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Duke, Norman C., Bell, Alicia M., Pedersen, Dan K., Roelfsema, Chris M., and Bengston Nash, Susan (2005) Herbicides implicated as the cause of severe mangrove dieback in the Mackay region, NE Australia: consequences for marine plant habitats of the GBR World Heritage Area. Marine Pollution Bulletin, 51 (1-4). pp. 308-324.

Fidelman, Pedro (2005) A contribution to the mitigation of impacts from the Aquatic Macrophyte Eichhornia crassipes on the Coastal Zone of Southern Bahia, Brazil. Journal of Integrated Coastal Zone Management, 4 (3). pp. 1-5.

Su, Ninghu, Yu, Zu-Guo, Anh, Vo, and Bajracharya, Kiran (2004) Fractal tidal waves in coastal aquifers induced both anthropogenically and naturally. Environmental Modelling & Software, 19 (12). pp. 1125-1130.

Wolanski, E., Boorman, L. A., Chicharo, L., Langlois-Saliou, E., Lara, R., Plater, A.J., Uncles, R.J., and Zalewski, M. (2004) Ecohydrology as a new tool for sustainable management of estuaries and coastal waters. Wetlands Ecology and Management, 12 (4). pp. 234-276.

Gereta, Emmanuel, Mwangomo, Ephraim, and Wolanski, Eric (2004) The influence of wetlands in regulating water quality in the Seronera River, Serengeti National Park, Tanzania. Wetlands Ecology and Management, 12 (4). pp. 301-307.

Gereta, Emmanuel, Meing'ataki, Godwell Elias Ole, Mduma, Simon, and Wolanski, Eric (2004) The role of wetlands in wildlife migration in the Tarangire ecosystem, Tanzania. Wetlands Ecology and Management, 12 (4). pp. 285-299.

Rockloff, Susan F., and Lockie, Stewart (2004) Participatory tools for coastal zone management: use of stakeholder analysis and social mapping in Australia. Journal of Coastal Conservation, 10 (1). pp. 81-92.

Su, Ninghu, Liu, Fawang, and Anh, Vo (2003) Tides as phase-modulated waves inducing periodic groundwater flow in coastal aquifers overlaying a sloping impervious base. Environmental Modelling & Software, 18 (10). pp. 937-942.

van Herwerden, L., Griffiths, C.L., Bally, R., Blaine, M., and du Plessis, C. (1989) Patterns of shore utilization in a metropolitan area: the Cape Peninsula, South Africa. Ocean & Shoreline Management, 12 (4). pp. 331-346.

van Herwerden, L., and Bally, R. (1989) Shoreline utilisation in a rapidly growing coastal metropolitan area: the Cape Peninsula, South Africa. Ocean & Shoreline Management, 12 (2). pp. 169-178.

Book Chapter

Wolanski, Eric, Brinson, Mark M., Cahoon, Donald R., and Perillo, Gerardo M.E. (2009) Coastal Wetlands: a synthesis. In: Perillo, Gerardo M.E., Wolanski, Eric, Cahoon, Donald R., and Brinson, Mark M., (eds.) Coastal Wetlands: an integrated ecosystem approach. Elsevier, Amsterdam, The Netherlands, pp. 1-62.

Wolanski, Eric, and Richmond, Robert (2008) Estuary Restoration. In: Jorgensen, Sven Erik, and Fath, Brian D., (eds.) Encyclopedia of Ecology. Elsevier, Oxford, UK, pp. 1422-1427.

Wolanski, E., Newton, A., Rabalais, N., and Legrand, C. (2008) Coastal zone management. In: Jorgensen, Sven Erik, and Fath, Brian D., (eds.) Encyclopedia of Ecology. Elsevier, Oxford, pp. 630-637.

Wolanski, E., Chicharo, L., and Chicharo, M.A. (2008) Estuarine ecohydrology. In: Jorgensen, Sven Erik, and Fath, Brian D., (eds.) Encyclopedia of Ecology. Elsevier, Oxford, pp. 1413-1422.

Syms, C. (2008) Ordination. In: Jorgensen, Sven Erik, and Fath, Brian D., (eds.) Encyclopedia of Ecology. Elsevier, Oxford, pp. 2572-2581.

Syms, C. (2008) Principal components analysis. In: Jorgensen, Sven Erik, and Fath, Brian D., (eds.) Encyclopedia of Ecology. Elsevier, Oxford, pp. 2940-2949.

Chin, Andrew, and Marshall, Paul (2003) Reactive monitoring at Nelly Bay Harbour: using environmental monitoring to manage marine construction activities. In: Wilkinson, Clive, Green, Alison, Almany, Jeanine, and Dionne, Shannon, (eds.) Monitoring Coral Reef Protected Areas. Australian Institute of Marine Science, Townsville, QLD, Australia, pp. 34-35.

