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Agha, Ramsy, Lezcano, María Ángeles, Labrador, María del Mar, Cirés, Samuel, and Quesada, Antonio (2014) Seasonal dynamics and sedimentation patterns of Microcystis oligopeptide-based chemotypes reveal subpopulations with different ecological traits. Limnology and Oceanography, 59 (3). pp. 861-871.

Ainsworth, Tracy D., Thurber, Rebecca Vega, and Gates, Ruth D. (2010) The future of coral reefs: a microbial perspective. Trends in Ecology and Evolution, 25 (4). pp. 233-240.

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Buerger, Patrick (2017) Viruses: contributors to and mitigators of black band disease in corals. PhD thesis, James Cook University.

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Bourne, David G., Dennis, Paul G., Uthicke, Sven, Soo, Rochelle M., Tyson, Gene W., and Webster, Nicole (2013) Coral reef invertebrate microbiomes correlate with the presence of photosymbionts. ISME Journal: multidisciplinary journal of microbial ecology, 7. pp. 1452-1458.

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Bell, Sara Christiane (2012) The role of cutaneous bacteria in resistance of Australian tropical rainforest frogs to the amphibian chytrid fungus Batrachochytrium dendrobatidis. PhD thesis, James Cook University.

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Boyett, Holly Virginia (2006) The ecology and microbiology of black band disease and brown band syndrome on the Great Barrier Reef. Masters (Research) thesis, James Cook University.

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Casey, Jordan M, Connolly, Sean R., and Ainsworth, Tracy D. (2015) Coral transplantation triggers shift in microbiome and promotion of coral disease associated potential pathogens. Scientific Reports, 5. 11903. pp. 1-11.

Chidambarampadmavathy, Karthigeyan, Kartikeyan, Obulisamy P., and Heimann, Kirsten (2015) Role of copper and iron in methane oxidation and bacterial biopolymer accumulation. Engineering in Life Sciences, 15. pp. 387-399.

Casey, Jordan Marie (2015) The role of territorial grazers in coral reef trophic dynamics from microbes to apex predators. PhD thesis, James Cook University.

Ceh, Janja, Kilburn, Matt R., Cliff, John B., Raina, Jean-Baptiste, van Keulen, Mike, and Bourne, David G. (2013) Nutrient cycling in early coral life stages: Pocillopora damicornis larvae provide their algal symbiont (Symbiodinium) with nitrogen acquired from bacterial associates. Ecology and Evolution, 3 (8). pp. 2393-2400.

Corkeron, M.L., Norton, R., and Nelson, P.N. (2010) Spatial analysis of melioidosis distribution in a suburban area. Epidemiology and Infection, 138 (9). pp. 1346-1352.

Carter, David O. (2005) Forensic taphonomy: processes associated with cadaver decomposition in soil. PhD thesis, James Cook University.

D

Dieme, Constentin, Parola, Philippe, Guernier, Vanina, Lagadec, Erwan, Le Minter, Gildas, Balleydier, Elsa, Pagès, Frederic, Dellagi, Koussay, Tortosa, Pablo, Raoult, Didier, and Socolovschi, Cristina (2015) Rickettsia and Bartonella species in fleas from Reunion Island. American Journal of Tropical Medicine and Hygiene, 92 (3). pp. 617-619.

Daskin, Joshua H., Bell, Sara C., Schwarzkopf, Lin, and Alford, Ross A. (2014) Cool temperatures reduce antifungal activity of symbiotic bacteria of threatened amphibians: implications for disease management and patterns of decline. PLoS ONE, 9 (6). e100378. pp. 1-9.

Dale, Julia, Price, Erin P., Hornstra, Heidie, Busch, Joseph D., Mayo, Mark, Godoy, Daniel, Wuthiekanun, Vanaporn, Baker, Anthony, Foster, Jeffrey T., Wagner, David M., Tuanyok, Apichai, Warner, Jeffrey, Spratt, Brian G., Peacock, Sharon J, Currie, Bart J., Keim, Paul, and Pearson, Talima (2011) Epidemiological Tracking and Population Assignment of the Non-Clonal Bacterium, Burkholderia pseudomallei. PLoS Neglected Tropical Disease, 5 (12). e1381. pp. 1-17.

Dove, Sophie, Ortiz, Juan Carlos, Enriquez, Susana, Fine, Maoz, Fisher, Paul, Iglesias-Prieto, Roberto, Thornhill, Dan, and Hoegh-Guldberg, Ove (2006) Response of holosymbiont pigments from the scleractinian coral Montipora monasteriata to short-term heat stress. Limnology and Oceanography, 51 (2). pp. 1149-1158.

Dove, Sophie (2004) Scleractinian corals with photoprotective host pigments are hypersensitive to thermal bleaching. Marine Ecology Progress Series, 272. pp. 99-116.

