Megarry, W., Downes, J., Bugumba, R., Day, J. C., Mbogelah, M., Odiaua, I., and Heron, S. F. (2024) Values, climate change and community - Results and lessons learned from the application of the climate vulnerability index in Tanzania and Nigeria. Journal of Cultural Heritage, 66. pp. 562-571.

Losciale, Riccardo, Day, Jon C., Rasheed, Michael A., and Heron, Scott F. (2024) The vulnerability of World Heritage seagrass habitats to climate change. Global Change Biology, 30 (1). e17113.

Heron, S.F., Day, J.C., Dalen, E., Johansen, R., Sonstebo, G., Fontaine, E.H., Boro, M., and Hygen, H.O. (2023) Application of the Climate Vulnerability Index (CVI): Vegaøyan – the Vega Archipelago World Heritage property. Report. Riksantikvaren/Norwegian Environment Agency/Climate Vulnerability Index, Townsville, QLD, Australia.

Bergseth, Brock, and Day, Jon C. (2023) Compliance – The ‘Achilles heel’ of protected areas. Marine Policy, 155. 105728.

Stephenson, Robert L., Hobday, Alistair J., Butler, Ian, Cannard, Toni, Cowlishaw, Mel, Cresswell, Ian, Cvitanovic, Christopher, Day, Jon C., Dobbs, Kirstin, Dutra, Leo X.C., Frusher, Stewart, Fudge, Maree, Fulton, Beth, Gillanders, Bronwyn M., Gollan, Natalie, Haward, Marcus, Hutton, Trevor, Jordan, Alan, McDonald, Jan, Macleod, Catriona, Pecl, Gretta, Plaganyi, Eva E., van Putten, Ingrid, Vince, Joanna, and Ward, Timothy (2023) Integrating management of marine activities in Australia. Ocean & Coastal Management, 234 (March). 106465.

Chin, Andrew, Molloy, Fergus John, Cameron, Darren, Day, Jon C., Cramp, Jessica, Gerhardt, Karin Leeann, Heupel, Michelle R., Read, Mark, and Simpfendorfer, Colin A. (2022) Conceptual frameworks and key questions for assessing the contribution of marine protected areas to shark and ray conservation. Conservation Biology, 37 (1). e13917.

Losciale, Riccardo, Day, Jon, and Heron, Scott (2022) Conservation status, research, and knowledge of seagrass habitats in World Heritage properties. Conservation Science and Practice, 4 (12). e12830.

Jones, Rebecca H., Davies, Mairi H., Day, Jon C., and Heron, Scott F. (2022) Developing Climate Risk Assessments for World Heritage: the Climate Vulnerability Index. Internet Archaeology, 60.

Day, Jon C. (2022) Key principles for effective marine governance, including lessons learned after decades of adaptive management in the Great Barrier Reef. Frontiers in Marine Science, 9. 972228.

Venkatachalam, Taruna, Day, Jon C., and Heron, Scott F. (2022) A systematic approach for defining thematic groups of World Heritage properties to support the strategic management of threats. Environmental Challenges, 8. 100538.

Creighton, Colin, Waterhouse, Jane, Day, Jon C., and Brodie, Jon (2021) Criteria for effective regional scale catchment to reef management: a case study of Australia's Great Barrier Reef. Marine Pollution Bulletin, 173 (Part A). 112882.

Grorud-Colvert, Kirsten, Sullivan-Stack, Jenna, Roberts, Callum, Constant, Vanessa, Horta e Costa, Barbara, Pike, Elizabeth P., Kingston, Naomi, Laffoley, Dan, Sala, Enric, Claudet, Joachim, Friedlander, Alan M., Gill, David A., Lester, Sarah E., Day, Jon C., Gonçalves, Emanuel J., Ahmadia, Gabby N., Rand, Matt, Villagomez, Angelo, Ban, Natalie C., Gurney, Georgina G., Spalding, Ana K., Bennett, Nathan J., Briggs, Johnny, Morgan, Lance E., Moffitt, Russell, Deguignet, Marine, Pikitch, Ellen K., Darling, Emily S., Jessen, Sabine, Hameed, Sarah O., Di Carlo, Giuseppe, Guidetti, Paolo, Harris, Jean M., Torre, Jorge, Kizilkaya, Zafer, Agardy, Tundi, Cury, Philippe, Shah, Nirmal J., Sack, Karen, Cao, Ling, Fernandez, Miriam, and Lubchenco, Jane (2021) The MPA guide: a framework to achieve global goals for the ocean. Science, 373 (6560). eabf0861.