Lockie, Stewart, and Jennings, Susan (2003) The social impacts of natural resource use and condition: the invisible dimension of coastal resource management. In: Pritchard, Bill, Curtis, Allan, Spriggs, John, and Le Heron, Richard, (eds.) Social Dimensions of the Triple Bottom Line in Rural Australia. Department of Agriculture, Fisheries and Forestry, Canberra, ACT, Australia, pp. 131-143.

Report

Gooch, M., Dale, A., Marshall, N., and Vella, K. (2018) Assessing the human dimensions of the Great Barrier Reef: A Burnett-Mary Region focus. Report. Reef and Rainforest Research Centre Limited, Cairns, QLD, Australia.

Gooch, M., Dale, A., Marshall, N., and Vella, K. (2018) Assessing the human dimensions of the Great Barrier Reef: A Mackay-Whitsunday Region focus. Report. Reef and Rainforest Research Centre Limited, Cairns, QLD, Australia.

Gooch, M., Dale, A., Marshall, N., and Vella, K. (2018) Assessing the human dimensions of the Great Barrier Reef: A Wet Tropics Region focus. Report. Reef and Rainforest Research Centre Limited, Cairns, QLD, Australia.

Gooch, M., Dale, A., Marshall, N., and Vella, K. (2018) Assessing the human dimensions of the Great Barrier Reef: An Eastern Cape York Region focus. Report. Reef and Rainforest Research Centre Limited, Cairns, QLD, Australia.

Waterhouse, Jane, Schaffelke, Britta, Bartley, Rebecca, Eberhard, Rachel, Brodie, Jon, Star, Megan, Thorburn, Peter, Rolfe, John, Ronan, Mike, Taylor, Bruce, and Kroon, Frederieke (2017) 2017 Scientific Consensus Statement: land use impacts on the Great Barrier Reef water quality and ecosystem condition, Chapter 5: overview of key findings, management implications and knowledge gaps. Report Section. State of Queensland.

Dale, Allan, Vella, Karen, Pressey, Robert L., Brodie, Jon, Gooch, Margaret, Potts, Ruth, and Eberhard, Rachel (2016) Monitoring and adaptively reducing system-wide governance risks facing the GBR: final report. Report. Reef and Rainforest Research Centre, Cairns, QLD, Australia.

Barber, Marcus, Dale, Allan, Pearse, Rebecca, Everson, Bronte, Perry, Justin, Jaffer, Tim, Winer, Michael, and Creek, Dion (2016) Scoping market-based opportunities for Indigenous provision of water quality services and associated conservation governance in the Northern Great Barrier Reef: interim report. Report. Reef and Rainforest Research Centre Limited, Cairns, QLD, Australia.

Waltham, Nathan, McKenna, Skye, York, Paul, Devlin, Michelle, Campbell, Sean, Rasheed, Michael, Da Silva, Eduardo, Petus, Caroline, and Ridd, Peter (2015) Port of Mackay and Hay Point Ambient Marine Water Quality Monitoring Program (July 2014 to July 2015). Report. TropWATER, James Cook University, Townsville, QLD, Australia.

Greiner, Romy (2015) Ex-post evaluation of an environmental auction: legacy of the 2008 Lower Burdekin Water Quality Tender. Report. Reef and Rainforest Research Centre, Cairns, QLD, Australia.

Dichmont, Catherine M., Dutra, Leo X.C., van Putten, Ingrid, Deng, Roy, Owens, Randall, Jebreen, Eddie, Thompson, Carolyn, Pascual, Richardo, Warne, Michael, Quinn, Ross, Thébaud, Olivier, Bennett, John, Read, Mark, Wachenfeld, David, Davies, Julia, Garland, Anna, Dunning, Malcolm, Waycott, Michelle, Collier, Catherine, Dambacher, Jeffrey M., Playford, Julia, Harm, Rachel, Gribble, Neil, and Pitcher, Roland (2014) Design and implementation of management strategy evaluation for the Great Barrier Reef inshore (MSE-GBR). Report. Reef and Rainforest Research Centre, Cairns, Australia.

Johnson, Johanna, Maynard, Jeffrey, Devlin, Michelle, Wilkinson, Scott, Anthony, Ken, Yorkston, Hugh, Heron, Scott, Puotinen, Marji, and Van Hooidonk, Ruben (2013) 2013 scientific consensus statement: resilience of Great Barrier Reef marine ecosystems and drivers of change. Report. CSIRO Publishing, Queensland, Australia.

