A

Aviat, Florence, Slamti, Leyla, Cerqueira, Gustavo M., Lourdault, Kristel, and Picardeau, Mathieu (2010) Expanding the genetic toolbox for Leptospira species by generation of fluorescent bacteria. Applied and Environmental Microbiology, 76 (24). pp. 8135-8142.

B

Bourne, David G., Dennis, Paul G., Uthicke, Sven, Soo, Rochelle M., Tyson, Gene W., and Webster, Nicole (2013) Coral reef invertebrate microbiomes correlate with the presence of photosymbionts. ISME Journal: multidisciplinary journal of microbial ecology, 7. pp. 1452-1458.

Baird, Fiona J., and Smooker, Peter M. (2011) Cured by DNA-genetic immunization in the therapeutic sector. In: Donnelly, Erin C., and Dixon, Arthur M., (eds.) DNA vaccines : types, advantages, and limitations. Nova Science, New York, NY, USA, pp. 147-161.

C

Chidambarampadmavathy, Karthigeyan, Obulisamy, Kartik P., and Heimann, Kirsten (2015) Biopolymers made from methane in bioreactors. Engineering in Life Sciences, 15 (7). pp. 689-699.

Cerqueira, Gustavo M., Kostoulias, Xenia, Khoo, Chen, Aibinu, Ibukun, Qu, Yue, Traven, Ana, and Peleg, Anton Y. (2014) A global virulence regulator in Acinetobacter baumannii and its control of the phenylacetic acid catabolic pathway. Journal of Infectious Diseases, 210 (1). pp. 46-55.

Cerqueira, Gustavo M., Souza, Natalie M., Araújo, Eduardo R., Barros, Aline T., Morais, Zenaide M., Vasconcellos, Sílvio A., and Nascimento, Ana L.T.O. (2011) Development of transcriptional fusions to assess Leptospira interrogans promoter activity. PLoS ONE, 6. e17409. pp. 1-16.

Cerqueira, Gustavo M., McBride, Alan J.A., Queiroz, Adriano, Pinto, Luciano S., Silva, Éverton F., Hartskeerl, Rudy A., Reis, Mitermayer G., Ko, Albert I., and Dellagostin, Odir A. (2010) Monitoring Leptospira strain collections: the need for quality control. American Journal of Tropical Medicine and Hygiene, 82 (1). pp. 83-87.

Cano-Gómez, Ana, Goulden, Evan F., Owens, Leigh, and Høj, Lone (2010) Vibrio owensii sp. nov., isolated from cultured crustaceans in Australia. FEMS Microbiology Reviews, 302 (2). pp. 175-181.

Cerqueira, Gustavo M., McBride, Alan J.A., Hartskeerl, Rudy A., Ahmed, Nyiaz, Dellagostin, Odir A., Eslabão, Marcus R., and Nascimento, Ana L.T. (2010) Bioinformatics describes novel Loci for high resolution discrimination of leptospira isolates. PLoS ONE, 5. e15335. pp. 1-7.

Cerqueira, Gustavo M., McBride, Alan J.A., Picardeau, Mathieu, Ribeiro, Samuel G., Moreira, Ângela N., Morel, Viviane, Reis, Mitermayer G., Ko, Albert I., and Dellagostin, Odir A. (2009) Distribution of the leptospiral immunoglobulin-like (lig) genes in pathogenic Leptospira species and application of ligB to typing leptospiral isolates. Journal of Medical Microbiology, 58. pp. 1173-1181.

Cerqueira, Gustavo M., and Picardeau, Mathieu (2009) A century of Leptospira strain typing. Infection, Genetics and Evolution, 9 (5). pp. 760-768.

Cerqueira, G., Silva, E., Seixas, F., Athanazio, D., Amaral, M., Vasconcelos, F., Hartwig, D., Ribeiro, S., and Dellagostin, O. (2009) Use of naked DNA immunization for screening of leptospiral antigens as potential vaccinogens. International Journal of Antimicrobial Agents, 34 (Supplement 2). P162. S78 - S78.

Carfarchia, Claudia, Otranto, Domenico, Weigl, Stephania, Campbell, Bronwyn E., Parisi, Antonio, Cantacessi, Cinzia, Mancianti, Francesca , Danesi, Patrizia , and Gasser, Robin B. (2009) Molecular characterization of selected dermatophytes and their identification by electrophoretic mutation scanning. Electrophoresis, 30 (20). pp. 3555-3564.