Vince, Joanna, and Day, Jon C. (2020) Effective integration and integrative capacity in marine spatial planning. Maritime Studies, 19. pp. 317-332.

Robin, Libby, and Day, Jon C. (2020) Maxwell Frank Cooper Day 1915-2017. Historical Records of Australian Science, 31 (1). pp. 39-53.

Day, Jonathan (Jon) C. (2020) Ensuring effective and transformative policy reform: lessons from rezoning Australia's Great Barrier Reef, 1999-2004. PhD thesis, James Cook University.

Pratchett, Morgan, Bridge, Thomas, Brodie, Jon, Cameron, Darren, Day, Jonathan, Emslie, Mike, Grech, Alana, Hamann, Mark, Heron, Scott, Hoey, Andrew, Hoogenboom, Mia, Lough, Janice, Morrison, Tiffany, Osborne, Kate, Read, Mark, Schauble, Chloe, Smithers, Scott, Sweatman, Hugh, and Waterhouse, Jane (2019) Australia's Great Barrier Reef. In: Sheppard, Charles, (ed.) World Seas: an environmental evaluation. Elsevier, London, UK, pp. 333-362.

Bellwood, David R., Pratchett, Morgan S., Morrison, Tiffany H., Gurney, Georgina G., Hughes, Terry P., Álvarez-Romero, Jorge G., Day, Jon C., Grantham, Ruby, Grech, Alana, Hoey, Andrew S., Jones, Geoffrey P., Pandolfi, John M., Tebbett, Sterling B., Techera, Erika, Weeks, Rebecca, and Cumming, Graeme S. (2019) Coral reef conservation in the Anthropocene: confronting spatial mismatches and prioritizing functions. Biological Conservation, 236. pp. 604-615.

Saunders, Fred, Gilek, Michael, Day, Jon, Hassler, Björn, McCann, Jennifer, and Smythe, Tiffany (2019) Examining the role of integration in marine spatial planning: towards an analytical framework to understand challenges in diverse settings. Ocean & Coastal Management, 169. pp. 1-9.

Day, Jon C., Kenchington, Richard A., Tanzer, John M., and Cameron, Darren S. (2019) Marine zoning revisited: how decades of zoning the Great Barrier Reef has evolved as an effective spatial planning approach for marine ecosystem-based management. Aquatic Conservation: marine and freshwater ecosystems, 29 (52 (S2)). pp. 9-32.

Alvarez-Romero, Jorge C., Mills, Morena, Adams, Vanessa M., Gurney, Georgina G., Pressey, Robert L., Weeks, Rebecca, Ban, Natalie C., Cheok, Jessica, Davis, Tammy E., Day, Jon C., Hamel, Melanie A., Leslie, Heather M., Magris, Rafael A., and Storlie, Collin J. (2018) Research advances and gaps in marine planning: towards a global database in systematic conservation planning. Biological Conservation, 227. pp. 369-382.

Richards, Zoe T., and Day, Jon C. (2018) Biodiversity of the Great Barrier Reef: how adequately is it protected? PeerJ, 6. e4747.

Day, Jon C. (2018) Counterpoint to Agardy. ICES Journal of Marine Science, 75 (3). p. 1186.

Day, Jon C. (2018) Day's Final Word. ICES Journal of Marine Science, 75 (3). p. 1192.

Day, Jon C. (2018) How effective is the management of the Great Barrier Reef? ICES Journal of Marine Science, 75 (3). pp. 1188-1190.

Laffoley, Dan, Baxter, John M., Day, Jon C., Wenzel, Lauren, Bueno, Paula, and Zischka, Katherine (2018) Marine protected areas. In: Sheppard, Charles, (ed.) World Seas: An Environmental Evaluation: Volume III: Ecological Issues and Environmental Impacts. Elsevier, London, UK, pp. 549-569.

