Wong, Yide, Meehan, Michael, Burrows, Scott, Doolan, Denise, and Miles, John (2022) Estimating the global burden of Epstein–Barr virus‑related cancers. Journal of Cancer Research and Clinical Oncology, 148. pp. 31-46.

Miles, John, Watkins, Thomas, Darko, Sam, Wijaya, Kuatrinnus, Cooper, Martha, Ransier, Amy, Waardenberg, Ashley, Amante, Fiona, Mccarthy, James, Price, David, Burrows, Scott, Doolan, Denise, Field, Matt, and Douek, Daniel (2022) T cell differentiation and lineage choice are determined by the TCR. FASEB Journal, 36 (S1).

Laugel, Bruno, Lloyd, Angharad, Meermeier, Erin W., Crowther, Michael D., Connor, Thomas R., Dolton, Garry, Miles, John J., Burrows, Scott R., Gold, Marielle C., Lewinsohn, David M., and Sewell, Andrew K. (2016) Engineering of isogenic cells deficient for MR1 with a CRISPR/Cas9 lentiviral system: tools to study microbial antigen processing and presentation to human MR1-restricted T cells. Journal of Immunology, 197 (3). pp. 971-982.

Szomolay, Barbara, Liu, Jie, Brown, Paul E., Miles, John J., Clement, Mathew, Llewellyn-Lacey, Sian, Dolton, Garry, Ekeruche-Makinde, Julia, Lissina, Anya, Schauenburg, Andrea J., Sewell, Andrew K., Burrows, Scott R., Roederer, Mario, Price, David A., Wooldridge, Linda, and van den Berg, Hugo A. (2016) Identification of human viral protein-derived ligands recognized by individual MHCI-restricted T-cell receptors. Immunology and Cell Biology, 94 (6). pp. 573-582.

Smith, Corey, Brennan, Rebekah M., Tey, Siok-Keen, Smyth, Mark J., Burrows, Scott R., Miles, John J., Hill, Geoffrey R., and Khanna, Rajiv (2016) Coinfection with human cytomegalovirus genetic variants in transplant recipients and its impact on antiviral T cell immune reconstitution. Journal of Virology, 90 (6). pp. 7497-7507.

Ando, Miki, Nishimura, Toshinobu, Yamazaki, Satoshi, Yamaguchi, Tomoyuki, Kawana-Tachikawa, Ai, Hayama, Tomonari, Nakauchi, Yusuke, Ando, Jun, Ota, Yasunori, Takahashi, Satoshi, Nishimura, Ken, Ohtaka, Manami, Nakanishi, Mahito, Miles, John J., Burrows, Scott R., Brenner, Malcolm K., and Nakauchi, Hiromitsu (2015) A safeguard system for induced pluripotent stem cell-derived rejuvenated T cell therapy. Stem Cell Reports, 5 (4). pp. 597-608.

Neller, Michelle A., Ladell, Kristin, McLaren, James E., Matthews, Katherine K., Gostick, Emma, Pentier, Johanne M., Dolton, Garry, Schauenburg, Andrea J.A., Koning, Dan, Fontaine Costa, Ana Isabel C.A., Watkins, Thomas S., Venturi, Vanessa, Smith, Corey, Khanna, Rajiv, Miners, Kelly, Clement, Mathew, Wooldridge, Linda, Cole, David K., van Baarle, Debbie, Sewell, Andrew K., Burrows, Scott R., Price, David A., and Miles, John J. (2015) Naive CD8⁺ T-cell precursors display structured TCR repertoires and composite antigen-driven selection dynamics. Immunology and Cell Biology, 93 (7). pp. 625-633.

Rist, Melissa J., Hibbert, Kelly M., Croft, Nathan P., Smith, Corey, Neller, Michelle A., Burrows, Jacqueline M., Miles, John J., Purcell, Anthony W., Rossjohn, Jamie, Gras, Stephanie, and Burrows, Scott R. (2015) T cell cross-reactivity between a highly immunogenic EBV epitope and a self-peptide naturally presented by HLA-B*18:01⁺ cells. Journal of Immunology, 194 (10). pp. 4668-4675.

Brennan, Rebekah M., Burrows, Jacqueline M., Elliott, Thomas, Neller, Michelle A., Gras, Stephanie, Rossjohn, Jamie, Miles, John J., and Burrows, Scott J. (2014) Missense single nucleotide polymorphisms in the human T cell receptor loci control variable gene usage in the T cell repertoire. British Journal of Haematology, 166 (1). pp. 148-152.