Cantacessi, Cinzia, Riddell, Shane, Morris, Genevieve M., Doran, Timothy, Woods, Wayne G., Otranto, Domenico, and Gasser, Robin B. (2008) Genetic characterization of three unique operational taxonomic units of Eimeria from chickens in Australia based on nuclear spacer ribosomal DNA. Veterinary Parasitology, 152 (3-4). pp. 226-234.

E

Elliman, Jennifer, Burgess, Graham, Owens, Leigh, Ariel, Ellen, La Fauce, Kathy, and Govan, Brenda (2011) Development of a short course on molecular techniques with application for the aquaculture industry. In: Australasian Scientific Conference on Aquatic Animal Health. From: First Australasian Scientific Conference on Aquatic Animal Health , 5-8 July 2011, Cairns. (Unpublished)

Elliman, Jennifer (2006) Bacteriophage of Burkholderia pseudomallei: friend or foe? PhD thesis, James Cook University.

F

Firth, Cadhla, Kitchen, Andrew, Shapiro, Beth, Suchard, Marc A., Holmes, Edward C., and Rambaut, Andrew (2010) Using Time-Structured Data to Estimate Evolutionary Rates of Double-Stranded DNA Viruses. Molecular Biology and Evolution, 27 (9). pp. 2038-2051.

G

Geraylou, Zahra, Souffreau, Caroline, Rurangwa, Eugene, Maes, Gregory E., Spanier, Katina I., Courtin, Christophe M., Delcour, Jan A., Buyse, Johan, and Ollevier, Frans (2013) Prebiotic effects of arabinoxylan oligosaccharides on juvenile Siberian sturgeon (Acipenser baerii) with emphasis on the modulation of the gut microbiota using 454 pyrosequencing. FEMS Microbiology Ecology, 86 (2). pp. 357-371.

Gan, Emily, Baird, Fiona, Coloe, Peter J., Smooker, Peter M, and UNSPECIFIED (2011) Phenotypic and molecular characterization of Salmonella enterica serovar Sofia, an avirulent species in Australian poultry. Microbiology, 157 (4). pp. 1056-1065.

H

Hehl, Adrian B., Basso, Walter U., Lippuner, Christoph, Ramakrishnan, Chandra , Okoniewski, Michal, Walker, Robert A., Grigg, Michael E., Smith, Nicholas C., and Deplazes, Peter (2015) Asexual expansion of Toxoplasma gondii merozoites is distinct from tachyzoites and entails expression of non-overlapping gene families to attach, invade, and replicate within feline enterocytes. BMC Genomics, 16. 66. pp. 1-16.

Hennebry, Sarah C., Sait, Leanne C., Mantena, Raju, Humphery, Thomas J., Yang, Ji, Scott, Timothy, Kupz, Andreas, Richardson, Samantha J., and Strugnell, Richard A. (2012) Salmonella typhimurium's transthyretin-like protein is a host-specific factor important in fecal survival in chickens. PLoS ONE, 7 (12). e46675. pp. 1-11.

I

Islam, M. Khyrul, Jabbar, Abdul, Campbell, Bronwyn E., Cantacessi, Cinzia, and Gasser, Robin (2011) Bovine theileriosis: an emerging problem in south-eastern Australia? Infection, Genetics and Evolution, 11 (8). pp. 2095-2097.

J

Jex, Aaron R., Smith, Huw V., Nolan, Matthew J., Campbell, Bronwyn E., Young , Neil D., Cantacessi, Cinzia, and Gasser, Robin B. (2011) Cryptic parasite revealed: improved prospects for treatment and control of human cryptosporidiosis through advanced technologies. In: Rollinson, D., and Hay, S.I., (eds.) Advances in Parasitology. Elsevier, pp. 141-173.

K

Kupz, Andreas, Bedoui, Sammy, and Strugnell, Richard A. (2014) Cellular requirements for systemic control of Salmonella enterica serovar Typhimurium infections in mice. Infection and Immunity, 82 (12). pp. 4997-5004.

Kupz, Andreas, Fischer, André, Nies, Dietrich H., Grass, Gregor, Göbel, Ulf B., Bereswill, Stefan, and Heimesaat, Markus M. (2013) Impact of metal ion homeostasis of genetically modified Escherichia coli Nissle 1917 and K12 (W3110) strains on colonization properties in the murine intestinal tract. European Journal of Microbiology and Immunology, 3 (3). pp. 229-235.

