Publications by: Sylvain Foret

Also publishes as (S. Fêret, S. Forêt, Sylvain Fôret, Sylvain Forȇt, Sylvain Forêt, S. Fôret)

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Number of items: 37.

Gierz, Sarah, Forêt, Sylvain, and Leggat, William (2017) Transcriptomic analysis of thermally stressed Symbiodinium reveals differential expression of stress and metabolism genes. Frontiers in Plant Science, 8. pp. 1-20.

Jones, D.B., Zenger, K.R., Khatkar, M.S., Raadsma, H.W., van der Steen, H.A.M., Prochaska, J., Fôret, S., and Jerry, D.R. (2017) Development of a low density commercial genotyping array for the white legged shrimp, Litopenaeus vannamei. In: Proceedings of the Conference of the Association for the Advancement of Animal Breeding and Genetics. From: 22nd AAABG Conference 2017, 2-5 July 2017, Townsville, QLD, Australia. (In Press)

Jones, David B., Jerry, Dean R., Khatkar, Mehar S., Raadsma, Herman W., van der Steen, Hein, Prochaska, Jeffrey, Fôret, Sylvain, and Zenger, Kyall R. (2017) A comparative integrated gene-based linkage and locus ordering by linkage disequilibrium map for the Pacific white shrimp, Litopenaeus vannamei. Scientific Reports. (In Press)

Lin, Mei-Fang, Moya, Aurelie, Ying, Hua, Chen, Chaolun Allen, Cooke, Ira, Ball, Eldon E., Forȇt, Sylvain, and Miller, David J. (2017) Analyses of corallimorpharian transcriptomes provide new perspectives on the evolution of calcification in the Scleractinia (corals). Genome Biology and Evolution, 9 (1). pp. 150-160.

Torda, Gergely, Donelson, Jennifer M., Aranda, Manuel, Barshis, Daniel J., Bay, Line, Berumen, Michael L., Bourne, David G., Cantin, Neal, Foret, Sylvain, Matz, Mikhail, Miller, David J., Moya, Aurelie, Putnam, Hollie M., Ravasi, Timothy, van Oppen, Madeleine J.H., Vega Thurber, Rebecca, Vidal-Dupiol, Jeremie, Voolstra, Christian R., Watson, Sue-Ann, Whitelaw, Emma, Willis, Bette L., and Munday, Philip L. (2017) Rapid adaptive responses to climate change in corals. Nature Climate Change, 7. pp. 627-636.

Aguilar, Catalina, Raina, Jean-Baptiste, Motti, Cherie A., Foret, Sylvain, Hayward, David C., Lapeyre, Bruno, Bourne, David G., and Miller, David J. (2017) Transcriptomic analysis of the response of Acropora millepora to hypo-osmotic stress provides insights into DMSP biosynthesis by corals. BMC Genomics, 18.

Moya, Aurelie, Sakamaki, Kazuhiro, Mason, Benjamin M., Huisman, Lotte, Forêt, Sylvain, Weiss, Yvonne, Bull, Tara, Tomii, Kentaro, Imai, Kenichiro, Hayward, David C., Ball, Eldon E., and Miller, David J. (2016) Functional conservation of the apoptotic machinery from coral to man: the diverse and complex Bcl-2 and caspase repertoires of Acropora millepora. BMC Genomics, 17. pp. 1-20.

Bhattacharya, Debashish, Agrawal, Shobhit, Aranda, Manuel, Baumgarten, Sebastian, Belcaid, Mahdi, Drake, Jeana L., Erwin, Douglas, Foret, Sylvain, Gates, Ruth D., Gruber, David F., Kamel, Bishoy, Lesser, Michael P., Levy, Oren, Liew, Yi Jin, MacManes, Matthew, Mass, Tali, Medina, Monica, Mehr, Shaadi, Meyer, Eli, Price, Dana C., Putnam, Hollie M., Qiu, Huan, Shinzato, Chuya, Shoguchi, Eiichi, Stokes, Alexander J., Tambutté, Sylvie, Tchernov, Dan, Voolstra, Christian R., Wagner, Nicole, Walker, Charles W., Weber, Andreas P.M., Weis, Virginia, Zelzion, Ehud, Zoccola, Didier, and Falkowski, Paul G. (2016) Comparative genomics explains the evolutionary success of reef-forming corals. eLife, 5. pp. 1-26.

Lin, Mei Fang, Chou, Wen Hwa, Kitahara, Marcelo V., Chen, Chao Lun Allen, Miller, David John, and Forêt, Sylvain (2016) Corallimorpharians are not "naked corals": insights into relationships between Scleractinia and Corallimorpharia from phylogenomic analyses. PeerJ, 4. pp. 1-16.

