental scale. Estuarine, Coastal and Shelf Science, 223. pp. 115-128.

Bainbridge, Z., Lewis, S., Bartley, R., Fabricius, K., Collier, C., Waterhouse, J., Garzon-Garcia, A., Robson, B., Burton, J., Wenger, A., and Brodie, J. (2018) Fine sediment and particulate organic matter: a review and case study on ridge-to-reef transport, transformations, fates, and impacts on marine ecosystems. Marine Pollution Bulletin, 135. pp. 1205-1220.

Bejannin, Simon, van Beek, Pieter, Stieglitz, Thomas, Souhaut, Marc, and Tamborski, Joseph (2017) Combining airborne thermal infrared images and radium isotopes to study submarine groundwater discharge along the French Mediterranean coastline. Journal of Hydrology: Regional Studies, 13. pp. 72-90.

Bryant, Catherine, Davies, Jaclyn, and Rasheed, Michael (2016) Gladstone Western Basin BPAR Monitoring: November 2015 - February 2016. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Bartley, Rebecca, Croke, Jacky, Bainbridge, Zoe T., Austin, Jenet M., and Kuhnert, Petra M. (2015) Combining contemporary and long-term erosion rates to target erosion hot-spots in the Great Barrier Reef, Australia. Anthropocene, 10. pp. 1-12.

Bainbridge, Zoe T. (2015) Tracing the sources, transport and dispersal of suspended sediment from the Burdekin River catchment into the Great Barrier Reef lagoon. PhD thesis, James Cook University.

Bainbridge, Zöe T., Lewis, Stephen E., Smithers, Scott G., Kuhnert, Petra M., Henderson, Brent L., and Brodie, Jon E. (2014) Fine-suspended sediment and water budgets for a large, seasonally dry tropical catchment: Burdekin River catchment, Queensland, Australia. Water Resources Research, 50 (11). pp. 9067-9087.

Bryant, Catherine, and Reason, Carissa (2014) Gladstone Western Basin and Channel Dupliaction BPAR Monitoring May - July 2014. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Bryant, Catherine, and Tasker, Zoe (2014) Gladstone Western Basin Post Dredge BPAR Monitoring March - May 2014. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Bryant, C.V., and Tasker, Z. (2014) Gladstone Western Basin Post Dredge BPAR Monitoring December 2013 - February 2014. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Bass, A.M., O'Grady, D., Leblanc, M., Tweed, S., Nelson, P.N., and Bird, M.I. (2014) Carbon dioxide and methane emissions from a wet-dry tropical floodplain in Northern Australia. Wetlands , 34 (3). pp. 619-627.

Browne, Nicola K., Smithers, Scott G., Perry, Chris T., and Ridd, Peter V. (2012) A field-based technique for measuring sediment flux on coral reefs: application to turbid reefs on the Great Barrier Reef. Journal of Coastal Research, 28 (5). 5. pp. 1247-1262.

Bainbridge, Z.T., Brodie, J.E., Lewis, S.E., Waterhouse, J., and Wilkinson, S.N. (2009) Utilising catchment modelling as a tool for monitoring Reef Rescue outcomes in the Great Barrier Reef catchment area. In: Proceedings of 18th World IMACS Congress and MODSIM09 International Congress on Modelling and Simulation. pp. 3301-3307. From: 18th World IMACS Congress and MODSIM09 International Congress on Modelling and Simulation, 13–17 July 2009, Cairns, QLD, Australia.

Broughton, John D. (2008) Element behaviour in inundated actual acid sulfate soils, East Trinity, Cairns. PhD thesis, James Cook University.

Brodie, Jon, Bainbridge, Zoe, and Lewis, Stephen (2008) Tully Murray Water Quality Monitory Strategy. Report. Australian Centre for Tropical Freshwater Research, Townsville, QLD, Australia.

Berkeley, A., Perry, C.T., Smithers, S.G., Horton, B.P., and Taylor, K.G. (2007) A review of the ecological and taphonomic controls on foraminiferal assemblage development in intertidal environments. Earth-Science Reviews, 83 (3-4). pp. 205-230.

