C

Cantacessi, Cinzia, Campbell, Bronwyn E., and Gasser, Robin B. (2012) Key strongylid nematodes of animals: impact of next-generation transcriptomics on systems biology and biotechnology. Biotechnology Advances, 30 (3). pp. 469-488.

Cantacessi, C., Campbell, B.E., Jex, A.R., Young, N.D., Hall, R.S., Ranganathan, S., and Gasser, R.B. (2012) Bioinformatics meets parasitology. Parasite Immunology, 34 (5). pp. 265-275.

Cantacessi, Cinzia, Gasser, Robin B., Strube, Christina, Schnieder, Thomas, Jex, Aaron R., Hall, Ross S., Campbell, Bronwyn E., Young, Neil D., Ranganathan, Shoba, Sternberg, Paul W., and Mitreva, Makedonka (2011) Deep insights into Dictyocaulus viviparus transcriptomes provides unique prospects for new drug targets and disease intervention. Biotechnology Advances, 29 (3). pp. 261-271.

Cantacessi, Cinzia, Mitreva, Makedonka, Campbell, Bronwyn E., Hall, Ross S., Young , Neil D., Jex, Aaron R., Ranganathan, Shoba, and Gasser, Robin B. (2010) First transcriptomic analysis of the economically important parasitic nematode, Trichostrongylus colubriformis, using a next-generation sequencing approach. Infection, Genetics and Evolution, 10 (8). pp. 1199-1207.

Cantacessi, Cinzia, Jex, Aaron R., Hall, Ross S., Young, Neil D., Campbell, Bronwyn E., Joachim, Anja, Nolan, Matthew J., Abubucker, Sahar, Sternberg, Paul W., Ranganatha, Shoba, Mitreva , Makedonka, and Gasser, Robin B. (2010) A practical, bioinformatic workflow system for large datasets generated by next-generation sequencing. Nucleic Acids Research, 38 (17). e171. pp. 1-12.

Cantacessi, C., Zou, F.C., Hall, R.S., Zhong, W., Jex, A.R., Campbell, B.E., Ranganathan, S., Sternberg, P.W., Zhu, X.Q., and Gasser, R.B. (2009) Bioinformatic analysis of abundant, gender-enriched transcripts of adult Ascaris suum (Nematoda) using a semi-automated workflow platform. Molecular and Cellular Probes, 23 (5). pp. 205-217.

Cantacessi, Cinzia, Riddell, Shane, Morris, Genevieve M., Doran, Timothy, Woods, Wayne G., Otranto, Domenico, and Gasser, Robin B. (2008) Genetic characterization of three unique operational taxonomic units of Eimeria from chickens in Australia based on nuclear spacer ribosomal DNA. Veterinary Parasitology, 152 (3-4). pp. 226-234.

D

Damerla, Rama Rao, Chatterjee, Bishwanath, Li, You, Francis, Richard J.B., Fatakia, Sarosh N., and Lo, Cecilia W. (2014) Ion Torrent sequencing for conducting genome-wide scans for mutation mapping analysis. Mammalian Genome, 25 (3-4). pp. 120-128.

F

Field, Matthew A., Cho, Vicky, Andrews, T. Daniel, and Goodnow, Chris C. (2015) Reliably detecting clinically important variants requires both combined variant calls and optimized filtering strategies. PLoS ONE, 10 (11). e0143199. pp. 1-19.

Field, Matthew A., Cho, Vicky, Cook, Matthew C., Enders, Anselm, Vinuesa, Carola G., Whittle, Belinda, Andrews, T. Daniel, and Goodnow, Chris C. (2015) Reducing the search space for causal genetic variants with VASP. Bioinformatics, 31 (14). pp. 2377-2379.

G

Gasser, Robin, and Cantacessi, Cinzia (2011) Heartworm genomics: unprecedented opportunities for fundamental molecular insights and new intervention strategies. Topics in Companion Animal Medicine, 26 (4). pp. 193-199.

Gasser, Robin B., Cantacessi, Cinzia, Campbell, Bronwyn E., Hofmann, Andreas, and Otranto, Domenico (2011) Major prospects for exploring canine vector-borne diseases and novel intervention methods using 'omic technologies. Parasites & Vectors, 4 (April). 53. pp. 1-10.

