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Brunner, Ramona (2023) Investigating receptors and signalling pathways of coral settlement and metamorphosis using proteomics, transcriptomics and phylogenetics. PhD thesis, James Cook University.

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Bartelet, Henry (2021) 珊瑚礁系统动力学 / Coral Reef System Dynamics. China Ocean Press, Beijing, China.

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Claassens, L., de Villiers, N.M., and Waltham, N.J. (2022) How developed is the South African coast? Baseline extent of South Africa’s coastal and estuarine infrastructure. Ocean and Coastal Management, 222. 106112.

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Cramp, Jessica E. (2021) Evaluating the effectiveness of large-scale marine reserves on wide-ranging sharks: a case study of the Cook Islands Shark Sanctuary. PhD thesis, James Cook University.

Chuah, T.S., Loh, J.Y., and Hii, Y.S. (2007) Acute and Chronic Effects of the Insecticide-Endosulfan on Freshwater Cladoceran, Moina macrocopa Straus. Bulletin of Environmental Contamination and Toxicology, 79. pp. 557-561.

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Datta, Amber Waialea (2023) Navigating extreme climate events: uncovering the challenges of social-ecological system governance in the Anthropocene. PhD thesis, James Cook University.

Datta, Amber, Barnes, Michele L., Chaffin, Brian, Floyd, Theresa, Morrison, Tiffany, and Sutcliffe, Sarah (2022) Big events, little change: Extreme climatic events have no region-wide effect on Great Barrier Reef governance. Journal of Environmental Management, 320. 115809.

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Exeter, Owen M., Htut, Thaung, Kerry, Christopher R., Kyi, Maung Maung, Mizrahi, Me'ira, Turner, Rachel A., Witt, Matthew J., and Bicknell, Anthony W.J. (2021) Shining light on data-poor coastal fisheries. Frontiers in Marine Science, 7. 625766.

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Gabela-Flores, María Virginia, and Diedrich, Amy (2021) Exploring leadership dynamics in community-based marine protected areas. Marine Policy, 129. 104569.

Goetze, Jordan, Wilson, Shaun, Radford, Ben, Fisher, Rebecca, Langlois, Tim J., Monk, Jacquomo, Knott, Nathan A., Malcolm, Hamish, Currey-Randall, Leanne M., Ierodiaconou, Daniel, Harasti, David, Barrett, Neville, Babcock, Russell, Bosch, Nestor E., Brock, Danny, Claudet, Joachim, Clough, Jock, Fairclough, David, Heupel, Michelle R., Holmes, Thomas H., Huveneers, Charlie, Jordan, Alan R., McLean, Dianne, Meekan, Mark, Miller, David, Newman, Stephen J., Rees, Matthew J., Roberts, Kelsey E., Saunders, Benjamin J., Speed, Conrad W., Travers, Michael J., Treml, Eric, Whitmarsh, Sasha K., Wakefield, Corey B., and Harvey, Euan S. (2021) Increased connectivity and depth improve the effectiveness of marine reserves. Global Change Biology, 27 (15). pp. 3432-3447.

Grant, Michael I., White, William T., Amepou, Yolarnie, Baje, Leontine, Diedrich, Amy, Ibana, Dotty, Jogo, Dick J., Jogo, Stanley, Kyne, Peter M., Li, Owen, Mana, Ralph, Mapmani, Nigel, Nagul, Anthony, Roeger, Darcy, Simpfendorfer, Colin A., and Chin, Andrew (2021) Local knowledge surveys with small-scale fishers indicate challenges to sawfish conservation in southern Papua New Guinea. Aquatic Conservation: marine and freshwater ecosystems, 31 (10). pp. 2883-2900.

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Hook, Sharon E., Smith, Rachael A., Waltham, Nathan, and Warne, Michael St.J. (2024) Pesticides in the Great Barrier Reef catchment area: Plausible risks to fish populations. Integrated Environmental Assessment and Management. (In Press)

Hagger, Valerie, Waltham, Nathan J., and Lovelock, Catherine E. (2022) Opportunities for coastal wetland restoration for blue carbon with co-benefits for biodiversity, coastal fisheries, and water quality. Ecosystem Services, 55. 101423.