Burnett, W.C., Aggarwal, P.K, Aureli, A., Bokuniewicz, H., Cable, J.E., Charette, M.A., Kontar, E., Krupa, S., Kulkarni, K.M., Loveless, A., Moore, W.S., Oberdorfer, J.A., Oliveira, J., Ozyurt, N., Povinec, P., Privitera, A.M.G., Rajar, R., Ramessur, R.T., Stieglitz, T., Taniguchi, M., Turner, J.V., and Scholten, J. (2006) Quantifying submarine groundwater discharge in the coastal zone via multiple methods. Science of the Total Environment, 367 (2-3). pp. 498-543.

Blanchette, Melanie Lise (2006) The use of esterase activity as a measure of copper toxicity in marine microalgae. Masters (Research) thesis, James Cook University.

Bell, Alicia M., and Duke, Norman C. (2005) Effects of Photosystem II-inhibiting herbicides on mangroves: preliminary toxicology trials. Marine Pollution Bulletin, 51 (1-4). pp. 297-307.

Bryce, S., Larcombe, P., and Ridd, P.V. (2003) Hydrodynamic and geomorphological controls on suspended sediment transport in mangrove creek systems, a case study: Cocoa Creek, Townsville, Australia. Estuarine, Coastal and Shelf Science, 56 (3-4). pp. 415-431.

C

Cook, Peter G., Rodellas, Valentí, Adnrisoa, Aladin, and Stieglitz, Thomas C. (2018) Exchange across the sediment-water interface quantified from porewater radon profiles. Journal of Hydrology, 559. pp. 873-883.

Collier, Catherine J., Langlois, Lucas, Zemoi, Rahel, Martin, Katherine, and McKenzie, Len (2016) Developing and refining biological indicators for condition assessments in an integrated monitoring program. Report. James Cook University, Cairns, Australia.

Collier, Catherine J., Chartrand, Katie, Honchin, Carol, Fletcher, Adam, and Rasheed, Michael (2016) Light thresholds for seagrasses of the GBRWHA: a synthesis and guiding document. Report. James Cook University, Cairns, Australia.

Collier, Catherine J., Villacorta-Rath, Cecilia, van Dijk, Kor-jent, Takahashi, Miwa, and Waycott, Michelle (2014) Seagrass proliferation precedes mortality during hypo-salinity events: a stress-induced morphometric response. PLoS ONE, 9 (4). e94014. pp. 1-11.

Collier, Catherine J., Devlin, Michelle, Langlois, Lucas, McKenzie, Len J., Petus, Caroline, Da Silva, Eduardo Teixeira, McMahon, Kathryn, Adams, Matthew, O'Brien, Kate, Statton, John, and Waycott, Michelle (2014) Final report on thresholds and indicators of declining water quality as tools for tropical seagrass management. Report. James Cook University, Townsville, Australia.

Connor, Sarah (2012) Movement of nitrogen through a riparian forest in a tropical, agricultural landscape. PhD thesis, James Cook University.

Cappo, Mike, De'ath, Glenn, Boyle, Steve, Aumend, James, Olbrich, Roland, Hoedt, Frank, Perna, Colton, and Brunskill, Gregg (2005) Development of a robust classifier of freshwater residence in barramundi (Lates calcarifer) life histories using elemental ratios in scales and boosted regression trees. Marine and Freshwater Research, 56 (5). pp. 713-723.

Cable, Jaye, Martin, Jonathan, and Stieglitz, Thomas (2005) In situ evaluation of nearshore porewater exchange rates in Flamengo Bay, Brazil. In: Interactions of Groundwater and Surface Water at the Land-Sea Margin. 191-4. From: 2005 Salt Lake City Annual Meeting , 16-19 October 2005, Salt Lake City, USA.

D

David, Marine, Bailly-Comte, Vincent, Munaron, Dominique, Fiandrino, Annie, and Stieglitz, Thomas C. (2019) Groundwater discharge to coastal streams – a significant pathway for nitrogen inputs to a hypertrophic Mediterranean coastal lagoon. Science of the Total Environment, 677. pp. 142-155.

Davies, Jaclyn, Shepherd, Lloyd, Bryant, Catherine, and Rasheed, Michael (2016) Gladstone Western Basin BPAR Monitoring Update: February - May 2016. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Davies, Jaclyn, Bryant, Catherine, and Rasheed, Michael (2016) Gladstone Western Basin BPAR Monitoring: August - November 2015. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Davidson, Josh (2016) Energy harvesting for marine based sensors. PhD thesis, James Cook University.