L

Lema, Anaïs Kimberley (2014) Diversity, stability, and uptake of diazotrophic bacterial communities associated with corals of the Great Barrier Reef. PhD thesis, James Cook University.

Lipkin, Walter Ian, and Firth, Cadhla (2013) Viral surveillance and discovery. Current Opinion in Virology, 3 (2). pp. 199-204.

Lourdault, Kristel, Cerqueira, Gustavo M., Wunder, Elsio A., and Picardeau, Mathieu (2011) Inactivation of clpB in the pathogen Leptospira interrogans reduces virulence and resistance to stress conditions. Infection and Immunity, 79 (9). pp. 3711-3717.

Laha, Thewarach, Pinlaor, Porntip, Mulvenna, Jason, Sripa, Banchob, Sripa, Manop, Smout, Michael J., Gasser, Robin B., Brindley, Paul J., and Loukas, Alex (2007) Gene discovery for the carcinogenic human liver fluke, Opisthorchis viverrini. BMC Genomics, 8. 189. pp. 1-15.

laha, Thewarch, Brindley, Paul J., Smout, Michael J., Verity, Christiana K., McManus, Donald P., and Loukas, Alex (2002) Reverse transcriptase activity and untranslated region sharing of a new RTE-like, non-long terminal repeat retrotransposon from the human blood fluke, Schistosoma japonicum. International Journal for Parasitology, 32 (9). pp. 1163-1174.

M

Morine, M., Yang, R., Ng, J., Kueh, S., Lymbery, A. J., and Ryan, U. M. (2012) Additional novel Cryptosporidium genotypes in ornamental fishes. Veterinary Parasitology, 190 (3-4). pp. 578-582.

McBride, Alan, Cerqueira, Gustavo, Suchard, Mark, Moreira, Angela, Zuerner, Richard, Reis, Mitermayer, Haake, David, Ko, Albert, and Dellagostin, Odir (2009) Genetic diversity of the Leptospiral immunoglobulin-like (Lig) genes in pathogenic Leptospira spp. Infection, Genetics and Evolution, 9. pp. 196-205.

P

Price, Erin P., Dale, Julia L., Cook, James M., Sarovich, Derek S., Seymour, Meagan L., Ginther, Jennifer L., Kaufman, Emily L., Beckstrom-Sternberg, Stephen M., Mayo, Mark, Kaestli, Mirjam, Glass, Mindy B., Gee, Jay E., Wuthiekanun, Vanaporn, Warner, Jeffrey M., Baker, Anthony, Foster, Jeffrey T., Tan, Patrick, Limmathurotsakul, Direk, Peacock, Sharon J., Tuanyok, Apichai, Currie, Bart J., Wagner, David M., Keim, Paul, and Pearson, Talima (2012) Development and validation of Burkholderia pseudomallei-Specific real-time PCR assays for clinical, environmental or forensic detection applications. PLoS One, 7 (5). e37723. pp. 1-9.

Peleg, Anton Y., de Breij, Anna, Adams, Mark D., Cerqueira, Gustavo M., Mocali, Stefano, Galardini, Marco, Nibbering, Peter H., Earl, Ashlee M., Ward, Doyle V., Paterson, David L., Seifert, Harald, and Dijkshoorn, Lenie (2012) The success of acinetobacter species; genetic, metabolic and virulence attributes. PLoS ONE, 7 (10). e46984. pp. 1-11.

Q

Quan, Phenix-Lan, Wagner, Thor A., Briese, Thomas, Torgerson, Troy R., Hornig, Mady, Tashmukhamedova, Alla, Firth, Cadhla, Palacios, Gustavo, Baisre-De-Leon, Ada, Paddock, Christopher D., Hutchison, Stephen K., Egholm, Michael, Zaki, Sherif R., Goldman, James E., Ochs, Hans D., and Lipkin, W. Ian (2010) Astrovirus Encephalitis in Boy with X-linked Agammaglobulinemia. Emerging Infectious Diseases, 16 (6). pp. 918-925.

R

Rosenblum, Erica Bree, James, Timothy Y., Zamudio, Kelly R., Poorten, Thomas J., Ilut, Dan, Rodriguez, David, Eastman, Jonathan M., Richards-Hrdlicka, Katy, Joneson, Suzanne, Jenkinson, Thomas S., Longcore, Joyce E., Parra Olea, Gabriela, Toledo, Lus Felipe, Luz Arellano, Maria, Medina, Edgar M., Restrepo, Silvia, Victoria Flechas, Sandra, Berger, Lee, Briggs, Cheryl J., and Stajich, Jason E. (2013) Complex history of the amphibian-killing chytrid fungus revealed with genome resequencing data. Proceedings of the National Academy of Sciences of the United States of America, 110 (23). pp. 9385-9390.