Devlin, Michelle, Petus, Caroline, da Silva, Eduardo Teixera, Alvarez-Romero, Jorge, Zeh, Daniel, Waterhouse, Jane, and Brodie, Jon (2013) Mapping of exposure to flood plumes, water types and exposure to pollutants (DIN, TSS) in the Great Barrier Reef: toward the production of operational risk maps for the world's most iconic marine ecosystem. Report Section. James Cook University, Townsville, QLD.

Devlin, Michelle, Wenger, Amelia, Waterhouse, Jane, Alvarez-Romero, Jorge, Abbott, Brett, and da Silva, Eduardo Teixeira (2012) Reef Rescue Marine Monitoring Program: flood plume monitoring annual report 2010-11: incorporating results from the Extreme Weather Response Program flood plume monitoring. Report. James Cook University, Townsville, QLD, Australia.

Devlin, Michelle, Wenger, Amelia, Petus, Caroline, da Silva, Eduardo Teixeira, Debose, Jennifer, and Álvarez-Romero, Jorge (2012) Reef Rescue Monitoring Program: final report of JCU activities 2011/12: flood plumes and extreme weather monitoring for the Great Barrier Reef Marine Park Authority. Report. James Cook University, Townsville, QLD, Australia.

Kool, Johnathan, Brewer, Tom, Mills, Morena, and Pressey, Robert (2010) Ridges to Reefs Conservation for Solomon Islands. Report. ARC Centre of Excellence for Coral Reef Studies, Townsville, QLD, Australia.

Grech, Alana, and Marsh, Helene (2010) Condition, Trends and Predicted Futures of Dugong Populations in the Great Barrier Reef World Heritage Area: Including an Evaluation of the Potential and Cost-Effectiveness of Indicators of the Status of These Populations. Report. Reef and Rainforest Research Centre, Cairns, QLD, Australia.

Mitchell, Alan, Brodie, Jon, and Furnas, Miles (2010) Report on AIMS river nutrient data collected from downstream sites in major Queensland rivers draining to the Great Barrier Reef lagoon, 1987-2000. Report. James Cook University, Townsville, QLD, Australia. (Unpublished)

Brodie, Jon, Pearson, Richard, Lewis, Stephen, Bainbridge, Zoe, Waterhouse, Jane, and Prange, Joelle (2009) Water quality research: baseline synthesis and year 1 summary. Report. Reef and Rainforest Research Centre on behalf of the Australian Government's Marine and Tropical Sciences Research Facility, Cairns, Australia.

Grech, Alana, Marsh, Helene, and Hamann, Mark (2009) Providing a Knowledge Base for Implementing the National Partnership Approach to Marine Turtle and Dugong Management in the Gulf of Carpentaria by Integrating Traditional Knowledge and Western Science. Report. UNSPECIFIED.

Grech, Alana, Coles, Robert, McKenzie, Len, and Rasheed, Michael (2008) Spatial Risk Assessment for Coastal Seagrass Habitats in the Great Barrier Reef World Heritage Area: a case study of the dry and wet tropics. Report. Reef and Rainforest Research Centre, Cairns, QLD.

Brodie, Jon, and Bainbridge, Zoe (2008) Water Quality Targets for the Burdekin Water Quality Improvement Plan. ACTFR Report No. 08/05 for the Burdekin Dry Tropics NRM. Report. James Cook University, Townsville, QLD, Australia.

Conference Item

Templeman, Shelley, Mercurio, Phillip, and Negri, Andrew (2017) Effects of herbicide degradation products on growth and photosynthetic efficiency in a benthic jellyfish. In: [Presented at the 2017 SETAC Australasia Conference]. From: 2017 SETAC Australasia Conference, 3-6 September 2017, Gold Coast, QLD, Australia.

Robson, Barbara J., Baird, Mark, and Wild-allen, Karen (2013) A physiological model for the marine cyanobacteria, Trichodesmium. In: Proceedings of the 20th International Congress on Modelling and Simulation. pp. 1652-1658. From: MODSIM 2013: 20th International Congress on Modelling and Simulation, 1-6 December 2013, Adelaide, SA, Australia.

Sreekanth, Janardhanan (2010) Monitoring feed-back based multi-objective management of saltwater intrusion in coastal aquifers using linked simulation-optimization. In: Engineers Australia Water Panel Presentations. From: Water Panel meeting, 21 April 2010, Brisbane, QLD, Australia.

Sreekanth, Janardhanan, and Datta, Bithin (2010) Multi-objective management models for optimal and sustainable use of coastal aquifers. In: Papers from Groundwater 2010. pp. 1-5. From: Groundwater 2010, 31 October - 4 November 2010, Canberra, ACT, Australia.