Devlin, M.J., Massoud, M.S., Hamid, S.A., Al-Zaidan, A., Al-Sarawi, H., Al-Enezi, M., Al-Ghofran, L., Smith, A.J., Barry, J., Stentiford, G.D., Morris, S., da Silva, E.T., and Lyons, B.P. (2015) Changes in the water quality conditions of Kuwait's marine waters: long term impacts of nutrient enrichment. Marine Pollution Bulletin, 100 (2). pp. 607-620.

Davies, Jaclyn, Scott, Emma, Bryant, Catherine, and Rasheed, Michael (2015) Gladstone Western Basin and Channel Duplication BPAR Monitoring: May - August 2015. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Davies, Jaclyn, Taylor, Helen, Bryant, Catherine, and Rasheed, Michael (2015) Gladstone Western Basin and Channel Dupliaction BPAR Monitoring February/ March - May 2015. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Davies, Jaclyn, Scott, Emma, Bryant, Catherine, and Rasheed, Michael (2015) Gladstone Western Basin and Channel Duplication BPAR Monitoring: November 2014 - March 2015. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Devlin, Michelle, Fabricius, Katharina, Negri, Andrew, Brodie, Jon, Waterhouse, Jane, Uthicke, Sven, Collier, Catherine, Pressey, Bob, Augé, Amélie, Reid, Ben, Woodberry, Owen, Zhao, Jian-xin, Clarke, Tara, Pandolfi, John, and Bennett, John (2015) Water quality synthesis of NERP tropical ecosystems hub GBR water quality research outputs 2011-2014. Report. Reef and Rainforest Research Centre, Cairns, Australia.

Delandmeter, Philippe, Lewis, Stephen E., Lambrechts, Jonathan, Deleersnijder, Eric, Legat, Vincent, and Wolanski, Eric (2015) The transport and fate of riverine fine sediment exported to a semi-open system. Estuarine, Coastal and Shelf Science , 167 (Part B). pp. 336-346.

Davies, Jaclyn, Bryant, Catherine, and Rasheed, Michael (2014) Gladstone Western Basin and Channel Dupliaction BPAR Monitoring August - October 2014. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Devlin, Michelle J., da Silva, Eduardo Teixeira, Petus, Caroline, Wenger, Amelia, Zeh, Daniel, Tracey, Dieter, Álvarez-Romero, Jorge G., and Brodie, Jon (2013) Combining in-situ water quality and remotely sensed data across spatial and temporal scales to measure variability in wet season chlorophyll-a: Great Barrier Reef lagoon (Queensland, Australia). Ecological Processes, 2. 31. pp. 1-22.

de Miranda, Luiz Bruner, Olle, Eugenio Dalle, Bergamo, Alessandro Luvizon, dos Santos Silva, Lourval, and Pinheiro Andutta, Fernando (2012) Circulation and salt intrusion in the Piacaguera Channel, Santos (SP). Brazilian Journal of Oceanography, 60 (1). pp. 11-23.

Dao, Vinh, Dux, Peter, and Morris, Peter (2007) Effectiveness of permeability-reducing admixtures in marine concrete. In: Proceedings of Concrete under severe conditions - environment and loading CONSEC'07 (1) pp. 449-456. From: 5th International conference on concrete under severe conditions of environment and loading, 4-6 June 2007, Tours, France.

Da Silva, Eduardo Teixeira, Ridd, Michael, Klumpp, David, and Ridd, Peter (2004) Relative contribution of food and water to the Cd burden in Balanus amphitrite in an urban tidal creek discharging into the Great Barrier Reef lagoon. Estuarine, Coastal and Shelf Science , 60 (2). pp. 313-324.

Duke, Norman, and Watkinson, Andrew J. (2002) Chlorophyll-deficient propagules of Avicennia marina and apparent longer term deterioration of mangrove fitness in oil-polluted sediments. Marine Pollution Bulletin, 44 (11). pp. 1269-1276.

E

Epstein, Hannah E., Templeman, Michelle A., and Kingsford, Michael J. (2016) Fine-scale detection of pollutants by a benthic marine jellyfish. Marine Pollution Bulletin, 107 (1). pp. 340-346.