F

Freckelton, Marnie Louise (2015) Quorum sensing in Australian soft corals. PhD thesis, James Cook University.

Firth, Cadhla, Bhat, Meera, Firth, Matthew A., Williams, Simon H., Frye, Matthew J., Simmonds, Peter, Conte, Juliette M., Ng, James, Garcia, Joel, Bhuva, Nishit P., Lee, Bohyun, Che, Xiaoyu, Quan, Phenix-Lan, and Lipkin, W. Ian (2014) Detection of zoonotic pathogens and characterization of novel viruses carried by commensal Rattus norvegicus in New York City. mBio, 5 (5). e01933-14.

Firth, Cadhla, Tokarz, Rafal, Simith, Darlene B., Nunes, Marcio R.T., Bhat, Meera, Rosa, Elizabeth S.T., Medeiros, Daniele B.A., Palacios, Gustavo, Vasconcelos, Pedro F.C., and Lipkin, W. Ian (2012) Diversity and Distribution of Hantaviruses in South America. Journal of Virology, 86 (24). pp. 13756-13766.

Fine, M., Roff, G., Ainsworth, T.D., and Hoegh-Guldberg, O. (2006) Phototrophic microendoliths bloom during coral "white syndrome". Coral Reefs, 25 (4). pp. 577-581.

G

Glasl, Bettina (2019) Microbial indicators for environmental stress and ecosystem health assessments. PhD thesis, James Cook University.

Guernier, Vanina, Lagadec, Erwan, LeMinter, Gildas, Licciardi, Séverine, Balleydier, Elsa, Pagès, Frédéric, Laudisoit, Anne, Dellagi, Koussay, and Tortosa, Pablo (2014) Fleas of small mammals on Reunion Island: diversity, distribution and epidemiological consequences. PLoS Neglected Tropical Diseases, 8 (9). e3129. pp. 1-10.

Garren, Melissa, Son, Kwangmin, Raina, Jean-Baptiste, Rusconi, Roberto, Menolascina, Filippo, Shapiro, Orr H., Tout, Jessica, Bourne, David G., Seymour, Justin R., and Stocker, Roman (2014) A bacterial pathogen uses dimethylsulfoniopropionate as a cue to target heat-stressed corals. ISME Journal, 8. pp. 999-1007.

Grand, Alexandra, Pratchett, Morgan, and Rivera-Posada, Jairo (2014) The immune response of Acanthaster planci to oxbile injections and antibiotic treatment. Journal of Marine Biology, 2014. 769356. pp. 1-11.

Gehringer, Michelle M., Adler, Lewis, Roberts, Alexandra A., Moffitt, Michelle C., Mihali, Troco K., Mills, Toby J.T., Fieker, Claus, and Neilan, Brett A. (2012) Nodularin, a cyanobacterial toxin, is synthesized in planta by symbiotic Nostoc sp. ISME Journal, 6 (10). pp. 1834-1847.

Glas, Martin S., Motti, Cherie A., Negri, Andrew P., Sato, Yui, Froscio, Suzanne, Humpage, Andrew R., Krock, Bernd, Cembella, Allan, and Bourne, David G (2010) Cyanotoxins are not implicated in the etiology of coral black band disease outbreaks on Pelorus Island, Great Barrier Reef. FEMS Microbiology Ecology, 73 (1). pp. 43-54.

H

Hernández Agreda, Alejandra Isabel (2018) Deciphering the bacterial microworld in corals: structure, variability and persistence. PhD thesis, James Cook University.

Hess, Sybille, Wenger, Amelia S., Ainsworth, Tracy D., and Rummer, Jodie L. (2015) Exposure of clownfish larvae to suspended sediment levels found on the Great Barrier Reef: impacts on gill structure and microbiome. Scientific Reports, 5. 10561. pp. 1-8.

Hendrarto, Ignatius Boedi (1992) Distribution and abundance of benthic diatoms in a tropical mangrove forest and effects of grazing on them by Telescopium telescopium (Linnaeus, 1758). PhD thesis, James Cook University of North Queensland.

J

James, Timothy Y., Litvintseva, Anastasia P., Vilgalys, Rytas, Morgan, Jess A.T., Taylor, John W., Fisher, Matthew C., Berger, Lee, Weldon, Ché, du Preez, Louis, and Longcore, Joyce E. (2009) Rapid global expansion of the fungal disease chytridiomycosis into declining and healthy amphibian populations. PLoS Pathogens, 5 (5). - .

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Kleinteich, J., Hildebrand, F., Wood, S.A., Cirés, Samuel, Agha, R., Quesada, A., Pearce, D.A., Convey, P., Küpper, F.C., and Dietrich, D.R. (2014) Diversity of toxin and non-toxin containing cyanobacterial mats of meltwater ponds on the Antarctic Peninsula: a pyrosequencing approach. Antarctic Science, 26 (5). pp. 521-532.