Hardesty, Britta Denise, Roman, Lauren, Duke, Norman C., Mackenzie, Jock R., and Wilcox, Chris (2021) Abandoned, lost and discarded fishing gear ‘ghost nets’ are increasing through time in Northern Australia. Marine Pollution Bulletin, 173. 112959.

Hein, Margaux Y., Beeden, Roger, Birtles, Alastair, Gardiner, Naomi M., Le Berre, Thomas, Levy, Jessica, Marshall, Nadine, Scott, Chad M., Terry, Lisa, and Willis, Bette L. (2020) Coral restoration effectiveness: multiregional snapshots of the long-term responses of coral assemblages to restoration. Diversity, 12 (4). 153.

Hein, Margaux Y., Beeden, Roger, Birtles, R. Alastair, Chase, Tory J., Couture, Fanny, Haskin, Elouise, Marshall, Nadine, Ripple, Kayla, Terry, Lisa, Willis, Bette L., Willis, Reanna, Gardiner, Naomi M., and UNSPECIFIED (2020) Effects of coral restoration on fish communities: snapshots of long-term, multiregional responses and implications for practice. Restoration Ecology, 28 (5). pp. 1158-1171.

Harrison, Peter, Chartrand, Katie, and Suggett, David (2020) Scaling up coral restoration using innovative Symbiodinium co‐culture and mass larval supply on reefs. Report. James Cook University, Cairns, QLD, Australia.

Huertas Martin, Victor, and Byrne, Maria (2019) Observation of mass spawning of the sea cucumber Holothuria coluber at Lizard Island, Great Barrier Reef, Australia. SPC Beche-de-mer Information Bulletin, 39. pp. 79-80.

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Jahanbakht, Mohammad, Xiang, Wei, Waltham, Nathan J., and Rahimiazghadi, Mostafa (2022) Distributed Deep Learning in the Cloud and Energy-efficient Real-time Image Processing at the Edge for Fish Segmentation in Underwater Videos Segmentation in Underwater Videos. IEEE Access, 10. pp. 117796-117807.

Jorgensen, Salvador J., Micheli, Fiorenza, White, Timothy D., Van Houtan, Kyle S., Alfaro-Shigueto, Joanna, Andrzejaczek, Samantha, Arnoldi, Natalie S., Baum, Julia K., Block, Barbara, Britten, Gregory L., Butner, Cheryl, Caballero, Susana, Cardenosa, Diego, Chapple, Taylor K., Clarke, Shelley, Cortés, Enric, Dulvy, Nicholas K., Fowler, Sarah, Gallagher, Austin J., Gilman, Eric, Godley, Brendan J., Graham, Rachel T., Hammerschlag, Neil, Harry, Alastair, Heithaus, Michael R., Hutchinson, Melanie, Huveneers, Charlie, Lowe, Chris G., Lucifora, Luis O., MacKeracher, Tracy, Mangel, Jeffrey C., Barbosa Martins, Ana Paula, McCauley, Douglas J., McClenachan, Loren, Mull, Christopher, Natanson, Lisa J., Pauly, Daniel, Pazmiño, Diana A., Pistevos, Jennifer C.A., Queiroz, Nuno, Roff, George, Shea, Brendan D., Simpfendorfer, Colin A., Sims, David W., Ward-Paige, Christine, Worm, Boris, and Ferretti, Francesco (2022) Emergent research and priorities for shark and ray conservation. Endangered Species Research, 47. pp. 171-203.

Jones, Geoffrey P., Srinivasan, Maya, Galbraith, Gemma F., Berumen, Michael L., and Planes, Serge (2022) Saving Nemo: Extinction Risk, Conservation Status, and Effective Management Strategies for Anemonefishes. In: Laudet, Vincent, and Ravasi, Timothy, (eds.) Evolution, Development and Ecology of Anemonefishes. CRC Press, Boca Raton, FL, USA, pp. 285-298.

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Kanno, Shiori (2023) Life history and spatial ecology of sharks and rays in mangrove habitats. PhD thesis, James Cook University.

Kanno, Shiori, Heupel, Michelle R., Sheaves, Marcus J., and Simpfendorfer, Colin A. (2023) Mangrove use by sharks and rays: A review. Marine Ecology Progress Series, 724. pp. 167-183.