Liu, Yu Chih, Chen, Zhenjun, Neller, Michelle A., Miles, John J., Purcell, Anthony W., McCluskey, James, Burrows, Scott R., Rossjohn, Jamie, and Gras, Stephanie (2014) A molecular basis for the interplay between T cells, viral mutants, and human leukocyte antigen micropolymorphism. Journal of Biological Chemistry, 289 (24). pp. 16688-16698.

Lau, Lei Shong, Fernandez-Ruiz, Daniel, Mollard, Vanessa, Sturm, Angelika, Neller, Michelle A., Cozijnsen, Anton, Gregory, Julia L., Davey, Gayle M., Jones, Claerwen M., Lin, Yi-Hsuan, Haque, Ashraful, Engwerda, Christian R., Nie, Catherine Q., Hansen, Diana S., Murphy, Kenneth M., Papenfuss, Anthony T., Miles, John J., Burrows, Scott R., de Koning-Ward, Tania, McFadden, Geoffrey I., Carbone, Francis R., Crabb, Brendan S., and Heath, William R. (2014) CD8⁺ T cells from a novel T cell receptor transgenic mouse induce liver-stage immunity that can be boosted by blood-stage infection in rodent malaria. PLoS Pathogens, 10 (5). e1004135. pp. 1-16.

Smith, Corey, Gras, Stephanie, Brennan, Rebekah M., Bird, Nicola L., Valkenburg, Sophie A., Twist, Kelly-Anne, Burrows, Jacqueline M., Miles, John J., Chambers, Daniel, Bell, Scott, Campbell, Scott, Kedzierska, Katherine, Burrows, Scott R., Rossjohn, Jamie, and Khanna, Rajiv (2014) Molecular imprint of exposure to naturally occurring genetic variants of human cytomegalovirus on the T cell repertoire. Scientific Reports, 4. 3993. pp. 1-10.

Neller, Michelle A., Santner-Nanan, Brigitte, Brennan, Rebekah M., Hsu, Peter, Joung, Steven, Nanan, Ralph, Burrows, Scott R., and Miles, John J. (2014) Multivariate analysis using high definition flow cytometry reveals distinct T cell repertoires between the fetal–maternal interface and the peripheral blood. Frontiers in Immunology, 5. 33. pp. 1-6.

Li, Shuo, Lefranc, Marie-Paule, Miles, John J., Alamyar, Eltaf, Giudicelli, Véronique, Duroux, Patrice, Freeman, J. Douglas, Corbin, Vincent D.A., Scheerlinck, Jean-Pierre, Frohman, Michael A., Cameron, Paul U., Plebanski, Magdalena, Loveland, Bruce, Burrows, Scott, Papenfuss, Anthony T., and Gowans, Eric J. (2013) IMGT/HighV QUEST paradigm for T cell receptor IMGT clonotype diversity and next generation repertoire immunoprofiling. Nature Communications, 4. 2333. pp. 1-13.

Burrows, Scott R., and Miles, John J. (2013) Immune parameters to consider when choosing T-cell receptors for therapy. Frontiers in Immunology, 4. 229. pp. 1-6.

Rist, Melissa J., Theodossis, Alex, Croft, Nathan P., Neller, Michelle A., Welland, Andrew, Chen, Zhenjun, Sullivan, Lucy C., Burrows, Jacqueline M., Miles, John J., Brennan, Rebekah M., Gras, Stephanie, Khanna, Rajiv, Brooks, Andrew G., McCluskey, James, Purcell, Anthony W., Rossjohn, Jamie, and Burrows, Scott R. (2013) HLA peptide length preferences control CD8+ T cell responses. Journal of Immunology, 191 (2). pp. 561-571.

Liu, Yu Chih, Miles, John J., Neller, Michelle A., Gostick, Emma, Price, David A., Purcell, Anthony W., McCluskey, James, Burrows, Scott R., Rossjohn, Jamie, and Gras, Stephanie (2013) Highly divergent T-cell receptor binding modes underlie specific recognition of a bulged viral peptide bound to a human leukocyte antigen class I molecule. Journal of Biological Chemistry, 288 (22). pp. 15442-15454.

Ekeruche-Makinde, Julia, Miles, John J., van den Berg, Hugo A., Skowera, Ania, Cole, David K., Dolton, Garry, Schauenburg, Andrea J.A., Tan, Mai Ping, Pentier, Johanne M., Llewellyn-Lacey, Sian, Miles, Kim M., Bulek, Anna M., Clement, Mathew, Williams, Tamsin, Trimby, Andrew, Bailey, Mick, Rizkallah, Pierre, Rossjohn, Jamie, Peakman, Mark, Price, David A., Burrows, Scott R., Sewell, Andrew K., and Wooldridge, Linda (2013) Peptide length determines the outcome of TCR/peptide-MHCI engagement. Blood, 121 (7). pp. 1112-1123.