Dudley, Nigel, Hockings, Marc, Stolton, Sue, Amend, Thora, Badola, Ruchi, Bianco, Mariasole, Chettri, Nakul, Cook, Carly, Day, Jon C., Dearden, Phil, Edwards, Mary, Ferraro, Paul, Foden, Wendy, Gambino, Roberto, Gaston, Kevin J., Hayward, Natalie, Hickey, Valerie, Irving, Jason, Jeffries, Bruce, Karapetyan, Areg, Kettunen, Marianne, Laestadius, Lars, Laffoley, Dan, Lham, Dechen, Lichtenstein, Gabriela, Makombo, John, Marshall, Nina, McGeoch, Melodie, Nguyen, Dao, Nogué, Sandra, Paxton, Midori, Rao, Madhu, Reichelt, Russell, Rivas, Jorge, Roux, Dirk, Rutte, Claudia, Schreckenberg, Kate, Sovinc, Andrej, Sutyrina, Svetlana, Utomo, Agus, Vallauri, Daniel, Vedeld, Pål Olav, Verschuuren, Bas, Waithaka, John, Woodley, Stephen, Wyborn, Carina, and Zhang, Yan (2018) Priorities for protected area research. Parks: the international journal of protected areas and coservation, 24 (1). pp. 35-50.

Christie, Patrick, Bennett, Nathan J., Gray, Noella J., Wilhelm, T. ‘Aulani, Lewis, Nai‘a, Parks, John, Ban, Natalie C., Gruby, Rebecca L., Gordon, Lindsay, Day, Jon, Taei, Sue, and Friedlander, Alan M. (2017) Why people matter in ocean governance: incorporating human dimensions into large-scale marine protected areas. Marine Policy, 84. pp. 273-284.

Wenger, Amelia, Ahmadia, Gabby, Alvarez-Romero, Jorge, Barnes, Megan, Blythe, Jessica, Brodie, Jon, Day, Jonathan, Fox, Helen, Gill, David, Gomez, Nicole Auil, Gurney, Georgina, Holmes, Katherine, Jupiter, Stacy, Lamb, Joleah, Mangubhai, Sangeeta, Matthews, Elizabeth, Matthews, Kathryn, Pressey, Bob, Teneva, Leda, Tewfik, Alexander, Wells, Sue, and Darling, Emily (2017) Coral reef conservation solution-scape white paper. Report. Wildlife Conservation Society, New York, NY.

Nicoll, Rob, and Day, Jon C. (2017) Correct application of the IUCN protected area management categories to the CCAMLR Convention Area. Marine Policy, 77. pp. 9-12.

Dudley, Nigel, Day, Jon, Laffoley, Dan, Hockings, Marc, and Stolton, Sue (2017) Defining marine protected areas: A response to Horta e Costa et al. Marine Policy, 77. pp. 191-192.

Day, Jon C. (2017) Effective public participation is fundamental for marine conservation-lessons from a large-scale MPA. Coastal Management, 45 (6). pp. 470-486.

Gray, Noella J., Bennett, Nathan J., Day, Jon C., Gruby, Rebecca L., Wilhelm, T. 'Aulani, and Christie, Patrick (2017) Human dimensions of large-scale marine protected areas: advancing research and practice. Coastal Management, 45 (6). pp. 407-415.

Heron, Scott F., Eakin, C. Mark, Douvere, Fanny, Anderson, Kristen, Day, Jon C., Geiger, Erick, Hoegh-Guldberg, Ove, van Hooidonk, Ruben, Hughes, Terry, Marshall, Paul, and Obura, David (2017) Impacts of climate change on World Heritage coral reefs: a first global scientific assessment. Report. UNESCO World Heritage Centre, Paris.

Bennett, Nathan J., Teh, Lydia, Ota, Yoshitaka, Christie, Patrick, Ayers, Adam, Day, Jon C., Franks, Phil, Gill, David, Gruby, Rebecca L., Kittinger, John N., Koehn, J. Zachary, Lewis, Nai'a, Parks, John, Vierros, Marjo, Whitty, Tara S., Wilhelm, Aulani, Wright, Kim, Aburto, Jaime A., Finkbeiner, Elena M., Gaymer, Carlos F., Govan, Hugh, Gray, Noella, Jarvis, Rebecca M., Kaplan-Hallam, Maery, and Satterfield, Terre (2017) An appeal for a code of conduct for marine conservation. Marine Policy, 81. pp. 411-418.