Eakin, C. Mark, Morgan, Jessica A., Heron, Scott F., Smith, Tyler B., Lui, Gang, Alvarez-Filip, Lorenzo, Baca, Bart, Bartels, Erich, Bastidas, Carolina, Bouchon, Claude, Brandt, Marilyn, Bruckner, Andrew W., Bunkley-Williams, Lucy, Cameron, Andrew, Causey, Billy D., Chiappone, Mark, Christensen, Tyler R.L., Crabbe, M. James C., Day, Owen, de la Guardia, Elena, Díaz-Pulido, Guillermo, DiResta, Daniel, Gil-Agudelo, Diego L., Gilliam, David S., Ginsburg, Robert N., Gore, Shannon, Guzmán, Héctor M., Hendee, James C., Hernández-Delgado, Edwin A., Husain, Ellen, Jeffrey, Christopher F.G., Jones, Ross J., Jordán-Dahlgren, Eric, Kaufman, Les S., Kline, David I., Kramer, Philip A., Lang, Judith C., Lirman, Diego, Mallela, Jennie, Manfrino, Carrie, Maréchal, Jean-Phillipe, Marks, Ken, Mihaly, Jennifer, Miller, W. Jeff, Mueller, Erich M., Muller, Erinn M., Toro, Carlos A. Orozco, Oxenford, Hazel A., Ponce-Taylor, Daniel, Quinn, Norman, Ritchie, Kim B., Rodríguez, Sebastián, Ramírez, Alberto Rodríguez, Romano, Sandra, Samhouri, Jameal F., Sánchez, Juan A., Schmahl, George P., Shank, Burton V., Skirving, William J., Steiner, Sascha C.C., Villamizar, Estrella, Walsh, Shiela M., Walter, Cory, Weil, Ernesto, Williams, Ernest H., Roberson, Kimberly Woody, and Yusuf, Yusri (2010) Caribbean corals in crisis: record thermal stress, bleaching, and mortality in 2005. PLoS ONE, 5 (11). e13969.

F

Furuichi, Takahisa, Olley, Jon, Wilkinson, Scott, Lewis, Stephen, Bainbridge, Zoe, and Burton, Joanne (2016) Paired geochemical tracing and load monitoring analysis for identifying sediment sources in a large catchment draining into the Great Barrier Reef Lagoon. Geomorphology, 266. pp. 41-52.

Flores, Florita, Collier, Catherine J., Mercurio, Philip, and Negri, Andrew P. (2013) Phytotoxicity of four photosystem II herbicides to tropical seagrasses. PLoS ONE, 8 (9). e75798. pp. 1-12.

Fujii, Satoshi, Heron, Malcolm L., Kim, Kuh, Lai, Jian-Wu, Lee, Sang-Ho, Wu, Xiangbai, Wu, Xiongbin, Wyatt, Lucy R., and Yang, Wen-Chang (2013) An overview of developments and applications of oceanographic radar networks in Asia and Oceania countries. Ocean Science Journal, 48 (1). pp. 69-97.

Fulton, Christopher J., and Bellwood, David R. (2005) Wave-induced water motion and the functional implications for coral reef fish assemblages. Limnology and Oceanography, 50 (1). pp. 255-264.

Faithful, John W., and Griffiths, Dilwyn J. (2000) Turbid flow through a tropical reservoir (Lake Dalrymple, Queensland, Australia): responses to a summer storm event. Lakes and Reservoirs: research and management, 5 (4). pp. 231-247.

G

Gharahjeh, Siamak, Situ, Rong, He, Yinghe, Lin, Wenxian, and Brown, Richard (2017) A review on ocean acidification as a result of shipping emissions in harbors. In: Proceedings of the Australasian Coasts & Ports 2017 Conference. pp. 483-486. From: Australasian Coasts & Ports 2017 Conference: working with nature, 21-23 June 2017, Cairns, QLD, Australia.

Gladish, Daniel W., Kuhnert, Petra M., Pagendam, Daniel E., Wikle, Christopher K., Bartley, Rebecca, Searle, Ross D., Ellis, Robin J., Dougall, Cameron, Turner, Ryan D.R., Lewis, Stephen E., Bainbridge, Zoe T., and Brodie, Jon E. (2016) Spatio-temporal assimilation of modelled catchment loads with monitoring data in the Great Barrier Reef. Annals of Applied Statistics, 10 (3). pp. 1590-1618.

H

Hoeke, Ron K., Storlazzi, Curt D., and Ridd, Peter V. (2013) Drivers of circulation in a fringing coral reef embayment: a wave-flow coupled numerical modeling study of Hanalei Bay, Hawaii. Continental Shelf Research, 58. pp. 79-95.

