Article

Robinson, Nick A., Hall, Nathan E., Ross, Elizabeth M., Cooke, Ira R., Shiel, Brett P., Robinson, Andrew J., and Strugnell, Jan M. (2016) The complete mitochondrial genome of Haliotis laevigata (Gastropoda: Haliotidae) using MiSeq and HiSeq sequencing. Mitochondrial DNA Part A: DNA mapping, sequencing and analysis, 27. pp. 437-438.

Edmunds, Richard C., Su, Baofeng, Balhoff, James P., Eames, B. Frank, Dahdul, Wasila M., Lapp, Hilmar, Lundberg, John G., Vision, Todd J., Dunham, Rex A., Mabee, Paula M., and Westerfield, Monte (2015) Phenoscape: identifying candidate genes for evolutionary phenotypes. Molecular Biology and Evolution, 33 (1). pp. 13-24.

Bertucci, A., Forêt, S., Ball, E.E., and Miller, D.J. (2015) Transcriptomic differences between day and night in Acropora millepora provide new insights into metabolite exchange and light-enhanced calcification in corals. Molecular Ecology, 24 (17). pp. 4489-4504.

Zoccola, Didier, Ganot, Philippe, Bertucci, Anthony, Caminiti-Segonds, Natacha, Techer, Nathalie, Voolstra, Christian, Aranda, Manuel, Tambutté, Eric, Allemand, Denis, Casey, Joseph R., and Tambutté, Sylvie (2015) Bicarbonate transporters in corals point towards a key step in the evolution of cnidarian calcification. Scientific Reports, 5. 09983. pp. 1-11.

Beebe, Nigel W., Russell, Tanya, Burkot, Thomas R., and Cooper, Robert D. (2015) Anopheles punctulatus group: evolution, distribution, and control. Annual Review of Entomology, 60. pp. 335-350.

Walker, Peter J., Firth, Cadhla, Widen, Steven G., Blasdell, Kim R., Guzman, Hilda, Wood, Thomas G., Paradkar, Prasad N., Holmes, Edward C., Tesh, Robert B., and Vasilakis, Nikos (2015) Evolution of genome size and complexity in the Rhabdoviridae. PLoS Pathogens, 11 (2). e1004664.

Bromham, Lindell, Hua, Xia, Lanfear, Robert, and Cowman, Peter F. (2015) Exploring the relationships between mutation rates, life history, genome size, environment, and species richness in flowering plants. American Naturalist, 185 (4). pp. 507-524.

Hua, Xia, Cowman, Peter, Warren, Dan, and Bromham, Lindell (2015) Longevity is linked to mitochondrial mutation rates in rockfish: a test using poisson regression. Molecular Biology and Evolution, 32 (10). pp. 2633-2645.

Krueger, Thomas, Fisher, Paul L., Becker, Susanne, Pontasch, Stefanie, Dove, Sophie, Hoegh-Guldberg, Ove, Leggat, William, and Davy, Simon K. (2015) Transcriptomic characterization of the enzymatic antioxidants FeSOD, MnSOD, APX and KatG in the dinoflagellate genus Symbiodinium. BMC Evolutionary Biology, 15. 48. pp. 1-20.

Blasdell, Kim R., Widen, Steven G., Diviney, Sinéad M., Firth, Cadhla, Wood, Thomas G., Guzman, Hilda, Holmes, Edward C., Tesh, Robert B., Vasilakis, Nikos, and Walker, Peter J. (2014) Koolpinyah and Yata viruses: two newly recognised ephemeroviruses from tropical regions of Australia and Africa. Veterinary Microbiology, 174 (3-4). pp. 547-553.

Karako-Lampert, Sarit, Zoccola, Didier, Salmon-Divon, Mali, Katzenellenbogen, Mark, Tambutté, Sylvie, Bertucci, Anthony, Hoegh-Guldberg, Ove, Deleury, Emeline, Allemand, Denis, and Levy, Oren (2014) Transcriptome analysis of the scleractinian coral Stylophora pistillata. PLoS ONE, 9 (2). e88615. pp. 1-11.