Hughes, T.P., Cameron, D.S., Chin, A., Connolly, S.R., Day, J.C., Jones, G.P., McCook, L., McGinnity, P., Mumby, P.J., Pears, R.J., Pressey, R.L., Russ, G.R., Tanzer, J., Tobin, A., and Young, M.A.L. (2016) A critique of claims for negative impacts of Marine Protected Areas on fisheries. Ecological Applications, 26 (2). pp. 637-641.

Grech, A., Pressey, R.L., and Day, J.C. (2016) Coal, cumulative impacts, and the Great Barrier Reef. Conservation Letters, 9 (3). pp. 200-207.

Agardy, Tundi, Claudet, Joachim, and Day, Jon C. (2016) 'Dangerous Targets' revisited: old dangers in new contexts plague marine protected areas. Aquatic Conservation: marine and freshwater ecosystems, 26 (Supplement S2). pp. 7-23.

Hughes, Terry P., Day, Jon C., and Brodie, Jon (2015) Securing the future of the Great Barrier Reef. Nature Climate Change, 5. pp. 508-511.

Pressey, Robert L., Mills, Morena, Weeks, Rebecca, and Day, Jon C. (2013) The plan of the day: managing the dynamic transition from regional conservation designs to local conservation actions. Biological Conservation, 166. pp. 155-169.

Kerrigan, Brigid, Breen, Daniel, De'ath, Glenn, Day, Jon, Fernandes, Leanne, Tobin, Renae, and Dobbs, Kirstin (2010) Classifying the Biodiversity of the Great Barrier Reef World Heritage Area. Report. Great Barrier Reef Marine Park Authority, Townsville, QLD, Australia.

Fernandes, Leanne, Day, Jon, Kerrigan, Brigid, Breen, Dan, De'ath, Glenn, Mapstone, Bruce, Coles, Rob, Done, Terry, Marsh, Helene, Poiner, Ian, Ward, Trevor, Williams, David, and Kenchington, Richard (2009) A process to design a network of marine no-take areas: lessons from the Great Barrier Reef. Ocean & Coastal Management, 52 (8). pp. 439-447.

McCook, L.J., Almany, G.R., Berumen, M.L., Day, J.C., Green, A.L., Jones, G.P., Leis, J.M., Planes, S., Russ, G.R., Sale, P.F., and Thorrold, S.R. (2009) Management under uncertainty: guide-lines for incorporating connectivity into the protection of coral reefs. Coral Reefs, 28 (2). pp. 353-366.

Dobbs, Kirstin, Fernandes, Leanne, Slegers, Suzanne, Jago, Belinda, Thompson, Leanne, Hall, James, Day, Jon, Cameron, Darren, Tanzer, John, Macdonald, Fiona, Marsh, Helene, and Coles, Rob (2008) Incorporating dugong habitats into the marine protected area design for the Great Barrier Reef Marine Park, Queensland, Australia. Ocean & Coastal Management, 51 (4). pp. 368-375.

Fernandes, Leanne, Day, Jon, Lewis, Adam, Slegers, Suzanne, Kerrigan, Brigid, Breen, Dan, Cameron, Darren, Jago, Belinda, Hall, James, Lowe, Dave, Innes, James, Tanzer, John, Chadwick, Virginia, Thompson, Leanne, Gorman, Kerrie, Simmons, Mark, Barnett, Bryony, Sampson, Kirsti, De'ath, Glenn, Mapstone, Bruce, Marsh, Helene, Possingham, Hugh, Ball, Ian, Ward, Trevor, Dobbs, Kirstin, Aumend, James, Slater, Deb, and Stapleton, Kate (2005) Establishing representative no-take areas in the Great Barrier Reef: large-scale implementation of theory on marine protected areas. Conservation Biology, 19 (6). pp. 1733-1744.