Kosch, Tiffany A., Morales, Victor, and Summers, Kyle (2012) Batrachochytrium dendrobatidis in Peru. Herpetological Review, 43 (2). pp. 288-293.

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Lema, Kimberley A., Willis, Bette L., and Bourne, David G. (2014) Amplicon pyrosequencing reveals spatial and temporal consistency in diazotroph assemblages of the Acropora millepora microbiome. Environmental Microbiology, 16 (10). pp. 3345-3359.

Lema, Kimberley A., Bourne, David G., and Willis, Bette L. (2014) Onset and establishment of diazotrophs and other bacterial associates in the early life history stages of the coral Acropora millepora. Molecular Ecology, 23 (19). pp. 4682-4695.

Lagadec, Erwan, Gomard, Yann, Guernier, Vanina, Dietrich, Muriel, Pascalis, Hervé, Temmam, Sarah, Ramasindrazana, Beza, Goodman, Steven M., Tortosa, Pablo, and Dellagi, Koussay (2012) Pathogenic Leptospira spp. in bats, Madagascar and Union of the Comoros. Emerging Infectious Diseases, 18 (10). pp. 1696-1698.

Luter, Heidi M. (2011) The effects of disease and stress on the microbial community of the sponge Ianthella basta. PhD thesis, James Cook University.

Luter, Heidi M., Whalan, Steve, and Webster, Nicole S. (2010) Exploring the role of microorganisms in the disease-like syndrome affecting the sponge Ianthella basta. Applied and Environmental Microbiology, 76 (17). pp. 5736-5744.

Littman, Raechel A., Bourne, David G., and Willis, Bette L. (2010) Responses of coral-associated bacterial communities to heat stress differ with Symbiodinium type on the same coral host. Molecular Ecology, 19 (9). pp. 1978-1990.

Ludvianto, Bayu (1992) A study on the biology of Osangularia cf. venusta (Brady): an epiphytic foraminifera on the intertidal seagrass Halodule uninervis in Shelly Bay, Townsville, North Queensland. PhD thesis, James Cook University of North Queensland.

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Macreadie, Peter, York, Paul, Rasheed, Michael, Bryant, Catherine, Ricart, Aurora, Nielsen, Daniel, Fontes, Maria, Atwood, Tricia, Seymour, Justin, Petrou, Katherina, Kelleway, Jeffrey, Thomson, Alexandra, Trevathan-Tackett, Stacey, Connolly, Rod, and Ralph, Peter (2015) Hot spots and hot moments in seagrass 'blue carbon' science. In: Abstracts from 52nd Australian Marine Science Association Conference. p. 206. From: AMSA 2015: Australian Marine Science Association: Estuaries to Oceans, 5-9 July 2015, Geelong, Victoria.

Marquis, C.P., Baird, A.H., de Nys, R., Holmström, C., and Koziumi, N. (2005) An evaluation of the antimicrobial properties of the eggs of 11 species of scleractinian corals. Coral Reefs, 24 (2). pp. 248-253.

N

Nicolet, K.J., Hoogenboom, M.O., Gardiner, N.M., Pratchett, M.S., and Willis, B.L. (2013) The corallivorous invertebrate Drupella aids in transmission of brown band disease on the Great Barrier Reef. Coral Reefs, 32 (2). pp. 585-595.

O

Ogawa, Daisie R. (2014) The effects of climate change on the Acropora aspera holobiont. PhD thesis, James Cook University.

Olson , N.D., Ainsworth, T.D., Gates, R.D., and Takabayashi, M. (2009) Diazotrophic bacteria associated with Hawaiian Montipora corals: diversity and abundance in correlation with symbiotic dinoflagellates. Journal of Experimental Marine Biology and Ecology, 371 (2). pp. 140-146.

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Quan, Phenix-Lan, Firth, Cadhla, Conte, Juliette M., Williams, Simon H., Zambrana-Torrelio, Carlos M., Anthony, Simon J., Ellison, James A., Gilbert, Amy T., Kuzmin, Ivan V., Niezgoda, Michael, Osinubi, Modupe O.V., Recuenco, Sergio, Markotter, Wanda, Breiman, Robert F., Kalemba, Lems, Malekani, Jean, Lindblade, Kim A., Rostal, Melinda K., Ojeda-Flores, Rafael, Suzan, Gerardo, Davis, Lora B., Blau, Dianna M., Ogunkoya, Albert B., Alvarez Castillo, Danilo A., Moran, David, Ngam, Sali, Akaibe, Dudu, Agwanda, Bernard, Briese, Thomas, Epstein, Jonathan H., Daszak, Peter, Rupprecht, Charles E., Holmes, Edward C., and Lipkin, W. Ian (2013) Bats are a major natural reservoir for hepaciviruses and pegiviruses. Proceedings of the National Academy of Sciences of the United States of America, 110 (20). pp. 8194-8199.