Richards, Z.T., Miller, D.J., and Wallace, C.C. (2013) Molecular phylogenetics of geographically restricted Acropora species: implications for threatened species conservation. Molecular Phylogenetics and Evolution, 69 (3). pp. 837-851.

Miller, Terrence L., and Cribb, Thomas H. (2013) Dramatic phenotypic plasticity within species of Siphomutabilus n. g. (Digenea: Cryptogonimidae) from Indo-Pacific caesionines (Perciformes: Lutjanidae). Systematic Parasitology, 86 (2). pp. 101-112.

Rosenblum, Erica Bree, James, Timothy Y., Zamudio, Kelly R., Poorten, Thomas J., Ilut, Dan, Rodriguez, David, Eastman, Jonathan M., Richards-Hrdlicka, Katy, Joneson, Suzanne, Jenkinson, Thomas S., Longcore, Joyce E., Parra Olea, Gabriela, Toledo, Lus Felipe, Luz Arellano, Maria, Medina, Edgar M., Restrepo, Silvia, Victoria Flechas, Sandra, Berger, Lee, Briggs, Cheryl J., and Stajich, Jason E. (2013) Complex history of the amphibian-killing chytrid fungus revealed with genome resequencing data. Proceedings of the National Academy of Sciences of the United States of America, 110 (23). pp. 9385-9390.

Quan, Phenix-Lan, Firth, Cadhla, Conte, Juliette M., Williams, Simon H., Zambrana-Torrelio, Carlos M., Anthony, Simon J., Ellison, James A., Gilbert, Amy T., Kuzmin, Ivan V., Niezgoda, Michael, Osinubi, Modupe O.V., Recuenco, Sergio, Markotter, Wanda, Breiman, Robert F., Kalemba, Lems, Malekani, Jean, Lindblade, Kim A., Rostal, Melinda K., Ojeda-Flores, Rafael, Suzan, Gerardo, Davis, Lora B., Blau, Dianna M., Ogunkoya, Albert B., Alvarez Castillo, Danilo A., Moran, David, Ngam, Sali, Akaibe, Dudu, Agwanda, Bernard, Briese, Thomas, Epstein, Jonathan H., Daszak, Peter, Rupprecht, Charles E., Holmes, Edward C., and Lipkin, W. Ian (2013) Bats are a major natural reservoir for hepaciviruses and pegiviruses. Proceedings of the National Academy of Sciences of the United States of America, 110 (20). pp. 8194-8199.

Fang, Zhong, Roberts, Alexandra A., Weidman, Karissa, Sharma, Sunil V., Claiborne, Al, Hamilton, Christopher J., and Dos Santos, Patricia C. (2013) Cross functionalities of Bacillus deacetylases involved in bacillithiol biosynthesis and bacillithiol-S-conjugate detoxification pathways. Biochemical Journal, 454 (2). pp. 239-247.

Simo-Droissart, Murielle, Micheneau, Claire, Sonké, Bonaventure, Droissart, Vincent, Plunkett, Gregory M., Lowry, Porter P., Hardy, Olivier J., and Stévart, Tariq (2013) Morphometrics and molecular phylogenetics of the continental African species of Angraecum section Pectinaria (Orchidaceae). Plant Ecology and Evolution, 146 (3). pp. 295-309.

Bromham, Lindell, Cowman, Peter F., and Lanfear, Robert (2013) Parasitic plants have increased rates of molecular evolution across all three genomes. Molecular Cancer Therapeutics, 13 (126). pp. 1-11.

Hamada, Mayuko, Shoguchi, Eiichi, Shinzato, Chuya, Kawashima, Takeshi, Miller, David J., and Satoh, Nori (2013) The complex NOD-like receptor repertoire of the coral Acropora digitifera includes novel domain combinations. Molecular Biology and Evolution, 30 (1). pp. 167-176.