Heron, Malcom L., and Atwater, Daniel P. (2013) Temporal and spatial resolution of HF ocean radars. Ocean Science Journal, 48 (1). pp. 99-103.

Heron, M.L., O'Shea, M., Murphy, J., Petersen, L., Mollaghan, D., and Prytz, A. (2013) Interpretation of VHF radar echoes from a complex flow field. In: Proceedings of Oceans 2013 MTS/IEEE San Diego. 6741266. pp. 1-4. From: Oceans 2013 MTS/IEEE San Diego, 23-27 September 2013, San Diego, CA, USA.

Heron, Malcolm L. (2013) Mapping currents at tidal turbine sites using VHF high resolution ocean radar. In: Proceedings of Oceans 2013 MTS/IEEE Bergen. From: Oceans 2013 MTS/IEEE Bergen, 10-13 June 2013, Bergen, Norway.

Heron, Mal, Wyatt, Lucy, Atwater, Daniel, and Prytz, Arnstein (2012) The Australian coastal ocean radar network: lessons learned in the establishment phase. In: OCEANS, 2012 - YEOSU. pp. 1-5. From: OCEANS, 2012 - YEOSU, 21-24 May 2012, Yeosu, Korea (South).

Heron, M.L., Savidge, Dana, and Blanton, Jack (2012) VHF radar measurements of flow in a salt marsh creek. In: Oceans. pp. 1-5. From: Oceans 2012, 14-19 October 2012, Hampton Road, VA, USA.

Hoeke, Ron, Storlazzi, Curt, and Ridd, Peter (2011) Hydrodynamics of a bathymetrically complex fringing coral reef embayment: wave climate, in situ observations, and wave prediction. Journal of Geophysical Research: Oceans, 116. C04018. pp. 1-19.

Heron, Mal, Prytz, Arnstein, and Steinberg, Craig (2011) Application of VHF high resolution radar to evaluating circulation around a seawater intake facility. In: Proccedings of OCEANS 2011. pp. 1-5. From: OCEANS 2011 MTS/IEEE Kona, 19-22 September 2011, Waikoloa, HI, USA.

Heron, S.F., Steinberg, C.R., Heron, M.L., Mantovanelli, A., Jaffrés, Jasmine, Skirving, W.J., McAllister, F., Rigby, P., Wisdom, D., and Bainbridge, S. (2010) Advancing ocean monitoring near coral reefs. EOS, 91 (41). pp. 369-380.

Heron, Scott F., Willis, Bette L., Skirving, William J., Eakin, C. Mark, Page, Cathie A., and Miller, Ian R. (2010) Summer hot snaps and winter conditions: modelling white syndrome outbreaks on Great Barrier Reef corals. PLoS ONE, 5 (8). e12210. pp. 1-11.

Hoeke, Ron Karl (2010) An investigation of wave-dominated coral reef hydrodynamics. PhD thesis, James Cook University.

Hollins, Suzanne E., Heron, Scott F., and Ridd, Peter V. (2009) Methods for monitoring tidal flushing in large animal burrows in tropical mangrove swamps. Estuarine, Coastal and Shelf Science, 82 (4). pp. 615-620.

Hopley, David, Smithers, Scott G., and Parnell, Kevin E. (2007) The Geomorphology of the Great Barrier Reef: development, diversity and change. Cambridge University Press, Cambridge, United Kingdom.

Hopley, David (2006) Coral reef growth on the shelf margin of the Great Barrier Reef with special reference to the Pompey Complex. Journal of Coastal Research, 22 (1). pp. 150-158.

Hancock, Gary J., Webster, Ian T., and Stieglitz, Thomas C. (2006) Horizontal mixing of Great Barrier Reef waters: offshore diffusivity determined from radium isotope distribution. Journal of Geophysical Research: oceans, 111. C12019. - .

Halide, Halmar, Brinkman, Richard, and Ridd, Peter (2004) Designing bamboo wave attenuators for mangrove plantations. Indian Journal of Marine Sciences, 33 (3). pp. 220-225.

Heron, S.F., and Ridd, P.V. (2003) The effect of water density variations on the tidal flushing of animal burrows. Estuarine, Coastal and Shelf Science , 58 (1). pp. 137-145.