Raina, Jean-Baptiste, Tapiolas, Dianne, Motti, Cherie A., Foret, Sylvain, Seemann, Torsten, Tebben, Jan, Willis, Bette L., and Bourne, David G. (2016) Isolation of an antimicrobial compound produced by bacteria associated with reef-building corals. PeerJ, 4. pp. 1-20.

Moya, Aurelie, Howes, Ella L., Lacoue-Labarthe, Thomas, Forêt, Sylvain, Hanna, Bishoy, Medina, Mónica, Munday, Philip L., Ong, Jue-Sheng, Teyssié, Jean-Louis, Torda, Gergely, Watson, Sue-Ann, Miller, David J., Bijma, Jelle, and Gattuso, Jean-Pierre (2016) Near-future pH conditions severely impact calcification, metabolism and the nervous system in the pteropod Heliconoides inflatus. Global Change Biology, 22 (12). pp. 3888-3900.

Okubo, Nami, Hayward, David C., Foret, Sylvain, Ball, Eldon E., and UNSPECIFIED (2016) A comparative view of early development in the corals Favia lizardensis, Ctenactis echinata, and Acropora millepora - morphology, transcriptome, and developmental gene expression. BMC Evolutionary Biology, 16. pp. 1-12.

Bertucci, A., Forêt, S., Ball, E.E., and Miller, D.J. (2015) Transcriptomic differences between day and night in Acropora millepora provide new insights into metabolite exchange and light-enhanced calcification in corals. Molecular Ecology, 24 (17). pp. 4489-4504.

Moya, A., Huisman, L., Fêret, S., Gattuso, J-P., Hayward, D.C., Ball, E.E., and Miller, D.J. (2015) Rapid acclimation of juvenile corals to CO2-mediated acidification by upregulation of heat shock protein and Bcl-2 genes. Molecular Ecology, 24 (2). pp. 438-452.

Voolstra, Christian R., Miller, David J., Ragan, Mark A., Hoffmann, Ary A., Hoegh-Guldberg, Ove, Bourne, David G., Ball, Eldon E., Ying, Hua, Forêt, Sylvain, Takahashi, Shunichi, Weynberg, Karen D., Van Oppen, Madeleine J.H., Morrow, Kathleen, Chan, Cheong Xin, Rosic, Nedeljka, Leggat, William, Sprungala, Susanne, Imelfort, Michael, Tyson, Gene W., Kassahn, Karin S., Lundgren, Petra, Beeden, Roger J., Ravasi, Timothy, Berumen, Michael L., Abal, Eva, and Fyffe, Theresa (2015) The ReFuGe 2020 Consortium: using "omics" approaches to explore the adaptability and resilience of coral holobionts to environmental change. Frontiers in Marine Science, 2. pp. 1-8.

Bosch, Thomas C.G., Adamska, Maja, Augustin, René, Domazet-Loso, Tomislav, Foret, Sylvain, Fraune, Sebastian, Funayama, Noriko, Grasis, Juris, Hamada, Mayuko, Hatta, Masayuki, Hobmayer, Bert, Kawai, Kotoe, Klimovich, Alexander, Manuel, Michael, Shinzato, Chuya, Technau, Uli, Yum, Seungshic, and Miller, David J. (2014) How do environmental factors influence life cycles and development? An experimental framework for early-diverging metazoans. BioEssays, 36 (12). pp. 1185-1194.

Kitahara, Marcelo V., Lin, Mei-Fang, Forêt, Sylvain, Huttley, Gavin, Miller, David J., and Chen, Chaolun Allen (2014) The "naked coral" hypothesis revisited: evidence for and against Scleractinian monophyly. PLoS One, 9 (4). pp. 1-13.

Jones, David B., Jerry, Dean R., Forêt, Sylvain, Konovalov, Dmitry A., and Zenger, Kyall R. (2013) Genome-wide SNP validation and mantle tissue transcriptome analysis in the silver-lipped pearl oyster, Pinctada maxima. Marine Biotechnology, 15 (6). pp. 647-658.

Raina, Jean-Baptiste, Tapiolas, Dianne M., Foret, Sylvain, Lutz, Adrian, Abrego, David, Ceh, Janja, Seneca, Francois O., Clode, Peta L., Bourne, David G., Willis, Bette L., and Motti, Cherie A. (2013) DMSP biosynthesis by an animal and its role in coral thermal stress response. Nature, 502 (7473). pp. 677-691.

Weiss, Yvonne, Forêt, Sylvain, Hayward, David C., Ainsworth, Tracy, King, Rob, Ball, Eldon E., and Miller, David J. (2013) The acute transcriptional response of the coral Acropora millepora to immune challenge: expression of GiMAP/IAN genes links the innate immune responses of corals with those of mammals and plants. BMC Genomics, 14. pp. 1-12.