Yan, Hong-Bin, Wang, Xing-Ye, Lou, Zhong-Zi, Li, Li, Blair, David, Yin, Hong, Cai, Jin-Zhong, Dai, Xue-Ling, Lei, Meng-Tong, Zhu, Xing-Quan, Cai, Xue-Peng, and Jia, Wan-Zhong (2013) The mitochondrial genome of Paramphistomum cervi (Digenea), the first representative for the family Paramphistomidae. PLoS ONE, 8 (8). e71300. pp. 1-8.

Ramos-Silva, Paula, Kaandorp, Jaap, Huisman, Lotte, Marie, Benjamin, Zanella-Cléon, Isabelle, Guichard, Nathalie, Miller, David J., and Marin, Frédéric (2013) The skeletal proteome of the coral Acropora millepora: the evolution of calcification by co-option and domain shuffling. Molecular Biology and Evolution, 30 (9). pp. 2099-2112.

Mylne, Joshua S., Chan, Lai Yue, Chanson, Aurelie H., Daly, Norelle L., Schaefer, Hanno, Bailey, Timothy L., Nguyencong, Philip, Cascales, Laura, and Craik, David J. (2012) Cyclic peptides arising by evolutionary parallelism via asparaginyl-endopeptidase–mediated biosynthesis. Plant cell, 24 (7). pp. 2765-2778.

Zhang, A-B., Muster, C., Liang, H-B., Zhu, C-D., Crozier, R., Wan, P., Feng, J., and Ward, R.D. (2012) A fuzzy-set-theory-based approach to analyse species membership in DNA barcoding. Molecular Ecology, 21 (8). pp. 1848-1863.

Lukoschek, Vimoksalehi, Keogh, J. Scott, and Avise, John C. (2012) Evaluating fossil calibrations for dating phylogenies in light of rates of molecular evolution: a comparison of three approaches. Systematic Biology, 61 (1). pp. 22-43.

Kokubugata, Goro, Nakamura, Koh, Forster, Paul I., Wilson, Gary W., Holland, Ailsa E., Hirayama, Yumiko, and Yokota, Masatsugu (2012) Cassytha pubescens and C. glabella (Lauraceae) are not disjunctly distributed between Australia and the Ryukyu Archipelago of Japan: evidence from morphological and molecular data. Australian Systematic Botany, 25 (5). pp. 364-373.

Bellantuono, Anthony J., Granados-Cifuentes, Camila, Miller, David J., Hoegh-Guldberg, Ove, and Rodriguez-Lanetty, Mauricio (2012) Coral thermal tolerance: tuning gene expression to resist thermal stress. PLoS ONE, 7 (11). e50685. pp. 1-14.

Firth, Cadhla, Tokarz, Rafal, Simith, Darlene B., Nunes, Marcio R.T., Bhat, Meera, Rosa, Elizabeth S.T., Medeiros, Daniele B.A., Palacios, Gustavo, Vasconcelos, Pedro F.C., and Lipkin, W. Ian (2012) Diversity and Distribution of Hantaviruses in South America. Journal of Virology, 86 (24). pp. 13756-13766.

Boldt, Lynda, Yellowlees, David, and Leggat, William (2012) Hyperdiversity of genes encoding integral light-harvesting proteins in the dinoflagellate Symbiodinium sp. PLoS ONE, 7 (10). e47456. pp. 1-13.

Tokarz, Rafal, Firth, Cadhla, Madhi, Shabir A., Howie, Stephen R.C., Wu, Winfred, Sall, Amadou Alpha, Haq, Sadef, Briese, Thomas, and Lipkin, W. Ian (2012) Worldwide emergence of multiple clades of enterovirus 68. Journal of General Virology, 93 (9). pp. 1952-1958.