J

Jex, Aaron R., Liu, Shiping, Li, Bo, Young, Neil D., Hall, Ross S., Li, Yingrui, Yang, Lifeng, Zeng, Na, Xu, Xun, Xiong, Zijun, Chen, Fangyuan, Wu, Xuan, Zhang, Guojie, Fang, Xiaodong, Kang, Yi, Anderson, Garry A., Harris, Todd W., Campbell, Bronwyn E., Vlaminck, Johnny, Wang, Tao, Cantacessi, Cinzia, Schwarz, Erich M., Ranganathan, Shoba, Geldhof, Peter, Nejsum, Peter, Sternberg, Paul W., Yang, Huanming, Wang, Jun, Wang, Jian, and Gasser, Robin B. (2011) Ascaris suum draft genome. Nature, 479. pp. 529-533.

K

Konovalov, Dmitry A., Manning, Clint, and Henshaw, Michael T. (2004) KINGROUP: a program for pedigree relationship reconstruction and kin group assignments using genetic markers. Molecular Ecology Notes, 4 (4). pp. 779-782.

M

Miosge, Lisa A., Field, Matthew A. , Sontani, Yovina, Cho, Vicky, Johnson, Simon, Palkova, Anna, Balakishnan, Bhavani, Liang, Rong, Zhang, Yafei, Lyon, Stephen, Beutler, Bruce, Whittle, Belinda, Bertram, Edward M., Enders, Anselm, Goodnow, Christopher C., and Andrews, T. Daniel (2015) Comparison of predicted and actual consequences of missense mutations. Proceedings of the National Academy of Sciences of the United States of America, 112 (37). E5189-E5198.

Mangiola, Stefano, Young, Neil D., Korhonen, Pasi, Mondal, Alinda, Scheerlinck, Jean-Pierre, Sternberg, Paul W., Cantacessi, Cinzia, Hall, Ross S., Jex, Aaron R., and Gasser, Robin B. (2013) Getting the most out of parasitic helminth transcriptomes using HelmDB: implications for biology and biotechnology. Biotechnology Advances, 31 (8). pp. 1109-1119.

R

Robertson, Gordon, Schein, Jacqueline, Chiu, Readman, Corbett, Richard, Field, Matthew, Jackman, Shaun D., Mungall, Karen, Lee, Sam, Okada, Hisanaga Mark, Qian, Jenny Q., Griffith, Malachi, Raymond, Anthony, Thiessen, Nina, Cezard, Timothee, Butterfield, Yaron S., Newsome, Richard, Chan, Simon K., She, Rong, Varhol, Richard, Kamoh, Baljit, Prabhu, Anna-Liisa, Tam, Angela, Zhao, YongJun, Moore, Richard A., Hirst, Martin, Marra, Marco A,, Jones, Steven J.M., Hoodless, Pamela A., and Birol, Inanc (2010) De novo assembly and analysis of RNA-seq data. Nature Methods, 7 (11). pp. 909-912.

W

Waardenberg, Ashley J., Bassett, Samuel D., Bouveret, Romaric, and Harvey, Richard P. (2015) CompGO: an R package for comparing and visualizing gene ontology enrichment differences between DNA binding experiments. BMC Bioinformatics, 16. 275.

Y

Young, Neil D., Jex, Aaron R., Lo, Bo, Liu, Shiping, Yang, Linfeng, Xiong, Zijun, Li, Yingrui, Cantacessi, Cinzia, Hall, Ross S., Xu, Xun, Chen, Fangyuan, Wu, Xuan, Zerlotini, Adhemar, Oliveira, Guilherme, Hofmann, Andreas, Zhang, Guojie, Fang, Xiaodong, Kang, Yi, Campbell, Bronwyn E., Loukas, Alex, Ranganathan, Shoba, Rollinson, David, Rinaldi, Gabriel, Brindley, Paul J., Yang, Huanming, Wang, Jun, Wang, Jian, and Gasser, Robin B. (2012) Whole-genome sequence of Schistosoma haematobium. Nature Genetics, 44 (2). pp. 221-225.

Young, Neil D., Jex, Aaron R., Cantacessi, Cinzia, Hall, Ross S., Campbell, Bronwyn E., Spithill, Terence W., Tangkawattana, Sirikachorn, Tangkawattana, Prasarn, Laha, Thewarach, and Gasser, Robin B. (2011) A portrait of the transcriptome of the neglected trematode, Fasciola gigantica: biological and biotechnological implications. PLoS Neglected Tropical Disease, 5 (2). e1004. pp. 1-12.

Young, Neil D., Hall, Ross S., Jex, Aaron R., Cantacessi, Cinzia, and Gasser, Robin B. (2010) Elucidating the transcriptome of Fasciola hepatica: a key to fundamental and biotechnological discoveries for a neglected parasite. Biotechnology Advances, 28 (2). pp. 222-231.