Darwen, Paul J. (2010) The long tail in Bayesian optimal control in uncertain environments. In: Proceedings of 2010 Second World Congress on Nature and Biologically Inspired Computing. pp. 579-586. From: 2010 Second World Congress on Nature and Biologically Inspired Computing, 15-17 December 2010, Fukuoka, Japan.

Bainbridge, Z.T., Brodie, J.E., Lewis, S.E., Waterhouse, J., and Wilkinson, S.N. (2009) Utilising catchment modelling as a tool for monitoring Reef Rescue outcomes in the Great Barrier Reef catchment area. In: Proceedings of 18th World IMACS Congress and MODSIM09 International Congress on Modelling and Simulation. pp. 3301-3307. From: 18th World IMACS Congress and MODSIM09 International Congress on Modelling and Simulation, 13–17 July 2009, Cairns, QLD, Australia.

Book

Eagle, Lynne, Hay, Rachel, and Schneider, Lysann (2020) Special issue on Changing estuaries, coasts and shelf systems - diverse threats and opportunities. Ocean & Coastal Management, 198 . Elsevier.

Perillo, Gerardo M.E., Wolanski, Eric, Cahoon, Donald R., and Brinson, Mark M. (2009) Coastal Wetlands: an integrated ecosystem approach. Elsevier, Amsterdam, the Netherlands.

Wolanski, Eric (2006) The Environment in Asia Pacific Harbours. Springer, Dordrecht, The Netherlands.

Thesis

Lal, Alvin Abinesh (2019) Development of sustainable groundwater management methodologies to control saltwater intrusion into coastal aquifers with application to a tropical Pacific island country. PhD thesis, James Cook University.

Rocker, Melissa M. (2016) Effects of water quality on the health and condition of inshore corals. PhD thesis, James Cook University.

Stark, Clair (2016) Spatial and temporal water quality changes during a large scale dredging operation. PhD thesis, James Cook University.

Bainbridge, Zoe T. (2015) Tracing the sources, transport and dispersal of suspended sediment from the Burdekin River catchment into the Great Barrier Reef lagoon. PhD thesis, James Cook University.

Macdonald, Rachael K. (2015) Turbidity and light attenuation in coastal waters of the Great Barrier Reef. PhD thesis, James Cook University.

Rockett, Nicholas (2015) Using high temporal resolution δD, δ¹⁸O to determine groundwater and surface water interactions in tropical catchments. Masters (Research) thesis, James Cook University.

Adkins, Merritt Elizabeth (2014) Large bodied fish communities and drivers of use in the shallow waters of a coastal habitat mosaic. Masters (Research) thesis, James Cook University.

Álvarez Romero, Jorge G. (2012) Advancing land-sea conservation planning: cross-system threats and competing values. PhD thesis, James Cook University.

Janardhanan, Sreekanth (2012) Integrated multi-objective management of saltwater intrusion in coastal aquifers using coupled simulation-optimisation and monitoring feedback information. PhD thesis, James Cook University.

Templeman, Michelle Anne (2012) Investigating the potential of jellyfishes as marine biomonitors and bioindicators of metal pollution. PhD thesis, James Cook University.

Andutta, Fernando Pinheiro (2012) Water dynamics and transport timescales of coastal waters and estuaries. PhD thesis, James Cook University.

Vermeiren, Peter Elisa Juliaan (2012) A landscape level understanding of habitat associations to integrate intertidal crabs into ecosystem models of tropical estuaries. PhD thesis, James Cook University.

Choukroun, Séverine (2010) The surface circulation of the Coral Sea and Great Barrier Reef. PhD thesis, James Cook University.

Renagi, Ora (2009) Dispersal patterns and quantities of sediment discharged from the Markham River, Papua New Guinea. PhD thesis, James Cook University.

Grech, Alana (2009) Spatial models and risk assessments to inform marine planning at ecosystem-scales: seagrasses and dugongs as a case study. PhD thesis, James Cook University.

Brinkman, Richard Michael (2006) Wave attenuation in mangrove forests: an investigation through field and theoretical studies. PhD thesis, James Cook University.

Other

Barbier, Edward B., Koch, Eva-Maria W., Silliman, Brian R., Hacker, Sally D., Wolanski, Eric, Primavera, Jurgenne H., Granek, Elise F., Polasky, Stephen, Aswani, Shankar, Cramer, Lori A., Stoms, David M., Kennedy, Chris J., Bael, David, Kappel, Carrie V., Perillo, Gerardo M.E., and Reed, Denise J. (2008) Vegetation's role in coastal protection: response. American Association for the Advancement of Science.