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Losciale, Riccardo, Day, Jon, and Heron, Scott (2022) Conservation status, research, and knowledge of seagrass habitats in World Heritage properties. Conservation Science and Practice, 4 (12). e12830.

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McKenna, S.A., Concannon, T.G., Van de Wetering, C., and Rasheed, M.A. (2024) Bowen - McCanes Bay / Port Dennison Seagrass Assessments June 2024. Report. TropWATER, James Cook University, Cairns, QLD, Australia. (Unpublished)

Morris, Rebecca L., Campbell-Hooper, Erin, Waters, Elissa, Bishop, Melanie J., Lovelock, Catherine E., Lowe, Ryan J., Strain, Elizabeth M.A., Boon, Paul, Boxshall, Anthony, Browne, Nicola K., Carley, James T., Fest, Benedikt J., Fraser, Matthew W., Ghisalberti, Marco, Gillanders, Bronwyn M., Kendrick, Gary A., Konlechner, Teresa M., Mayer-Pinto, Mariana, Pomeroy, Andrew W.M., Rogers, Abbie A., Simpson, Viveka, Van Rooijen, Arnold A., Waltham, Nathan J., and Swearer, Stephen E. (2024) Current extent and future opportunities for living shorelines in Australia. Science of the Total Environment, 917. 17063.

McKenna, S., and Van de Wetering, C. (2024) Marine Benthic Habitat Assessment – Half Tide Tug Harbour, December 2023. Report. TropWATER, James Cook University, Cairns, QLD, Australia. (Unpublished)

McKenna, S.A., Concannon, T., Reason, C.L., and Rasheed, M.A. (2024) Port of Abbot Point Long-Term Seagrass Monitoring Program 2023. Report. TropWATER, James Cook University, Cairns, QLD, Australia. (Unpublished)

McKenna, S.A., Concannon, T.G., and Hoffmann, L. (2024) Port of Townsville Seagrass Monitoring Program: Brief Report May 2024. Report. TropWATER, James Cook University, Cairns, QLD, Australia. (Unpublished)

McKenna, S., and Firby, L. (2023) Marine Benthic Habitat Assessment – Hay Point Coal Terminal Berth 1 Extension, January 2023. Report. TropWATER, James Cook University, Cairns, QLD, Australia. (Unpublished)

McKenna, S., and Firby, L. (2023) Marine Plant Survey – Northern Breakwater Rehabilitation Project – Port of Mackay, January 2023. Report. TropWATER, James Cook University, Cairns, QLD, Australia. (Unpublished)

McKenna, S.A. (2023) Port of Townsville Channel Upgrade Project: Capital Dredge Footprint Seagrass Survey – Updated August 2023. Report. TropWATER, James Cook University, Cairns, QLD, Australia. (Unpublished)

McKenna, S. (2023) Port of Townsville Eastern Breakwater Marine Plant Assessment. Report. TropWATER, James Cook University, Cairns, QLD, Australia. (Unpublished)

Mahony, Tracey, Adams, Vanessa, Navarro, Matt, Jarvis, Diane, Stoeckl, Natalie, Chuah, Swee-Hoon, and Gelves, Francisco (2023) We like to fish:characterising the recreational fishing population and designing messages to improve compliance. External Commissioned Report. Univeristy of Tasmania, Hobart, TAS, Australia.

McKenna, S., Carter, A., Smit, N., McMahon, K., and Coles, R. (2023) An inventory of northern Australia’s seagrass data: research report Project 1.32a. Report. TropWATER, James Cook University, Townsville, QLD, Australia.

Murray, Nicholas J., Worthington, Thomas A., Bunting, Pete, Duce, Stephanie, Hagger, Valerie, Lovelock, Catherine E., Lucas, Richard, Saunders, Megan I., Sheaves, Marcus, Spalding, Mark, Waltham, Nathan J., and Lyons, Mitchell B. (2022) High-resolution mapping of losses and gains of Earth's tidal wetlands. Science, 376. pp. 744-749.

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Mizrahi, Meira (2021) Maximising potential impact of Marine Protected Area placement: an integrated socioeconomic perspective. PhD thesis, James Cook University.