Attenborough, Rosalind M.F., Hayward, David C., V. Kitahara, Marcelo, Miller, David J., and Ball, Eldon E. (2012) A "neural" enzyme in nonbilaterian animals and algae: preneural origins for peptidylglycine α-amidating monooxygenase. Molecular Biology and Evolution, 29 (10). pp. 3095-3109.

Sun, Guiling, Yang, Zefeng, Kosch, Tiffany, Summers, Kyle, and Huang, Jinling (2011) Evidence for acquisition of virulence effectors in pathogenic chytrids. BMC Evolutionary Biology, 11. 195. pp. 1-9.

Iguchi, Akira, Shinzato, Chuya , Forêt, Sylvain, and Miller, David J. (2011) Identification of fast-evolving genes in the scleractinian Coral Acropora using comparative EST analysis. PLoS ONE, 6 (6). e20140. pp. 1-6.

Grasso, L.C., Negri, A.P., Fôret, S., Saint, R., Hayward, D.C., Miller, D.J., and Ball, E.E. (2011) The biology of coral metamorphosis: molecular responses of larvae to inducers of settlement and metamorphosis. Developmental Biology, 353 (2). pp. 411-419.

Lange, Christina, Hemmrich, Georg, Klostermeier, Ulrich C. , López-Quintero, Javier A. , Miller, David J., Rahn, Tasja, Weiss, Yvonne, Bosch, Thomas C.G., and Rosenstiel, Philip (2011) Defining the origins of the NOD-like receptor system at the base of animal evolution. Molecular Biology and Evolution, 28 (5). pp. 1687-1702.

Miller, David A., Choat, John Howard, Clements, Kendall D., and Angert, Esther R. (2011) The spoIIE homolog of Epulopiscium sp. type B is expressed early in intracellular offspring development. Journal of Bacteriology, 193 (10). pp. 2642-2646.

Levy, O., Kaniewska, P., Alon, S., Eisenberg, E., Karako-Lampert , S., Bay, L.K., Reef, R., Rodriguez-Lanetty , M., Miller, D.J., and Hoegh-Guldberg, O. (2011) Complex diel cycles of gene expression in coral-algal symbiosis. Science, 331 (6014). p. 175.

Forêt, Sylvain, Seneca, François, De Jong, Danielle, Bieller, Annette, Hemmrich, Georg, Augustin, Rene, Hayward, David C., Ball, Eldon E., Bosch, Thomas C.G., Agata, Kiyokazu, Hassel, Monika, and Miller, David J. (2011) Phylogenomics reveals an anomalous distribution of USP genes in metazoans. Molecular Biology and Evolution, 28 (1). pp. 153-161.

Kapoor, Amit, Simmonds, Peter, Gerold, Gisa, Qaisar, Natasha, Jain, Komal, Henriquez, Jose A., Firth, Cadhla, Hirschberg, David L., Rice, Charles M., Shields, Shelly, and Lipkin, W. Ian (2011) Characterization of a canine homolog of hepatitis C virus. Proceedings of the National Academy of Sciences of the United States of America, 108 (28). pp. 11608-11613.

Sanetra, M. (2011) Nestmate relatedness in the Australian ant myrmecia pyriformis smith, 1858 (Hymenoptera: Formicidae). Myrmecological News, 15. pp. 77-84.

Webster, Nicole S., Taylor, Michael W., Behnam, Faris, Lücker, Sebastian, Rattei, Thomas, Whalan, Stephen, Horn, Matthias, and Wagner, Michael (2010) Deep sequencing reveals exceptional diversity and modes of transmission for bacterial sponge symbionts. Environmental Microbiology, 12 (8). pp. 2070-2082.

Ball, Eldon E., and Miller, David J. (2010) Putting placozoans on the (phylogeographic) map. Molecular Ecology, 19 (11). pp. 2181-2183.