Roberts, Alexandra A., Schultz, Andrew W., Kersten, Roland D., Dorrestein, Pieter C., and Moore, Bradley S. (2012) Iron acquisition in the marine actinomycete genus Salinispora is controlled by the desferrioxamine family of siderophores. FEMS Microbiology Letters, 335 (2). pp. 95-103.

S

Shein, Karsten, Loder, Jennifer, Bourne, David G., and Galvis, Nohora (2016) Citizen Science: the next big leap. In: Proceedings of the 13th International Coral Reef Symposium. pp. 590-598. From: 13th International Coral Reef Symposium, 19-24 June 2016, Honolulu, HI, USA.

Sweet, Michael, Kirkham, Nigel, Bendall, Mark, Currey, Leanne, Bythell, John, and Heupel, Michelle (2012) Evidence of melanoma in wild marine fish populations. PLoS One, 7 (8). e41989. e41989.

Seixas, Fabiana K., Borsuk, Sibele, Fagundes, Michel Q., Hartwig, Daiane D., da Silva, Everton F., Cerqueira, Gustavo M., and Dellagostin, Odir A. (2010) Stable expression of Leptospira interrogans antigens in auxotrophic Mycobacterium bovis BCG. Biological Research, 43 (1). pp. 13-18.

Saleh, Suha M., Poidinger, Michael, Mackenzie, John S., Broom, Annette K., Lindsay, Michael D.A., Russell, Richard, Cloonan, Michael J., Calisher, Charles H., Burgess, Graham W., and Hall, Roy A. (2004) Antigenic and genetic typing of Whataroa viruses in Australia. American Journal of Tropical Medicine and Hygiene, 71 (3). pp. 262-267.

Schweizer, Anja (2003) Die Rolle des TEA/ATTS-Transkriptionsfaktors CaTEC1p bei der Hyphenbildung und Virulenz von Candida albicans. PhD thesis, Friedrich-Alexander-Universität Erlangen-Nürnberg.

Skerratt, L.F., Campbell, N.J.H., Murrell, A., Walton, S., Kemp, D., and Barker, S.C. (2002) The mitochondrial 12S gene is a suitable marker of populations of Sarcoptes scabiei from wombats, dogs and humans in Australia. Parasitology Research, 88 (4). pp. 376-379.

Schweizer, AS, Rupp, S, Taylor, BN, Roellinghoff, M, and UNSPECIFIED (2000) The TEA/ATTS transcription factor CaTEC1p regulates hyphal development and virulence in Candida albicans. Molecular microbiology, 38 (3). pp. 435-445.

T

Tokarz, Rafal, Firth, Cadhla, Madhi, Shabir A., Howie, Stephen R.C., Wu, Winfred, Sall, Amadou Alpha, Haq, Sadef, Briese, Thomas, and Lipkin, W. Ian (2012) Worldwide emergence of multiple clades of enterovirus 68. Journal of General Virology, 93 (9). pp. 1952-1958.

Taylor, BN, Harrer, T, Pscheidl, E, Schweizer, AS, Roellinghoff, M, and Schroeppel, K (2003) Surveillance of nosocomial transmission of Candida albicans in an intensive care unit by DNA fingerprinting. Journal of hospital infection, 55 (4). pp. 283-289.

W

Walker, Robert A., Sharman, Philippa A., Miller, Catherine M., Lippuner, Christoph, Okoniewski, Michal, Eichenberger, Ramon M., Ramakrishnan, Chandra, Brossier, Fabien, Deplazes, Peter, Hehl, Adrian B., and Smith, Nicholas C. (2015) RNA Seq analysis of the Eimeria tenella gametocyte transcriptome reveals clues about the molecular basis for sexual reproduction and oocyst biogenesis. BMC Genomics, 16. 94. pp. 1-20.

X

Xu, Suyun, Selvam, Ammaiyappan, Karthikeyan, Obuli. P., and Wong, Jonathan W.C. (2014) Responses of microbial community and acidogenic intermediates to different water regimes in a hybrid solid anaerobic digestion system treating food waste. Bioresource Technology, 168. pp. 49-58.