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Razaghi, Ali, Kartik, Obulisamy, Owens, Leigh, and Heimann, Kirsten (2014) Methane oxidation by the oleaginous yeast, Rhodotorula glutinis – fact or fiction? In: [Presented at the North Queensland Festival of Life Sciences 2014]. From: North Queensland Festival of Life Sciences 2014, 5 November 2014, Townsville, QLD, Australia.

Raina, Jean-Baptiste (2013) Production and fate of dimethylsulfoniopropionate (DMSP) in reef-building corals and its integral role in coral health. PhD thesis, James Cook University.

Roberts, Alexandra A., Schultz, Andrew W., Kersten, Roland D., Dorrestein, Pieter C., and Moore, Bradley S. (2012) Iron acquisition in the marine actinomycete genus Salinispora is controlled by the desferrioxamine family of siderophores. FEMS Microbiology Letters, 335 (2). pp. 95-103.

Rowley, Jodi J.L. (2006) Why does Chytridiomycosis drive some frog populations to extinction and not others?: the effects of interspecific variation in host behaviour. PhD thesis, James Cook University.

S

Shein, Karsten, Loder, Jennifer, Bourne, David G., and Galvis, Nohora (2016) Citizen Science: the next big leap. In: Proceedings of the 13th International Coral Reef Symposium. pp. 590-598. From: 13th International Coral Reef Symposium, 19-24 June 2016, Honolulu, HI, USA.

Sato, Yui (2012) Ecology and microbiology of black band disease: new insights into the etiology of an old coral disease. PhD thesis, James Cook University.

Shipton, W.A., Baker, A., Blaney, B.J., Horwood, P.F., Warner, J.M., Pelowa, D., and Greenhill, A.R. (2011) Nitrogen fixation associated with sago (Metroxylon sagu) and some implications. Letters in Applied Microbiology, 52 (1). pp. 56-61.

Sussman, Meir (2009) Coral disease pathogens of the Indo-Pacific Ocean. PhD thesis, James Cook University.

Steger, Doris, Ettinger-Epstein, Piers, Whalan, Stephen, Hentschel, Ute, de Nys, Rocky, Wagner, Michael, and Taylor, Michael W. (2008) Diversity and mode of transmission of ammonia-oxidizing archaea in marine sponges. Environmental Microbiology, 10 (4). pp. 1087-1094.

Schlick-Steiner, Birgit C., Steiner, Florian M., Konrad, Heino, Seifert, Bernhard, Christian, Erhard, Moder, Karl, Stauffer, Christian, and Crozier, Ross H. (2008) Specificity and transmission mosaic of ant nest-wall fungi. National Academy of Sciences. Proceedings, 105 (3). pp. 940-944.

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Scardino, Andrew J. (2006) Biomimetic fouling control. PhD thesis, James Cook University.

T

Taylor, Michael W., Schupp, Peter J., Baillie, Harriet J., Charlton, Timothy S., de Nys, Rocky, Kjelleberg, Staffan, and Steinberg, Peter D. (2004) Evidence for Acyl Homoserine Lactone signal production in bacteria associated with marine sponges. Applied and Environmental Microbiology, 70 (7). pp. 4387-4389.

V

Vasilakis, Nikos, Guzman, Hilda, Firth, Cadhla, Forrester, Naomi L., Widen, Steven G., Wood, Thomas G., Rossi, Shannan L., Ghedin, Elodie, Popov, Vsevolov, Blasdell, Kim R., Walker, Peter J., and Tesh, Robert B. (2014) Mesoniviruses are mosquito-specific viruses with extensive geographic distribution and host range. Virology Journal, 11. 97.

W

Wessels, Wiebke (2016) Molecular bases of soft coral reproduction. PhD thesis, James Cook University.

Webster, Nicole S., Cobb, Rose E., Soo, Rochelle, Anthony, Shelley L., Battershill, Christopher N., Whalan, Stephen, and Evans-Illidge, Elizabeth (2011) Bacterial community dynamics in the marine sponge Rhopaloeides odorabile under in situ and ex situ cultivation. Marine Biotechnology, 13 (2). pp. 296-304.

Webster, Nicole S., Taylor, Michael W., Behnam, Faris, Lücker, Sebastian, Rattei, Thomas, Whalan, Stephen, Horn, Matthias, and Wagner, Michael (2010) Deep sequencing reveals exceptional diversity and modes of transmission for bacterial sponge symbionts. Environmental Microbiology, 12 (8). pp. 2070-2082.

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Woodhams, Douglas Craig (2003) The ecology of chytridiomycosis, an emerging infectious disease of Australian rainforest frogs. PhD thesis, James Cook University.