Hartmann, Beata, Müller, Michael, Hislop, Nikki R., Roth , Bettina, Tomljenovic, Lucija, Miller, David J., and Reichert, Heinrich (2010) Coral emx-Am can substitute for Drosophila empty spiracles function in head, but not brain development. Developmental Biology, 340 (1). pp. 125-133.

Forêt, Sylvain, Knack, Brent, Houliston, Evelyn, Momose, Tsuyoshi, Manuel, Michael, Quéinnec, Eric, Hayward, David C., Ball, Eldon E., and Miller, David J. (2010) New tricks with old genes: the genetic bases of novel cnidarian traits. Trends in Genetics, 26 (4). pp. 154-158.

You, Hong, Zhang, Wenbao, Jones, Malcolm K., Gobert, Geoffrey N. , Mulvenna, Jason, Rees, Glynn, Spanevello, Mark, Blair, David, Duke, Mary, Brehm, Klaus, and McManus, Donald P. (2010) Cloning and characterisation of Schistosoma japonicum insulin receptors. PLoS ONE, 5 (3). pp. 1-13.

Zhang, A.B., He, L.J., Crozier, R.H., Muster, C., and Zhu, C-D. (2010) Estimating sample sizes for DNA barcoding. Molecular Phylogenetics and Evolution, 54 (3). pp. 1035-1039.

Miller, David J., and Technau, Ulrich (2010) Understanding the evolution of multicellularity; insights from basal metazoans. BioEssays, 32 (2). pp. 175-178.

Quan, Phenix-Lan, Firth, Cadhla, Street, Craig, Henriquez, Jose A., Petrosov, Alexandra, Tashmukhamedova, Alla, Hutchison, Stephen K., Egholm, Michael, Osinubi, Modupe O.V., Niezgoda, Michael, Ogunkoya, Albert B., Briese, Thomas, Rupprecht, Charles E., and Lipkin, W. Ian (2010) Identification of a Severe Acute Respiratory Syndrome Coronavirus-Like Virus in a Leaf-Nosed Bat in Nigeria. mBio, 1 (4). e00208-e00210.

Pagán, Israel, Firth, Cadhla, and Holmes, Edward C. (2010) Phylogenetic Analysis Reveals Rapid Evolutionary Dynamics in the Plant RNA Virus Genus Tobamovirus. Journal of Molecular Evolution, 71. pp. 298-307.

Harrington, Mark G., Biffen, Ed, and Gadek, Paul A. (2009) Comparative study of the evolution of nuclear ribosomal spacers incorporating secondary structure analyzes within Dodonaeoideae, Hippocastanoideae and Xanthoceroideae (Sapindaceae). Molecular Phylogenetics and Evolution, 50 (2). pp. 364-375.

Pye, Matthew G., Henwood, Murray J., and Gadek, Paul A. (2009) Differential levels of genetic diversity and divergence among populations of an ancient Australian rainforest conifer, Araucaria cunninghamii. Plant Systematics and Evolution, 277 (3-4). pp. 173-185.

Edmunds, Richard C., van Herwerden, Lynne, Smith-Keune, Carolyn, and Jerry, Dean R. (2009) Comparative characterization of a temperature responsive gene (lactate dehydrogenase-B, ldh-b) in two congeneric tropical fish, Lates calcarifer and Lates niloticus. International Journal of Biological Sciences, 5 (6). pp. 558-569.

Edmunds, Richard C., van Herwerden, Lynne, Smith-Keune, Carolyn, and Jerry, Dean R. (2009) Comparative characterization of a temperature responsive gene (lactatedehydrogenase-B, ldh-b) in two congeneric tropical fish, Lates calcarifer and Lates niloticus. International Journal of Biological Sciences, 5 (6). pp. 558-569.

Reyes-Bermudez, Alejandro, Lin, Zhiyi, Hayward, David C., Miller, David J., and Ball, Eldon E. (2009) Differential expression of three galaxin-related genes during settlement and metamorphosis in the scleractinian coral Acropora millepora. BMC Evolutionary Biology, 9 (178). - .

