Article

Collins, William, Bellwood, David, Morais Araujo, Renato, Waltham, Nathan, and Siqueira Correa, Alexandre (2024) Diel movement patterns in nominally nocturnal coral reef fishes (Haemulidae and Lutjanidae): Intra vs. Interspecific variation. Coral Reefs. (In Press)

Hayes, Chloe, Mitchell, Angus, Mellin, Camille, Booth, David J., Ravasi, Timothy, and Nagelkerken, Ivan (2024) Ecological generalism and physiology mediate fish biogeographic ranges under ocean warming. Proceedings of the Royal Society of London Series B, Biological Sciences, 291 (2015). 20232206.

Waltham, Nathan J., and Sheaves, Marcus (2024) Investigating thermal regime on seawalls to maximise nature positive outcomes for encrusting tropical oysters. Ecological Engineering, 209. 107426.

Webster, Emily, Duce, Stephanie, Hamann, Mark, Murray, Nicholas, Shimada, Takahiro, and Limpus, Colin (2024) Should I stay or should I go? The influence of environmental conditions on green turtle residence time and outward transit in foraging areas. Marine Biology, 171. 144.

Foulquier, Arnaud, Datry, Thibault, Corti, Roland, Von Schiller, Daniel, Tockner, Klement, Stubbington, Rachel, Gessner, Mark, Boyer, Frédéric, Ohlmann, Marc, Thuiller, Wilfried, Rioux, Delphine, Miquel, Christian, Albariño, Ricardo, Allen, Daniel, Altermatt, Florian, Arce, María, Arnon, Shai, Banas, Damien, Banegas-medina, Andy, Beller, Erin, Blanchette, Melanie, Blessing, Joanna, Goncalves Boechat, Iola, Boersma, Kate, Bogan, Michael, Bonada, Núria, Bond, Nick, Brintrup, Katherine, Bruder, Andreas, Burrows, Ryan, Cancellario, Tommaso, Canhoto, Christina, Carlson, Stephanie, Cid, Núria, Cornut, Julien, Danger, Michael, de freitas Terra, Bianca, De Girolamo, Anna Maria, Del Campo, Ruben, Villanueva, Verónica, Dyer, Fiona, Elosegi, Arturo, Febria, Catherine, Figueroa, Ricardo, Four, Brian, Gafny, Sarig, Gomez, Rosa, Gomez-gener, Lluís, Guareschi, Simone, Gucker, Bjorn, Hwan, Jason, Jones, J Iwan, Kubheka, Patrick, Laini, Alex, Langhans, Simone, Launay, Bertrand, Le Goff, Guillaume, Leigh, Catherine, Little, Chelsea, Lorenz, Stefan, Marshall, Jonathan, Sanz, Eduardo J Martin, Mcintosh, Angus, Mendoza-Lera, Clara, Meyer, Elizabeth, Milisa, Marko, Mlambo, Musa, Morais, Manuela, Moya, Nabor, Negus, Peter, Niyogi, Dev, Pagan, Iluminada, Papatheodoulou, Athina, Pappagallo, Giuseppe, Pardo, Isabel, Paril, Petr, Pauls, Steffen, Polasek, Marek, Rodriguez-lozano, Pablo, Rolls, Robert, Sanchez-montoya, Maria, Savic, Ana, Shumilova, Oleksandra, Sridhar, Kandikere, Steward, Alisha, Taleb, Amina, Uzan, Avi, Valladares, Yefrin, Vander Vorste, Ross, Waltham, Nathan J., Zak, Dominik, and Zoppini, Annamaria (2024) Unravelling large-scale patterns and drivers of biodiversity in dry rivers. Nature Communications, 15. 7233.

Chua, Stephen, Switzer, Adam D., Gouramanis, Chris, Dixit, Yama, Bird, Michael I., and Horton, Benjamin P. (2023) Coastal response to Holocene Sea-level change: A case study from Singapore. Marine Geology, 465. 107146.