Halide, Halmar, Ridd, Peter V., Peterson, Eric L., and Foster, David (2003) Assessing sediment removal capacity of vegetated and non-vegetated settling ponds in prawn farms. Aquacultural Engineering, 27 (4). pp. 295-314.

Heap, A.D., Dickens, G.R., and Stewart, L.K. (2001) Late Holocene sediment in Nara Inlet, central Great Barrier Reef platform, Australia: sediment accumulation on the middle shelf of a tropical mixed clastic/carbonate system. Marine Geology, 176 (1-4). pp. 39-54.

J

Jamal Khan, S., Visvanathan, C., Jegatheesan, V., and BenAim, R. (2008) Influence of mechanical mixing rates on sludge characteristics and membrane fouling in MBRs. Separation Science and Technology, 43 (7). pp. 1826-1838.

K

Kennedy, Karen, Devlin, Michelle, Bentley, Christie, Lee-Chue, Kristie, Paxman, Chris, Carter, Steve, Lewis, Stephen, Brodie, Jon, Guy, Ellia, Vardy, Suzanne, Martin, Katherine C., Jones, Alison, Packett, Robert, and Mueller, Jochen F. (2012) The influence of a season of extreme wet weather events on exposure of the World Heritage Area Great Barrier Reef to pesticides. Marine Pollution Bulletin, 64 (7). pp. 1495-1507.

Kelpsaite, L., Parnell, K.E., and Soomere, T. (2009) Energy pollution: the relative influence of wind-wave and vessel-wake energy in Tallinn Bay, the Baltic Sea. Journal of Coastal Research, 56 (1). pp. 812-816.

Kurennoy, D., Soomere, T., and Parnell, K.E. (2009) Variability in the properties of wakes generated by high-speed ferries. Journal of Coastal Research, 56 (1). pp. 519-523.

Kench, P.S., Nichol, S.L., Smithers, S.G., Mclean, R.F., and Brander, R.W. (2008) Tsunami as agents of geomorphic change in mid-ocean reef islands. Geomorphology, 95 (3-4). pp. 361-383.

Kench, Paul S., McLean, Roger F., Brander, Robert W., Nichol, Scott L., Smithers, Scott G., Ford, Murray R., Parnell, Kevin E., and Aslam, Mohamed (2006) Geological effects of tsunami on mid-ocean atoll islands: the Maldives before and after the Sumatran tsunami. Geology, 34 (3). pp. 177-180.

L

Larcombe, P., Costen, A.R., and Woolfe, K.J. (2001) The hydrodynamic and sedimentary setting of nearshore coral reefs, central Great Barrier Reef shelf, Australia: Paluma Shoals, a case study. Sedimentology Online, 48 (4). pp. 811-835.

M

MacNeil, M. Aaron, Mellin, Camille, Matthews, Sam, Wolff, Nicholas H., McClanahan, Timothy R., Devlin, Michelle, Drovandi, Christopher, Mengersen, Kerrie, and Graham, Nicholas A.J. (2019) Water quality mediates resilience on the Great Barrier Reef. Nature Ecology & Evolution, 3 (4). pp. 620-627.

Mergvelashvili, N., Andrewartha, J., Baird, M., Herzfeld, M., Jones, E., Mongin, M., Rizwi, F., Robson, B.J., Skerratt, J., Wild-Allen, K., and Steven, Andrew (2018) Simulated fate of catchment-derived sediment on the Great Barrier Reef shelf. Marine Pollution Bulletin, 135. pp. 954-962.

Moosdorf, Nils, Stieglitz, Thomas, Waska, Hannelore, Dürr, Hans H., and Hartmann, Jens (2015) Submarine groundwater discharge from tropical islands: a review. Grundwasser, 20 (1). pp. 53-67.

Macdonald, Rachael K. (2015) Turbidity and light attenuation in coastal waters of the Great Barrier Reef. PhD thesis, James Cook University.

Marchant, Ross, Stevens, Thomas, Choukroun, Severine, Combes, Gavin, Santarossa, Michael, Whinney, James, and Ridd, Peter (2014) A buoyant tethered sphere for marine current estimation. IEEE Journal of Oceanic Engineering, 39 (1). pp. 2-9.

Magnusson, Marie, Heimann, Kirsten, Ridd, Michael, and Negri, Andrew P. (2013) Pesticide contamination and phytotoxicity of sediment interstitial water to tropical benthic microalgae. Water Research, 47 (14). pp. 5211-5221.