Neller, M.A., Burrows, J.M., Rist, M.J., Miles, J.J., and Burrows, S.R. (2013) High frequency of herpesvirus-specific clonotypes in the human T cell repertoire can remain stable over decades with minimal turnover. Journal of Virology, 87 (1). pp. 697-700.

Neller, Michelle A., Sewell, Andrew k., Burrows, Scott R., and Miles, John J. (2012) Tracking the repertoire of human adult and neonatal T cells during ex vivo amplification. British Journal of Haematology, 159 (3). pp. 370-373.

Illing, Patricia T., Vivian, Julian P., Dudek, Nadine L., Kostenko, Lyudmila, Chen, Zhenjun, Bharadwaj, Mandvi, Miles, John J., Kjer-Nielsen, Lars, Gras, Stephanie, Williamson, Nicholas A., Burrows, Scott R., Purcell, Anthony W., Rossjohn, Jamie, and McCluskey, James (2012) Immune self-reactivity triggered by drug-modified HLA-peptide repertoire. Nature, 486 (7404). pp. 554-558.

Brennan, Rebekah M., Petersen, Jan, Neller, Michelle A., Miles, John J., Burrows, Jacqueline M., Smith, Corey, McCluskey, James, Khanna, Rajiv, Rossjohn, Jamie, and Burrows, Scott R. (2012) The impact of a large and frequent deletion in the human TCR β locus on antiviral immunity. Journal of Immunology, 188 (6). pp. 2742-2748.

Clement, Mathew, Ladell, Kristin, Ekeruche-Makinde, Julia, Miles, John J., Edwards, Emily S.J., Dolton, Garry, Williams, Tamsin, Schauenburg, Andrea J.A., Cole, David K., Lauder, Sarah N., Gallimore, Awen M., Godkin, Andrew J., Burrows, Scott R., Price, David A., Sewell, Andrew K., and Wooldridge, Linda (2011) Anti-CD8 Antibodies Can Trigger CD8⁺ T Cell Effector Function in the Absence of TCR Engagement and Improve Peptide-MHCI Tetramer Staining. Journal of Immunology, 187 (2). pp. 654-663.

Miles, John J., Thammanichanond, Duangtawan, Moneer, Sarah, Nivarthi, Usha K., Kjer-Nielsen, Lars, Tracy, Samantha L., Aitken, Campbell K., Brennan, Rebekah M., Zeng, Weiguang, Marquart, Louise, Jackson, David, Burrows, Scott R., Bowden, David S., Torresi, Joseph, Hellard, Margaret, Rossjohn, Jamie, McCluskey, James, and Bharadwaj, Mandvi (2011) Antigen-driven patterns of TCR bias are shared across diverse outcomes of human hepatitis C virus infection. Journal of Immunology, 186 (2). pp. 901-912.

Miles, John J., Bulek, Anna M., Cole, David k., Gostick, Emma, Schauenburg, Andrea J.A., Dolton, Garry, Venturi, Vanessa, Davenport, Miles P., Tan, Mai Ping, Burrows, Scott, Wooldridge, Linda, Price, David A., Rizkallah, Pierre J., and Sewell, Andrew K. (2010) Genetic and structural basis for selection of a ubiquitous T cell receptor deployed in Epstein-Barr virus infection. PLoS Pathogens, 6 (11). e1001198. pp. 1-15.

Gras, Stephanie, Chen, Zhenjun, Miles, John J., Liu, Yu Chih, Bell, Melissa J., Sullivan, Lucy C., Kjer-Nielsen, Lars, Brennan, Rebekah M., Burrows, Jacqueline M., Neller, Michelle A., Khanna, Rajiv, Purcell, Anthony W., Brooks, Andrew G., McCluskey, James, Rossjohn, Jamie, and Burrows, Scott R. (2010) Allelic polymorphism in the T cell receptor and its impact on immune responses. The Journal of Experimental Medicine, 207 (7). pp. 1555-1567.

Burrows, Scott R., Chen, Zhenjun, Archbold, Julia K., Tynan, Fleur E., Beddoe, Travis, Kjer-Nielsen, Lars, Miles, John J., Khanna, Rajiv, Moss, Denis J., Liu, Yu Chih, Gras, Stephanie, Kostenko, Lyudmila, Brennan, Rebekah M., Clements, Craig S., Brooks, Andrew G., Purcell, Anthony W., McCluskey, James, and Rossjohn, Jamie (2010) Hard wiring of T cell receptor specificity for the major histocompatibility complex is underpinned by TCR adaptability. Proceedings of the National Academy of Sciences, 107 (23). pp. 10608-10613.

