Article

Zenger, Kyall R., Khatkar, Mehar S., Jones, David B., Khalilisamani, Nima, Jerry, Dean R., and Raadsma, Herman W. (2019) Genomic selection in aquaculture: application, limitations and opportunities with special reference to marine shrimp and pearl oysters. Frontiers in Genetics, 9. 693.

Nowland, Samantha J., Silva, Catarina N.S., Southgate, Paul C., and Strugnell, Jan M. (2019) Mitochondrial and nuclear genetic analyses of the tropical black-lip rock oyster (Saccostrea echinata) reveals population subdivision and informs sustainable aquaculture development. BMC Genomics, 20. 711.

Lal, Monal M., Southgate, Paul C., Jerry, Dean R., Bosserelle, Cyprien, and Zenger, Kyall R. (2017) Swept away: ocean currents and seascape features influence genetic structure across the 18,000 Km Indo-Pacific distribution of a marine invertebrate, the black-lip pearl oyster Pinctada margaritifera. BMC Genomics, 18. 66. pp. 1-21.

Kishore, Pranesh, and Southgate, Paul C. (2016) A detailed description of pearl-sac development in the black-lip pearl oyster, Pinctada margaritifera (Linnaeus 1758). Aquaculture Research, 47 (7). pp. 2215-2226.

Lal, Monal M., Southgate, Paul C., Jerry, Dean R., and Zenger, Kyall R. (2016) Fishing for divergence in a sea of connectivity: the utility of ddRADseq genotyping in a marine invertebrate, the black-lip pearl oyster Pinctada margaritifera. Marine Genomics, 25. pp. 57-68.

Kishore, Pranesh, and Southgate, Paul C. (2016) The effect of different culture methods on the quality of round pearls produced by the black-lip pearl oyster Pinctada margaritifera (Linnaeus, 1758). Aquaculture, 451. pp. 65-71.

Nayfa, Maria G., and Zenger, Kyall R. (2016) Unravelling the effects of gene flow and selection in highly connected populations of the silver-lip pearl oyster (Pinctada maxima). Marine Genomics, 28. pp. 99-106.

Wassnig, Matthew, and Southgate, Paul C. (2016) The effects of stocking density and ration on survival and growth of winged pearl oyster (Pteria penguin) larvae fed commercially available micro-algae concentrates. Aquaculture Reports, 4. pp. 17-21.

Lal, Monal M., Southgate, Paul C., Jerry, Dean R., Bosserelle, Cyprien, and Zenger, Kyall R. (2016) A parallel population genomic and hydrodynamic approach to fishery management of highly-dispersive marine invertebrates: the case of the Fijian Black-Lip Pearl Oyster Pinctada margaritifera. PLoS One, 11 (8). e0161390. pp. 1-26.

Kishore, Pranesh, and Southgate, Paul C. (2015) Does the quality of cultured pearls from the black-lip pearl oyster, Pinctada margaritifera, improve after the second graft? Aquaculture, 446. pp. 97-102.

Kishore, Pranesh, and Southgate, Paul C. (2015) Development and function of pearl-sacs grown from regenerated mantle graft tissue in the black-lip pearl oyster, Pinctada margaritifera (Linnaeus, 1758). Fish and Shellfish Immunology, 45 (2). pp. 567-573.

Owens, Leigh, and Malham, Shelagh (2015) Review of the RNA interference pathway in molluscs including some possibilities for use in bivalves in aquaculture. Journal of Marine Science and Engineering, 3 (1). pp. 87-99.

Kishore, Pranesh, Southgate, Paul, Seeto, Johnson, and Hunter, Justin (2015) Factors influencing the quality of half-pearls (mabe) produced by the winged pearl oyster, Pteria penguin (Röding, 1758). Aquaculture Research, 46 (4). pp. 769-776.

Kishore, Pranesh, and Southgate, Paul C. (2015) Haemocyte persistence after grafting for pearl production in Pinctada margaritifera (Linnaeus, 1758). Fish and Shellfish Immunology, 42 (2). pp. 530-532.

Jones, David B., Jerry, Dean R., Khatkar, Mehar S., Moser, Gerhard, Raadsma, Herman W., Taylor, Joseph J., and Zenger, Kyall R. (2014) Determining genetic contributions to host oyster shell growth: quantitative trait loci and genetic association analysis for the silver-lipped pearl oyster, Pinctada maxima. Aquaculture, 434. pp. 367-375.

Jones, David B., Jerry, Dean R., Khatkar, Mehar S., Moser, Gerhard, Raadsma, Herman W., Taylor, Joseph J., and Zenger, Kyall R. (2014) Quantitative trait loci and genetic association analysis reveals insights into complex pearl quality traits in donor silver-lipped pearl oysters. Aquaculture, 434. pp. 476-485.