Macdonald, Rachael K., Ridd, Peter V., Whinney, James C., Larcombe, Piers, and Neil, David T. (2013) Towards environmental management of water turbidity within open coastal waters of the Great Barrier Reef. Marine Pollution Bulletin, 74 (1). pp. 82-94.

McClanahan, Tim R., Donner, Simon D., Maynard, Jeffrey A., MacNeil, M. Aaron, Graham, Nicholas A.J., Maina, Joseph, Baker, Andrew C., Alemu, Jahson B., Beger, Maria, Campbell, Stuart J., Darling, Emily S., Eakin, C. Mark, Heron, Scott F., Jupiter, Stacy D., Lundquist, Carolyn J., McLeod, Elizabeth, Mumby, Peter J., Paddack, Michelle J., Selig, Elizabeth R., and van Woesik, Robert (2012) Prioritizing key resilience indicators to support coral reef management in a changing climate. PLoS ONE, 7 (8). e42884. pp. 1-7.

Magnusson, Marie, Heimann, Kirsten, Ridd, Michael, and Negri, Andrew P. (2012) Chronic herbicide exposures affect the sensitivity and community structure of tropical benthic microalgae. Marine Pollution Bulletin, 65 (4-9). pp. 363-372.

McCormack, C.V., Rasheed, M.A., and Carter, A.B. (2012) Effects of Shading on Zostera capricorni in the Gladstone Western Basin During the Senescent Season: April - July 2012. Report. Department of Agriculture, Fisheries and Forestry, Cairns, QLD, Australia.

McKinna, Lachlan I.W., Furnas, Miles J., and Ridd, Peter V. (2011) A simple, binary classification algorithm for the detection of Trichodesmium spp. within the Great Barrier Reef using MODIS imagery. Limnology and Oceanography: Methods, 9. pp. 50-66.

Magnusson, Marie (2009) Effects of priority herbicides and their breakdown products on tropical, estuarine microalgae of the Great Barrier Reef Lagoon. PhD thesis, James Cook University.

Mao, Yadan (2009) Unsteady natural convection in near-shore waters. PhD thesis, James Cook University.

Muirhead, Elisabeth Knowles (2008) Polybrominated diphenyl ethers: levels in Townsville sediments, depuration and (anti-)estrogenic effects in Barramundi (Lates calcarifer). Masters (Research) thesis, James Cook University.

N

Novoa, Stefani, Chust, Guillem, Froidefond, Jean M., Petus, Caroline, Franco, Javier, Orive, Emma, Seoane, Sergio, and Borja, Angel (2012) Water quality monitoring in Basque coastal areas using local chlorophyll-a algorithm and MERIS images. Journal of Applied Remote Sensing, 6 (1). 063519. pp. 1-27.

Nott, Jonathan (2004) The tsunami hypothesis—comparisons of the field evidence against the effects, on the Western Australian coast, of some of the most powerful storms on Earth. Marine Geology, 208 (1). pp. 1-12.

O

Orpin, Alan R., and Ridd, Peter V. (2012) Exposure of inshore corals to suspended sediments due to wave-resuspension and river plumes in the central Great Barrier Reef: a reappraisal. Continental Shelf Research, 47. . pp. 55-67.

Orpin, Alan R., Ridd, Peter V., Thomas, Séverine, Anthony, Kenneth R.N., Marshall, Paul, and Oliver, Jamie (2004) Natural turbidity variability and weather forecasts in risk management of anthropogenic sediment discharge near sensitive environments. Marine Pollution Bulletin, 49 (7). pp. 602-612.

P

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Read, W.W., Stieglitz, T., and Holliday, D. (2006) Modeling submarine groundwater discharge at Elim Beach. In: Pacem in Maribus XXXI Conference Proceedings. pp. 385-398. From: Pacem in Maribus XXXI Conference: Building Bridges Towards Integrated Oceans Governance: Linking Ocean Science, Engineering, Technology and Policy, 31 October - 3 November 2005, Townsville, QLD, Australia.

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Stieglitz, Thomas C., van Beek, Pieter, Souhaut, Marc, and Cook, Peter G. (2013) Karstic groundwater discharge and seawater recirculation through sediments in shallow coastal Mediterranean lagoons, determined from water, salt and radon budgets. Marine Chemistry, 156. pp. 73-84.

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