Yin, Mingbo, Hu, Wei, Mo, Xiaojin, Wang, Shengyue, Brindley, Paul J., McManus, Donald P., Davis, George M., Feng, Zheng, and Blair, David (2008) Multiple near-identical genotypes of Schistosoma japonicum can occur in snails and have implications for population-genetic analyses. International Journal for Parasitology, 38 (14). pp. 1681-1691.

Miller, David J., and Ball, Eldon E. (2008) Animal evolution: Trichoplax, trees and taxonomic turmoil. Current Biology, 18 (21). pp. 1003-1005.

Maruyama, Munetoshi, Steiner, Florian M., Stauffer, Christian, Akino, Toshiharu, Crozier, Ross H., and Schlick-Steiner, Birgit C. (2008) A DNA and morphology based phylogenetic framework of the ant genus Lasius with hypotheses for the evolution of social parasitism and fungiculture. BMC Evolutionary Biology, 8. .

Arthofer, Wolfgang, Schlick-Steiner, Birgit C., Steiner, Florian M., Avtzis, Dimitrios N., Crozier, Ross H., and Stauffer, Christian (2007) Lessons from a beetle and an ant: coping with taxon-dependent differences in microsatellite development success. Journal of Molecular Evolution, 65 (3). pp. 304-307.

Biffin, E., Harrington, M.G., Crisp, M.D., Craven, L.A., and Gadek, P.A. (2007) Structural partitioning, paired-sites models and evolution of the ITS transcript in Syzygium and Myrtaceae. Molecular Phylogenetics and Evolution, 43 (1). pp. 124-139.

Rowley, Jodi J.L., and Alford, Ross A. (2007) Techniques for tracking amphibians: the effects of tag attachment, and harmonic direction finding versus radio telemetry. Amphibia-Reptilia, 28 (3). pp. 367-376.

Biffin, Ed, Craven, Lyn A., Crisp, Michael .D., and Gadek, Paul A. (2006) Molecular systematics of Syzygium and allied genera (Myrtaceae): evidence from the chloroplast genome. Taxon, 55 (1). pp. 79-94.

Kamm, Kai, Schierwater, Bernd, Jakob, Wolfgang, Dellaporta, Stephen L., and Miller, David J. (2006) Axial patterning and diversification in the Cnidaria predate the Hox System. Current Biology, 16 (9). pp. 920-926.

Ball, Eldon E., and Miller, David J. (2006) Phylogeny: the continuing classificatory conundrum of Chaetognaths. Current Biology, 16 (15). pp. 593-596.

Guzik, Michelle T., Norman, Mark D., and Crozier, Ross H. (2005) Molecular phylogeny of the benthic shallow-water octopuses (Cephalopoda: Octopodinae). Molecular Phylogenetics and Evolution, 37 (1). pp. 235-248.

Beckenbach, Andrew T., Robson, Simon K.A., and Crozier, Ross H. (2005) Single nucleotide +1 frameshifts in an apparently functional mitochondrial cytochrome b gene in ants of the genus Polyrhachis. Journal of Molecular Evolution, 60 (2). pp. 141-152.

Le, Thanh Hoa, McManus, Donald Peter, and Blair, David (2004) Codon usage and bias in mitochondrial genomes of parasitic platyhelminthes. Korean Journal of Parasitology, 42 (4). pp. 159-167.

Bulmer, Mark S., and Crozier, Ross H. (2004) Duplication and diversifying selection among termite antifungal peptides. Molecular Biology and Evolution, 21 (12). pp. 2256-2264.

Munday, Philip L., van Herwerden, Lynne, and Dudgeon, Christine L. (2004) Evidence for sympatric speciation by host shift in the sea. Current Biology, 14 (16). pp. 1498-1504.

Henshaw, Michael T., and Crozier, Ross H. (2004) Mating system and population structure of the primitively eusocial wasp Ropalidia revolutionalis: a model system for the evolution of complex societies. Molecular Ecology, 13 (7). pp. 1943-1950.