Kishore, Pranesh, Hunter, Justin, Zeng, Chaoshu, and Southgate, Paul C. (2014) The effects of different culture apparatuses and current velocities on byssus production by the black-lip pearl oyster, Pinctada margaritifera. Aquaculture, 434. pp. 74-77.

Jones, David B., Jerry, Dean R., Khatkar, Mehar S., Raadsma, Herman W., and Zenger, Kyall R. (2013) A high-density SNP genetic linkage map for the silver-lipped pearl oyster, Pinctada maxima: a valuable resource for gene localisation and marker-assisted selection. BMC Genomics, 14. 810. pp. 1-18.

Botté, Emmanuelle S., Smith-Keune, Carolyn, and Jerry, Dean R. (2013) Temperature: a prolonged confounding factor on cholinesterase activity in the tropical reef fish Acanthochromis polyacanthus. Aquatic Toxicology, 140-141. pp. 337-339.

Lind, Curtis E., Evans, Brad S., Elphinstone, Martin S., Taylor, Joseph J.U., and Jerry, Dean R. (2012) Phylogeography of a pearl oyster (Pinctada maxima) across the Indo-Australian Archipelago: evidence of strong regional structure and population expansions but no phylogenetic breaks. Biological Journal of the Linnean Society, 107 (3). pp. 632-646.

Milione, Michael, and Southgate, Paul C. (2012) Reproductive cycle of the winged pearl oyster, Pteria penguin (Röding 1793) (Pteriidae) in north-eastern Australia. Invertebrate Reproduction and Development, 56 (2). pp. 164-171.

Botté, E.S., Jerry, D.R., King, S. Codi, Smith-Keune, C., and Negri, A.P. (2012) Effects of chlorpyrifos on cholinesterase activity and stress markers in the tropical reef fish Acanthochromis polyacanthus. Marine Pollution Bulletin, 65 (4-9). pp. 384-393.

Wassnig, Matthew, and Southgate, Paul C. (2012) Effects of settlement cues on behaviour and substrate attachment of hatchery reared winged pearl oyster (Pteria penguin) larvae. Aquaculture, 344. pp. 216-222.

Wassnig, Matthew, and Southgate, Paul C. (2012) Embryonic and larval development of Pteria penguin (Röding, 1798) (Bivalvia: Pteriidae). Journal of Molluscan Studies, 78 (1). pp. 134-141.

Milione, Michael, and Southgate, Paul (2012) Growth of the winged pearl oyster, Pteria penguin, at dissimilar sites in northeastern Australia. Journal of Shellfish Research, 31 (1). pp. 13-20.

Jones, D.B., Zenger, K.R., and Jerry, D.R. (2011) In silico whole-genome EST analysis reveals 2322 novel microsatellites for the silver-lipped pearl oyster, Pinctada maxima. Marine Genomics, 4 (4). pp. 287-290.

Milione, Michael, and Southgate, Paul (2011) Environmental conditions and culture method effects on growth and survival of juvenile winged pearl oyster, Pteria Penguin. Journal of Shellfish Research, 30 (2). pp. 223-229.

Milione, Michael, Saucedo, Pedro, and Southgate, Paul (2011) Sexual development, sex ratio and morphometrics of Pteria penguin (Bivalvia: Pteriidae), in north-eastern Australia. Molluscan Research, 31 (1). pp. 30-36.

Milione, Michael, and Southgate, Paul (2011) Seasonal changes in recruitment of Pteria penguin in North Queensland, Australia. Journal of Shellfish Research, 30 (1). pp. 89-94.

Wassnig, Matthew, and Southgate, Paul (2011) The effects of egg stocking density and antibiotic treatment on survival and development of winged pearl oyster (Pteria Penguin, Röding 1798) embryos. Journal of Shellfish Research, 30 (1). pp. 103-107.

Welladsen, Heather M., Heimann, Kirsten, and Southgate, Paul C. (2011) The effects of exposure to near-future levels of ocean acidification on activity and byssus Production of the Akoya pearl oyster, Pinctada fucata. Journal of Shellfish Research, 30 (1). pp. 85-88.

Lind, Curtis E., Evans, Brad S., Taylor, Joseph J.U., and Jerry, Dean R. (2010) The consequences of differential family survival rates and equalizing maternal contributions on the effective population size (Ne) of cultured silver-lipped pearl oysters, Pinctada maxima. Aquaculture Research, 41 (8). pp. 1229-1242.