Silburn, D. Mark, Fillols, Emilie, Rojas-Ponce, Samuel, Lewis, Steve, and McHugh, A.D. (2023) Direct comparison of runoff of residual and knockdown herbicides in sugarcane using a rainfall simulator finds large difference in runoff losses and toxicity relative to diuron. Science of the Total Environment, 863. 160976.

Oubelkheir, Kadija, Ford, Phillip W., Cherukuru, Nagur, Clementson, Lesley A., Petus, Caroline, Devlin, Michelle, Schroeder, Thomas, and Steven, Andrew D.L. (2023) Impact of a Tropical Cyclone on Terrestrial Inputs and Bio-Optical Properties in Princess Charlotte Bay (Great Barrier Reef Lagoon). Remote Sensing, 15 (3). 652.

Sharan, Ashneel, Datta, Bithin, and Lal, Alvin (2023) Integrating numerical modelling and scenario-based sensitivity analysis for saltwater intrusion management: case study of a complex heterogeneous island aquifer system. Environmental Monitoring and Assessment, 195 (5). p. 553.

Borland, Hayden P., Gilby, Ben L., Henderson, Christopher J., Connolly, Rod M., Gorissen, Bob, Ortodossi, Nicholas L., Rummell, Ashley L., Nagelkerken, Ivan, Pittman, Simon J., Sheaves, Marcus, and Olds, Andrew D. (2023) Seafloor Terrain Shapes the Three-dimensional Nursery Value of Mangrove and Seagrass Habitats. Ecosystems, 26. pp. 442-456.

Gill, David A., Blythe, Jessica, Bennett, Nathan, Evans, Louisa, Brown, Katrina, Turner, Rachel A., Baggio, Jacopo A., Baker, Dana, Ban, Natalie C., Brun, Victor, Claudet, Joachim, Darling, Emily, Di Franco, Antonio, Epstein, Graham, Estradivari, Gray, Noella J., Gurney, Georgina G., Horan, Rebecca P., Jupiter, Stacy D., Lau, Jacqueline D., Lazzari, Natali, Lestari, Peni, Mahajan, Shauna L., Mangubhai, Sangeeta, Naggea, Josheena, Selig, Elizabeth R., Whitney, Charlotte K., Zafra-Calvo, Noelia, and Muthiga, Nyawira A. (2023) Triple exposure: Reducing negative impacts of climate change, blue growth, and conservation on coastal communities. One Earth, 6 (2). pp. 118-130.

Hoel, Kristin, Chin, Andrew, and Lau, Jacqueline (2022) Clashing conservation values: The social complexities of shark depredation. Biological Conservation, 272. 109658.

Reckermann, Marcus, Omstedt, Anders, Soomere, Tarmo, Aigars, Juris, Akhtar, Naveed, Bełdowska, Magdalena, Bełdowski, Jacek, Cronin, Tom, Czub, Michał, Eero, Margit, Hyytiäinen, Kari Petri, Jalkanen, Jukka Pekka, Kiessling, Anders, Kjellström, Erik, Kuliński, Karol, Larsén, Xiaoli Guo, McCrackin, Michelle, Meier, H.E.Markus, Oberbeckmann, Sonja, Parnell, Kevin, Pons-Seres De Brauwer, Cristian, Poska, Anneli, Saarinen, Jarkko, Szymczycha, Beata, Undeman, Emma, Wörman, Anders, and Zorita, Eduardo (2022) Human impacts and their interactions in the Baltic Sea region. Earth System Dynamics, 13 (1).

Cooper, Madalyn K., Villacorta-Rath, Cecilia, Burrows, Damien, Jerry, Dean R., Carr, Leah, Barnett, Adam, Huveneers, Charlie, and Simpfendorfer, Colin A. (2022) Practical eDNA sampling methods inferred from particle size distribution and comparison of capture techniques for a Critically Endangered elasmobranch. Environmental DNA, 4 (5). pp. 1011-1023.

Kingsford, Michael J., Krunes, Emily A., and Hall, April E. (2022) Testing the critical size at settlement hypothesis for two species of coral reef fish. Marine Ecology Progress Series, 681. pp. 87-101.