Klanten, Selma O., van Herwerden, Lynne, Choat, J.Howard, and Blair, David (2004) Patterns of lineage diversification in the Genus Naso (Acanthuridae). Molecular Phylogenetics and Evolution, 32 (1). pp. 221-235.

Hayward, David C., Miller, David J., and Ball, Eldon E. (2004) Snail expression during embryonic development of the coral Acropora: blurring the diploblast/triplobalst divide. Development Genes and Evolution, 214 (5). pp. 257-260.

van Oppen, Madeleine J.H. (2004) Mode of zooxanthella transmission does not affect zooxanthella diversity in acroporid corals. Marine Biology, 144 (1). pp. 1-7.

van Oppen, MJ.H., Koolmees, E.M., and Veron, J.E.N. (2004) Patterns of evolution in the scleractinian coral genus Montipora (Acroporidae). Marine Biology, 144 (1). pp. 9-18.

Kortschak, R. Daniel, Samuel, Gabrielle, Saint, Robert, and Miller, David J. (2003) EST analysis of the cnidarian Acropora millepora reveals extensive gene loss and rapid sequence divergence in the model invertebrates. Current Biology, 13 (24). pp. 2190-2195.

Marquez, Luis M., Miller, David J., Mackenzie, Jason B., and van Oppen, Madeleine J.H. (2003) Pseudogenes contribute to the extreme diversity of nuclear ribosomal DNA in the hard coral Acropora. Molecular Biology and Evolution, 20 (7). pp. 1077-1086.

Shearer, T.L., Van Oppen, M.J.H., Romano, S.L., and Wörheide, G. (2002) Slow mitochondrial DNA sequence evolution in the Anthozoa (Cnidaria). Molecular Ecology, 11 (12). pp. 2475-2487.

laha, Thewarch, Brindley, Paul J., Smout, Michael J., Verity, Christiana K., McManus, Donald P., and Loukas, Alex (2002) Reverse transcriptase activity and untranslated region sharing of a new RTE-like, non-long terminal repeat retrotransposon from the human blood fluke, Schistosoma japonicum. International Journal for Parasitology, 32 (9). pp. 1163-1174.

Chen, Chaolum Allen, Wallace, Carden C., and Wolstenholme, Jackie (2002) Analysis of the mitochondrial 12S rRNA gene supports a two-clade hypothesis of the evolutionary history of scleractinian corals. Molecular Phylogenetics and Evolution, 23 (2). pp. 137-149.

Marquez, L.M., van Oppen, M.J.H., Willis, B.L., and Miller, D.J. (2002) Sympatric populations of the highly cross-fertile coral species Acropora hyacinthus and Acropora cytherea are genetically distinct. Proceedings of the Royal Society of London Series B, Biological Sciences, 269 (1497). pp. 1289-1294.

Hayward, David C., Catmull, Julian, Reece-Hoyes, John S., Berghammer, Heinrich, Dodd, Heather, Hann, Steven J., Miller, David J., and Ball, Eldon E. (2001) Gene structure and larval expression of cnox-2Am from the coral Acropora millepora. Development Genes and Evolution, 211 (1). pp. 10-19.

Blair, D. (2000) Genomes of Paragonimus westermani and related species: current state of knowledge. International Journal for Parasitology, 30 (4). pp. 421-426.

Book Chapter

Ball, Eldon E., de Jong, Danielle M., Schierwater, Bernd, Shinzato, Chuya, Hayward, David C., and Miller, David J. (2011) Cnidarian gene expression patterns and the origins of bilaterality – are cnidarians reading the same game plan as "higher" animals? In: DeSalle, Rob, and Schierwater, Bernd, (eds.) Key Transitions in Animal Evolution. Science Publishers, Enfield, NH, USA, pp. 197-216.