Moya, A., Huisman, L., Ball, E.E., Hayward, D.C., Grasso, L.C., Chua, C.M., Woo, H.N., Gattuso , J.-P, Forêt, S., and Miller, D.J. (2012) Whole transcriptome analysis of the coral Acropora millepora reveals complex responses to CO2-driven acidification during the initiation of calcification. Molecular Ecology, 21 (10). pp. 2440-2454.

Manuel, Michael, and Foret, Sylvain (2012) Searching for Eve: basal metazoans and the evolution of multicellular complexity. BioEssays, 34 (3). pp. 247-251.

Vieira, Filipe G., Foret, Sylvain, He, Xiaoli, Rozas, Julio, Field, Linda M., and Zhou, Jing-Jiang (2012) Unique features of odorant-binding proteins of the parasitoid wasp Nasonia vitripennis revealed by genome annotation and comparative analyses. PLoS One, 7 (8). pp. 1-11.

Miller, David, Ball, Eldon E., Foret, Sylvain, and Satoh, Nori (2011) Coral genomics and transcriptomics — ushering in a new era in coral biology. Journal of Experimental Marine Biology and Ecology, 408 (1-2). pp. 114-119.

Hayward, David C., Hetherington, Suzannah, Behm, Carolyn A., Grasso, Lauretta C., Forêt, Sylvain, Miller, David J., and Ball, Eldon E. (2011) Differential gene expression at coral settlement and metamorphosis: a subtractive hybridization study. PLoS ONE, 6 (10). pp. 1-18.

Iguchi, Akira, Shinzato, Chuya , Forêt, Sylvain, and Miller, David J. (2011) Identification of fast-evolving genes in the scleractinian Coral Acropora using comparative EST analysis. PLoS ONE, 6 (6). pp. 1-6.

Grasso, L.C. , Negri, A.P. , Fôret, S. , Saint, R. , Hayward, D.C. , Miller, D.J., and Ball, E.E. (2011) The biology of coral metamorphosis: molecular responses of larvae to inducers of settlement and metamorphosis. Developmental Biology, 353 (2). pp. 411-419.

Forêt, Sylvain, Seneca, François , De Jong, Danielle, Bieller, Annette , Hemmrich, Georg , Augustin, Rene , Hayward, David C. , Ball, Eldon E. , Bosch, Thomas C.G. , Agata, Kiyokazu , Hassel, Monika , and Miller, David J. (2011) Phylogenomics reveals an anomalous distribution of USP genes in metazoans. Molecular Biology and Evolution, 28 (1). pp. 153-161.

Graham, Nicholas A.J., Ainsworth, Tracy D., Baird, Andrew H., Ban, Natalie C., Bay, Line K., Cinner, Joshua E., De Freitas, Debora M., Diaz-Pulido, Guillermo, Dornelas, Maria, Dunn, Simon R., Fidelman, Pedro I.J., Foret, Sylvain, Good, Tatjana C., Kool, Johnathan, Mallela, Jennie, Penin, Lucie, Pratchett, Morgan S., and Williamson, David H. (2011) From microbes to people: tractable benefits of no-take areas for coral reefs. Oceanography and Marine Biology, 49. pp. 105-136.

Lyko, Frank, Foret, Sylvain, Kucharski, Robert, Wolf, Stephan, Falckenhayn, Cassandra, and Maleszka, Ryszard (2010) The honey bee epigenomes: differential methylation of brain DNA in queens and workers. PLoS Biology, 8 (11). pp. 1-12.

Jing, Junmei, Burden, Conrad J., Forêt, Sylvain, and Wilson, Susan R. (2010) Statistical considerations underpinning an alignment-free sequence comparison method. Journal of the Korean Statistical Society, 39 (3). pp. 325-335.

Forêt, Sylvain, Knack, Brent, Houliston, Evelyn, Momose, Tsuyoshi, Manuel, Michael, Quéinnec, Eric, Hayward, David C., Ball, Eldon E., and Miller, David J. (2010) New tricks with old genes: the genetic bases of novel cnidarian traits. Trends in Genetics, 26 (4). pp. 154-158.