Madliger, Christine L., Franklin, Craig E., Chown, Steven L., Fuller, Andrea, Hultine, Kevin R., Costantini, David, Hopkins, William A., Peck, Myron A., Rummer, Jodie L., Sack, Lawren, Willis, Craig K.R., and Cooke, Steven J. (2021) The second warning to humanity: contributions and solutions from conservation physiology. Conservation Physiology, 9 (1). coab038.

McLeod, Ian M., Bourne, David, Ceccarelli, Daniela M., Boström-Einarsson, Lisa, Cook, Nathan, Fulton, Stella E., Hancock, Boze, Harrison, Peter, Hein, Margaux, Le Port, Agnès, Paewai-Higgins, Roma, Smith, Hillary A., and Smith, Adam (2020) Best practice coral restoration for the Great Barrier Reef. Report. Reef and Rainforest Research Centre Limited (RRRC), Cairns, QLD, Australia.

McCook, Laurence, Lian, Jiansheng, Lei, Xinming, Chen, Zhu, Xue, Guifang (Julia), Cao, Ling, Chen, Shang, Ang, Put, and Huang, Hui (2017) Towards Best Practice Management of Coral Reefs and Marine Protected Areas in the South China Sea: Challenges and Opportunities. In: Xue, Guifang (Julia), and Zheng, Jie, (eds.) The Law of the Sea and Emerging Issues / 海洋法前沿-新议题与新挑战-英文. China Democracy and Legal System Publishing House, Beijing, China, pp. 83-110.

N

Nielsen, Josephine Jacoba Valentin (2023) Natural variation in heat tolerance of corals on the Great Barrier Reef. PhD thesis, James Cook University.

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Phong, Nguyen Tan, and Luom, Thai Thanh (2021) Configuration of Allocated Mangrove Areas and Protection of Mangrove-Dominated Muddy Coasts: Knowledge Gaps and Recommendations. Sustainability, 13 (11). 6258.

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Quigley, Kate M., Hein, Margaux, and Suggett, David J. (2022) Translating the 10 golden rules of reforestation for coral reef restoration. Conservation Biology, 36 (4). e13890.

Quigley, Kate, Bay, Line K., and van Oppen, Madeleine J. H. (2020) Genome-wide SNP analysis reveals an increase in adaptive genetic variation through selective breeding of coral. Molecular Ecology, 29 (12). pp. 2176-2188.

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Rosenberg, Yaeli, Simon-Blecher, Noa, Lalzar, Maya, Yam, Ruth, Shemesh, Aldo, Alon, Shahar, Perna, Gabriela, Cardenas, Anny, Voolstra, Christian R., Miller, David J., and Levy, Oren (2022) Urbanization comprehensively impairs biological rhythms in coral holobionts. Global Change Biology, 28 (10). pp. 3349-3364.

Raynal, J.M., Weeks, R., Pressey, R.L., Adams, A.J., Barnett, A., Cooke, S.J., and Sheaves, M. (2020) Habitat-dependent outdoor recreation and conservation organizations can enable recreational fishers to contribute to conservation of coastal marine ecosystems. Global Ecology and Conservation, 24. e01342.

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Sheaves, M., Mattone, C., Barnett, A., Abrantes, K., Bradley, M., Sheaves, A., Sheaves, J., and Waltham, N.J. (2024) Whale sharks as oceanic nurseries for Golden Trevally. Pacific Conservation Biology, 30 (1). PC23004.

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Smith, Hillary A., Fulton, Stella E., McLeod, Ian M., Page, Cathie A., and Bourne, David G. (2023) Sea-weeding: Manual removal of macroalgae facilitates rapid coral recovery. Journal of Applied Ecology, 60 (11). pp. 2459-2471.

Shum, Edith, Benham, Claudia, Jones, Karina, and Ariel, Ellen (2023) Understanding people who volunteer with marine turtles: motives and values for engagement in conservation. Human Dimensions of Wildlife, 28 (3). pp. 199-217.

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Smallhorn-West, Patrick F., Cohen, Philippa J., Morais, Renato A., Januchowski-Hartley, Fraser A., Ceccarelli, Daniela, Malimali, Siola'a, Stone, Karen, Warren, Regon, and Cinner, Joshua E. (2022) Hidden benefits and risks of partial protection for coral reef fisheries. Ecology and Society, 27 (1). 26.

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