Conference Item

Wei, Nu-Wei V., Wallace, Carden C., Lin, Ho-I, Wolstenholme, Jackie, Dai, Chang-Feng, and Chen, Chaolun A. (2004) Evaluation of molecular makers for species phylogeny of genus Acropora (Cnidaria; Scleractinia; Acroporidae). In: 10th International Coral Reef Symposium. p. 141. From: 10th International Coral Reef Symposium Abstracts: stability and degradation of coral reef ecosystems, 28 June - 2 July 2004, Okinawa, Japan. (Unpublished)

Ball, E.E, Hayward, D.C., Catmull, J., Reece-Hoyes, J.S., Hislop, N.R., Harrison, P.L., and Miller, D.J. (2002) Molecular control of development in the reef coral, Acropora millepora. In: Proceedings of the 9th International Coral Reef Symposium (1) pp. 395-401. From: 9th International Coral Reef Symposium: World Coral Reefs in the New Millenium, 23-27 October 2000, Bali, Indonesia.

Marquez, L.M., Mackenzie, J.B., Takabayashi, M., Smith, C.R., and Chen, C.A. (2000) Difficulties in obtaining microsatellites from acroporid corals. In: Proceedings of the 9th International Coral Reef Symposium (1) pp. 139-143. From: 9th International Coral Reef Symposium: World Coral Reefs in the New Millenium, 23-27 October 2000, Bali, Indonesia.

van Oppen, M.J.H., Wörheide, G., and Takabayashi, M. (2000) Nuclear markers in evolutionary and population genetic studies of scleractinian corals and sponges. In: Proceedings of the 9th International Coral Reef Symposium (1) pp. 131-138. From: 9th International Coral Reef Symposium: World Coral Reefs in the New Millenium, 23-27 October 2000, Bali, Indonesia.

Thesis

Grant, Lauryne Joan (2016) Biodiversity, biogeography and phylogeny of Australian freshwater triclads. PhD thesis, James Cook University.

Knack, Brent Andrew (2011) Cell adhesion factors in cnidarians. PhD thesis, James Cook University.

Seneca, François (2010) The molecular stress response in the Indo-Pacific model scleractinian coral, Acropora millepora. PhD thesis, James Cook University.

Avila Soria, Griselda (2009) Molecular characterization of Carukia barnesi and Malo kingi, Cnidaria; Cubozoa; Carybdeidae. PhD thesis, James Cook University.

Lukoschek, Vimoksalehi (2007) Molecular ecology, evolution and conservation of hydrophiine sea snakes. PhD thesis, James Cook University.

Shuetrim, Angela Jenny (2007) Molecular evolution of the immune related gene transferrin in Polyrhachis ants and distantly related insect taxa. PhD thesis, James Cook University.

Koetz, Anna Helene (2007) The causes and evolutionary consequences of behavioural, morphological and molecular genetic variation in the Chowchilla, Orthonyx spaldingii. PhD thesis, James Cook University.

Iguchi, Akira (2007) The molecular basis of fertilisation in coral Acropora and its role in speciation. PhD thesis, James Cook University.

Kassahn, Karin Sonja (2006) A microarray approach to understanding stress in a coral reef fish. PhD thesis, James Cook University.

Keall, Rebecca M. (2005) Molecular and genetic analysis of Drosophila Rad21: a gene and protein involved in sister chromatid cohesion. PhD thesis, James Cook University.

McDonald, Brenda J. (2005) Population genetics of dugongs around Australia : implications of gene flow and migration. PhD thesis, James Cook University.

Klanten, Selma O. (2003) Molecular phylogeny, temporal patterns of lineage diversification and phylogeography of the surgeonfish genus Naso (Acanthuridae). PhD thesis, James Cook University.

Márquez, Luis Miguel (2002) Interspecific hybridization in Acropora (Cnidaria: Scleractinia): mechanisms and evolutionary consequences. PhD thesis, James Cook University.