Werren, John H., Richards, Stephen, Desjardins, Christopher A., Niehuis, Oliver, Gadau, Jurgen, Colbourne, John K., Beukeboom, Leo W., Desplan, Claude, Elsik, Christine G., Grimmelikhuijzen, Cornelis J.P., Kitts, Paul, Lynch, Jeremy A., Murphy, Terence, Oliveria, Deodoro C.S.G., Smith, Christopher D., van de Zande, Louis, Worley, Kim C., Zdobnov, Evgeny M., Aerts, Maarten, Albert, Stefan, Anaya, Victor H., Anzola, Juan M., Barchuk, Angel R., Behura, Susanta, Bera, Agata N., Berenbaum, May R., Bertossa, Rinaldo C., Bitonda, Marcia M.G., Bordenstein, Seth R., Bork, Peer, Bornberg-Bauer, Erich, Brunain, Marleen, Cazzamali, Giuseppe, Chaboub, Lesley, Chacko, Joseph, Chavez, Dean, Childers, Christopher P., Choi, Jeong-Hyeon, Clarke, Michael E., Claudianos, Charles, Clinton, Rochelle A., Cree, Andrew G., Cristino, Alexandre S., Dang, Phat M., Darby, Alistair C., de Graaf, Dirk C., Devreese, Bart, Dinh, Huyen H., Edwards, Rachel, Elango, Navin, Elhaik, Eran, Ermolaeva, Olga, Evans, Jay D., Foret, Sylvain, Fowler, Gerald R., Gerlach, Daniel, Gibson , Joshua D., Gilbert, Donald G., Graur, Dan, Grunder, Stefan, Hagen, Darren E., Han, Yi, Hauser, Frank, Hultmark, Da, Hunter IV, Henry C., Hurst, Gregory D.D., Jhangian, Shatini N., Jiang, Huaiyang, Johnson, Reed M., Jones, Andrew K., Junier, Thomas, Kadowaki, Tatsuhiko, Kamping, Albert, Kapustin, Yuri, Kechavarzi, Bobak, Kim, Jaebum, Kim, Jay, Kiryutin, Boris, Koevoets, Tosca, Kovar, Christie L., Kriventseva, Evgenia V., Kucharski, Robert, Lee, Heewook, Lee, Sandra L., Lees, Kristin, Lewis, Lora R., Loehlin, David W., Logsdon Jr, John M., Lopez, Jacqueline A., Lozado, Ryan J., Maglott, Donna, Maleszka, Ryszard, Mayampurath, Anoop, Mazur, Danielle J., McClure, Marcella A., Moore, Andrew D., Morgan, Margaret B., Muller, Jean, Munoz-Torres, Monica C., Muzny, Donna M., Nazareth, Lynne V., Neupert, Susanne, Nguyen, Ngoc B., Nunes, Francis M.F., Oakeshott, John G., Okwuonu, Geoffrey O., Pannebakker, Bart A., Pejavar, Vikas R., Peng, Zuogang, Pratt, Stephen C., Predel, Reinhard, Pu, Ling-Ling, Ranson, Hilary, Raychoudhury, Rhitoban, Rechteiner, Andreas, Reese, Justin T., Reid, Jeffrey G., Riddle, Megan, Robertson, Il Hugh M., Romero-Severson, Jeanne, Rosenberg, Miriam, Sackton, Timothy B., Sattele , David B., Schluns, Helge, Schmitt, Thomas, Schneider, Martina, Schuler, Andreas, Schurko, Andrew M., Shuker , David M., Simoes, Zila L.P., Sinha, Saurabh, Smith, Zachary, Solovyev, Victor, Souvorov, Alexandre, Springauf, Andreas, Stafflinger, Elisabeth, Stage, Deborah E., Stanke, Mario, Tanaka, Yoshiaki, Telschow, Arndt, Trent, Carol, Vattathil, Selina, Verhulst, Eveline C., Viljakainen, Lumi, Wanner, Kevin W., Waterhouse, Robert M., Whitfield, James B., Wilkes, Timothy E., Williamson, Michael, Willis, Judith H., Wolschin, Florian, Wyder, Stefan, Yamada, Takuji, Yi, Soojin V., Zecher, Courtney N., Zhange, Lan, and Gibbs, Richard A. (2010) Functional and Evolutionary Insights from the Genomes of Three Parasitoid Nasonia Species. Science, 327 (5963). pp. 343-348.

Forêt, Sylvain, Kucharski, Robert, Pittlekow, Yvonne, Lockett, Gabrielle A., and Maleszka, Ryszard (2009) Epigenetic regulation of the honey bee transcriptome: unravelling the nature of methylated genes. BMC Genomics, 10. pp. 1-11.

Forêt, Sylvain, Wilson, Susan R., and Burden, Conrad J. (2009) Characterizing the D2 statistic: word matches in biological sequences. Statistical Applications in Genetics and Molecular Biology, 8 (1). pp. 1-10.

Forêt, Sylvain, Wilson, Susan R., and Burden, Conrad J. (2009) Empirical distribution of k-word matches in biological sequences. Pattern Recognition, 42 (4). pp. 539-548.

Forêt, S., Kassahn, K.S., Grasso, L.C., Hayward, D.C., Iguchi, A., Ball, E.E., and Miller, D.J. (2007) Genomic and microarray approaches to coral reef conservation biology. Coral Reefs, 26 (3). pp. 475-486.

This list was generated on Wed Oct 18 04:57:27 2017 AEST.