Diedrich, Amy, Duce, Stephanie, Eriksson, Hampus, Govan, Hugh, Harohau, Daykin, Koczberski, Gina, Lau, Jacqueline, Mills, David, Minter, Tessa, Steenbergen, Dirk, and Troell, Max (2022) An applied research agenda for navigating diverse livelihood challenges in rural coastal communities in the tropics. One Earth, 5 (11). pp. 1205-1215.

Wasson, R.J., Smithers, S., Saynor, M., and Nott, J. (2021) Comment on “Recasting geomorphology as a landscape science” by Slaymaker et al. (2021). Geomorphology, 389. 107852.

Kelpšaitė-Rimkienė, Loreta, Parnell, Kevin E., Žaromskis, Rimas, and Kondrat, Vitalijus (2021) Cross-shore profile evolution after an extreme erosion event—Palanga, Lithuania. Journal of Marine Science and Engineering, 9 (1). 38.

Cornwall, Christopher E., Comeau, Steeve, Kornder, Niklas A., Perry, Chris T., van Hooidonk, Ruben, Decarlo, Thomas M., Pratchett, Morgan S., Anderson, Kristen D., Browne, Nicola, Carpenter, Robert, Diaz-Pulido, Guillermo, D'Olivo, Juan P., Doo, Steve S., Figueiredo, Joana, Valero Fortunato, Sofia A.V., Kennedy, Emma, Lantz, Coulson A., McCulloch, Malcolm T., Gonzalez Rivero, Manuel, Schoepf, Verena, Smithers, Scott G., and Rowe, Ryan J. (2021) Global declines in coral reef calcium carbonate production under ocean acidification and warming. Proceedings of the National Academy of Sciences of the United States of America, 118 (21). e2015265118.

Cartwright, Paula J., Fearns, Peter R.C.S., Branson, Paul, Cuttler, Michael V.W., O'Leary, Michael, Browne, Nicola K., and Lowe, Ryan J. (2021) Identifying Metocean Drivers of Turbidity Using 18 Years of MODIS Satellite Data: Implications for Marine Ecosystems under Climate Change. Remote Sensing, 13 (18). 3616.

Coggan, Anthea, Thorburn, Peter, Fielke, Simon, Hay, Rachel, and Smart, James C.R. (2021) Motivators and barriers to adoption of improved land management practices. A focus on practice change for water quality improvement in Great Barrier Reef catchments. Marine Pollution Bulletin, 170. 112628.

Baker, Ronald, and Sheaves, Marcus (2021) Predation in littoral habitats is a complex process: Comment on Whitfield (2020). Marine Ecology - Progress Series, 662. pp. 205-208.

Weisse, Ralf, Dailidiene, Inga, Hünicke, Birgit, Kahma, Kimmo, Madsen, Kristine, Omstedt, Anders, Parnell, Kevin, Schöne, Tilo, Soomere, Tarmo, Zhang, Wenyan, and Zorita, Eduardo (2021) Sea level dynamics and coastal erosion in the Baltic Sea region. Earth System Dynamics, 12 (3). pp. 871-898.

Rätsep, Margus, Parnell, Kevin E., Soomere, Tarmo, Kruusmaa, Maarja, Ristolainen, Asko, and Tuhtan, Jeffrey A. (2021) Surface vessel localization from wake measurements using an array of pressure sensors in the littoral zone. Ocean Engineering, 233. 109156.

Engelbrecht, T.M., Kock, A.A., O'Riain, M.J., Mann, B.Q., Dunlop, S.W., and Barnett, A. (2020) Movements and growth rates of the broadnose sevengill shark Notorynchus cepedianus in southern Africa: results from a long-term cooperative tagging programme. African Journal of Marine Science, 42 (3). pp. 247-259.

Rätsep, Margus, Parnell, Kevin E., and Soomere, Tarmo (2020) Detecting ship wakes for the study of coastal processes. Journal of Coastal Research, 95 (sp1). pp. 1258-1262.