Mamangkey, N. Gustaf F., and Southgate, Paul C. (2009) Regeneration of excised mantle tissue by the silver-lip pearl oyster, Pinctada maxima (Jameson). Fish and Shellfish Immunology, 27 (2). pp. 164-174.

Smith-Keune, Carolyn, and Jerry, Dean R. (2009) High levels of intra-specific variation in the NG repeat region of the Pinctada maxima N66 organic matrix protein. Aquaculture Research, 40 (9). pp. 1054-1063.

Mamangkey, N. Gustav F., Acosta-Salmon, Hector, and Southgate, Paul C. (2009) Use of anaesthetics with the silver-lip pearl oyster, Pinctada maxima (Jameson). Aquaculture, 288 (3-4). pp. 280-284.

Lind, Curtis E., Evans, Brad S., Knauer, Jens, Taylor, Joseph J.U., and Jerry, Dean R. (2009) Decreased genetic diversity and a reduced effective population size in cultured silver-lipped pearl oysters (Pinctada maxima). Aquaculture, 286 (1-2). pp. 12-19.

Lee, Anne M., Williams, Ashley J., and Southgate, Paul C. (2008) Modelling and comparison of growth of the silver-lip pearl oyster Pinctada maxima (Jameson) (Mollusca: Pteriidae) cultured in West Papua, Indonesia. Marine and Freshwater Research, 59. pp. 22-31.

Smith, C., Benzie, J.A.H, and Wilson, K.J. (2003) Isolation and characterization of eight microsatellite loci from silver-lipped pearl oyster Pinctada maxima. Molecular Ecology Notes, 3 (1). pp. 125-127.

Knauer, J., Barrett, S.M., Volkman, J.K., and Southgate, P.C. (1999) Assimilation of dietary phytosterols by Pacific oyster Crassostrea gigas spat. Aquaculture Nutrition, 5 (4). pp. 257-266.

Friedman, Kim J., and Southgate, Paul C. (1999) Growout of blacklip pearl oysters, Pinctada margaritifera collected as wild spat in the Solomon Islands. Journal of Shellfish Research, 18 (1). pp. 159-167.

Doroudi, Mehdi S., Southgate, Paul C., and Mayer, Robert J. (1999) Growth and survival of blacklip pearl oyster larvae fed different densities of microalgae. Aquaculture International, 7 (3). pp. 179-187.

Doroudi, M.S., Southgate, P.C., and Mayer, R.J. (1999) The combined effects of temperature and salinity on embryos and larvae of the black-lip pearl oyster, Pinctada margaritifera (L.). Aquaculture Research, 30 (4). pp. 271-277.

Taylor, Joseph J., Southgate, Paul C., and Rose, Robert A. (1998) Assessment of artificial substrates for collection of hatchery-reared silver-lip pearl oyster (Pinctada maxima, Jameson) spat. Aquaculture, 162 (3-4). pp. 219-230.

Yukihira, H., Klumpp, D.W., and Lucas, J.S. (1998) Comparative effects of microalgal species and food concentration on suspension feeding and energy budgets of the pearl oysters Pinctada margaritifera and P. maxima (Bivalvia: Pteriidae). Marine Ecology Progress Series, 171. pp. 71-84.

Yukihira, H., Klumpp, David, and Lucas, J.S. (1998) Effects of body size on suspension feeding and energy budgets of the pearl oysters Pinctada margaritifera and P. maxima. Marine Ecology Progress Series, 170. pp. 119-130.

Taylor, Joseph J., Southgate, Paul C., Rose, Robert A., and Keegan, Anthony J. (1998) Effects of larval set density on subsequent growth and survival of the silver-lip pearl oyster Pinctada maxima (Jameson). Journal of Shellfish Research, 17 (1). pp. 281-283.

Taylor, Joseph J., Southgate, Paul C., and Rose, Robert A. (1998) Effects of mesh covers on the growth and survival of silver-lip pearl oyster (Pinctada maxima, Jameson) spat. Aquaculture, 162 (3-4). pp. 241-246.

Book Chapter

Southgate, Paul C. (2012) Foods and feeding. In: Lucas, John S., and Southgate, Paul C., (eds.) Aquaculture: farming aquatic animals and plants. Wiley-Blackwell, West Sussex, UK, pp. 188-213.

Appleford, Peter, Lucas, John S., and Southgate, Paul C. (2012) General principles. In: Lucas, John S., and Southgate, Paul C., (eds.) Aquaculture: farming aquatic animals and plants. Wiley-Blackwell, West Sussex, UK, pp. 18-51.

Moorhead, Jonathan, and Knop, Daniel (2012) Ornamentals. In: Lucas, John S., and Southgate, Paul C., (eds.) Aquaculture: farming aquatic animals and plants. Wiley-Blackwell, West Sussex, UK, pp. 583-605.

Zeng, Chaoshu, Cheng, Yongxu, Lucas, John S., and Southgate, Paul C. (2012) Other decapod crustaceans. In: Lucas, John S., and Southgate, Paul C., (eds.) Aquaculture: farming aquatic animals and plants. Wiley-Blackwell, West Sussex, UK, pp. 514-540.

Southgate, Paul C., and Lucas, John S. (2012) Reproduction, life cycles and growth. In: Lucas, John S., and Southgate, Paul C., (eds.) Aquaculture: farming aquatic animals and plants. Wiley-Blackwell, West Sussex, UK, pp. 126-137.

de Nys, Rocky, and Ison, Odette (2008) Biofouling. In: Southgate, Paul C., and Lucas, John S., (eds.) The Pearl Oyster. Elsevier, Oxford, UK, pp. 527-553.

Wada, Katsuhiko T., and Jerry, Dean R. (2008) Population genetics and stock improvement. In: Southgate, Paul C., and Lucs, John S., (eds.) The Pearl Oyster. Elsevier, Oxford, UK, pp. 437-471.

Report

Heasman, Mike, Diggles, Ben K., Hurwood, David, Mather, Peter, Pirozzi, Igor, and Dworjanyn, Symon (2004) Paving the way for continued rapid development of the flat (angasi) oyster (Ostrea angasi) farming industry in New South Wales. Report. NSW Fisheries, Nelson Bay, NSW.

Conference Item

Khatkar, M.S., Jones, D.B., Toole, P.B., Raadsma, H.W., Jerry, D.R., and Zenger, K.R. (2017) Reconstruction of unknown donor genome from chimeric pearl sac tissue and host genotypes in pinctada maxima. In: Proceedings of the Association for the Advancement of Animal Breeding and Genetics. pp. 445-448. From: AAABG 2017: 22nd Conference of the Association for the Advancement of Animal Breeding and Genetics, 2-5 July 2017, Townsville, QLD, Australia.

Jones, D.B., Toole, P.B., Khatkar, M.S., Raadsma, H.W., Jerry, D.R., and Zenger, K.R. (2017) Developing a genomic selection breeding program for complex pearl colour traits within the silver-lipped pearl oyster. In: Proceedings of the Conference of the Association for the Advancement of Animal Breeding and Genetics. pp. 537-540. From: AAABG 2017: 22nd Conference of the Association for the Advancement of Animal Breeding and Genetics, 2-5 July 2017, Townsville, QLD, Australia.

Book

Lucas, John, and Southgate, Paul (2012) Aquaculture: farming aquatic animals and plants. Wiley-Blackwell, West Sussex, UK, pp. 1-648.

Thesis

Lal, Monal M. (2016) Genetic structure, population connectivity and taxonomic identity of the black-lip pearl oyster Pinctada margaritifera (Bivalvia: Pteriidae), across its Indo-Pacific distribution. PhD thesis, James Cook University.

Kishore, Pranesh (2015) Improving the quality of cultured round pearls produced by Pinctada margaritifera in Fiji (Linnaeus, 1758). PhD thesis, James Cook University.

Jones, David Byron (2013) Genomic resources and genetic dissection of complex quantitative traits in the silver-lipped pearl oyster, Pinctada maxima. PhD thesis, James Cook University.

Wassnig, Matthew (2011) Developing hatchery culture techniques for the winged pearl oyster, Pteria penguin (Röding, 1798). PhD thesis, James Cook University.

Milione, Michael (2011) Reproduction and growth of the winged pearl oyster, Pteria penguin (Röding, 1798) in the Great Barrier Reef lagoon. PhD thesis, James Cook University.

Lee, Anne Michelle (2010) Spatio-temporal factors affecting the growth of cultured silver-lip pearl oyster, Pinctada maxima (Jameson) (Mollusca: Pteriidae) in West Papua, Indonesia. PhD thesis, James Cook University.

Lind, Curtis E. (2009) Population genetics, phylogeography and the effects of aquaculture on genetic diversity of the silver-lipped pearl oyster, Pinctada maxima (Jameson). PhD thesis, James Cook University.

Martínez-Fernández, Erika (2007) Use of tropical microalgae species as food for pearl oyster (Pinctada margaritifera L.) larvae. PhD thesis, James Cook University.

Taylor, Joseph James Uel (1999) Juvenile production and culture of the silver-lip pearl oyster, Pinctada maxima (Jameson). PhD thesis, James Cook University.

Vance, Barry James (1994) Shell organic matrices in some pearl oysters and other bivalves. PhD thesis, James Cook University of North Queensland.