Parnell, Kevin E., Hosking, Peter L., McLean, Roger F., and Nichol, Scott L. (2020) Multidecadal shoreline monitoring at Parengarenga, Northern New Zealand: from dumpy level to LiDAR. Journal of Coastal Research, 101. pp. 165-171.

Parnell, Kevin E., and Smithers, Scott G. (2020) Regional and local variability in coastal processes in Torres Strait, Australia, and its importance for climate change planning. Journal of Coastal Research, 95 (sp1). pp. 616-620.

Rätsep, Margus, Parnell, Kevin E., Soomere, Tarmo, Kruusmaa, Maarja, Ristolainen, Asko, and Tuhtan, Jeffrey A. (2020) Using spectrograms from underwater total pressure sensors to detect passing vessels in a coastal environment. Journal of Atmospheric and Oceanic Technology, 37 (8). pp. 1353-1363.

Scarpa, Gian Marco, Zaggia, Luca, Manfè, Giorgia, Lorenzetti, Giuliano, Parnell, Kevin, Soomere, Tarmo, Rapaglia, John, and Molinaroli, Emanuela (2019) The effects of ship wakes in the Venice Lagoon and implications for the sustainability of shipping in coastal waters. Scientific Reports, 9. 19014.

Dudley, Nigel, Day, Jon, Laffoley, Dan, Hockings, Marc, and Stolton, Sue (2017) Defining marine protected areas: A response to Horta e Costa et al. Marine Policy, 77. pp. 191-192.

Sievers, K.T., Barr, R.J., Maloney, J.M., Driscoll, N.W., and Anderson, T.W. (2016) Impact of habitat structure on fish populations in kelp forests at a seascape scale. Marine Ecology Progress Series, 557. pp. 51-63.

Book Chapter

Attard, Stephen, Connell, John G., and Chaiechi, Taha (2024) Pathways to Improved Water Quality in the GBR Lagoon—Exploring Opportunities for Broadscale Application of Low-Risk Practices in the Lower Burdekin Irrigated Agriculture Areas. In: Wolanski, Eric, and Kingsford, Michael J., (eds.) Oceanographic Processes of Coral Reefs: Physical and Biological Links in the Great Barrier Reef. CRC Press, Boca Raton, Florida, USA, pp. 374-391.

Morgan, Damian (2018) Counting beach visitors: tools, methods and management applications. In: Botero, Camilo M., Cervantes, Omar, and Finkl, Charles W., (eds.) Beach Management Tools - concepts, methodologies and case studies. Coastal Research Library, 24 (24). Springer International Publishing, Cham, Switzerland, pp. 561-577.

Report

Iles, J.A., Cartwright, P.J., and Waltham, N.J. (2023) Whitsunday Water Quality Monitoring Blueprint for Tourism Operators: Annual report 2022-2023. Report. TropWATER, James Cook University, Townsville, QLD, Australia.

Duke, Norman C., McKenzie, Jock, Canning, Adam, Kovacs, John, Cormier, Riley, and Castle, Ysabel (2022) PCPA CHAMP – Port Curtis and Port Alma coastal habitat archive and monitoring program – Final Report. Report. TropWATER, James Cook University, Townsville, QLD, Australia.

Cartwright, P., Iles, J.A., and Waltham, N.J. (2022) Port of Mackay and Hay Point Ambient Marine Water Quality Monitoring Program: Annual Report 2021-2022. Report. TropWATER, James Cook University, Townsville, QLD, Australia.

Conference Item

Colleter, Gildas, Parnell, Kevin, Wharton, Courtney, and Hunt, Shannon (2019) Beach nourishment pattern-placement along the Gold Coast. In: Proceedings of the Australasian Coasts and Ports 2019 Conference (1) pp. 206-212. From: Australasian Coasts & Ports 2019 Conference, 10-13 September 2019, Hobart, TAS, Australia.

Thesis

Cooper, Madalyn K. (2022) Resolving the global distribution of sawfishes (family Pristidae) using environmental DNA. PhD thesis, James Cook University.

Herrera Acosta, César Augusto (2021) Biodiversity beyond species census: assessing organisms' traits and functional attributes using computer vision. PhD thesis, James Cook University.