Wooldridge, Linda, Clement, Mathew, Lissina, Anna, Edwards, Emily S.J., Ladell, Kristin, Ekeruche, Julia, Hewitt, Rachel E., Laugel, Bruno, Gostick, Emma, Cole, David K., Debets, Reno, Berrevoets, Cor, Miles, John J., Burrows, Scott R., Price, David A., and Sewell, Andrew K. (2010) MHC Class I molecules with superenhanced CD8 binding properties bypass the requirement for cognate TCR recognition and nonspecifically activate CTLs. Journal of Immunology, 184 (7). pp. 3357-3366.

Bell, Melissa J., Burrows, Jacqueline M., Brennan, Rebekah, Miles, John J., Tellam, Judy, McCluskey, James, Rossjohn, Jamie, Khanna, Rajiv, and Burrows, Scott R. (2009) The peptide length specificity of some HLA class I alleles is very broad and includes peptides of up to 25 amino acids in length. Molecular Immunology, 46 (8-9). pp. 1911-1917.

Archbold, Julia K., Macdonald, Whitney A., Gras, Stephanie, Ely, Lauren K., Miles, John J., Bell, Melissa J., Brennan, Rebekah M., Beddoe, Travis, Wilce, Matthew C.J., Clements, Craig S., Purcell, Anthony W., McCluskey, James, Burrows, Scott R., and Rossjohn, Jamie (2009) Natural micropolymorphism in human leukocyte antigens provides a basis for genetic control of antigen recognition. The Journal of Experimental Medicine, 206 (1). pp. 209-219.

Bell, Melissa J., Brennan, Rebekah, Miles, John J., Moss, Denis J., Burrows, Jacqueline M., and Burrows, Scott R. (2008) Widespread sequence variation in Epstein‐Barr virus nuclear antigen 1 influences the antiviral T cell response. Journal of Infectious Diseases, 197 (11). pp. 1594-1597.

Wynn, Katherine K., Fulton, Zara, Cooper, Leanne, Silins, Sharon L., Gras, Stephanie, Archbold, Julia K., Tynan, Fleur E., Miles, John J., McCluskey, James, Burrows, Scott R., Rossjohn, Jamie, and Khanna, Rajiv (2008) Impact of clonal competition for peptide-MHC complexes on the CD8⁺ T-cell repertoire selection in a persistent viral infection. Blood, 111 (8). pp. 4283-4292.

Burrows, Jacqueline M., Bell, Melissa J., Brennan, Rebekah, Miles, John J., Khanna, Rajiv, and Burrows, Scott R. (2008) Preferential binding of unusually long peptides to MHC class I and its influence on the selection of target peptides for T cell recognition. Molecular Immunology, 45 (6). pp. 1818-1824.

Elliott, Suzanne L., Suhrbier, Andreas, Miles, John J., Lawrence, Greg, Pye, Stephanie J., Le, Thuy T., Rosenstengel, Andrew, Nguyen, Tam, Allworth, Anthony, Burrows, Scott R., Cox, John, Pye, David, Moss, Denis J., and Bharadwaj, Mandvi (2008) Phase I trial of a CD8+ T-cell peptide epitope-based vaccine for infectious mononucleosis. Journal of Virology, 82 (3). pp. 1448-1457.

Brennan, Rebekah M., Miles, John J., Silins, Sharon L., Bell, Melissa J., Burrows, Jacqueline M., and Burrows, Scott R. (2007) Predictable αβ T-cell receptor selection toward an HLA-B*3501-restricted human cytomegalovirus epitope. Journal of Virology, 81 (13). pp. 7269-7273.

Burrows, Jacqueline M., Wynn, Katherine K., Tynan, Fleur E., Archbold, Julia, Miles, John J., Bell, Melissa J., Brennan, Rebekah M., Walker, Susan, McCluskey, James, Rossjohn, Jamie, Khanna, Rajiv, and Burrows, Scott R. (2007) The impact of HLA-B micropolymorphism outside primary peptide anchor pockets on the CTL response to CMV. European Journal of Immunology, 37 (4). pp. 946-953.

Tynan, Fleur E., Reid, Hugh H., Kjer-Nielsen, Lars, Miles, John J., Wilce, Matthew C.J., Kostenko, Lyudmila, Borg, Natalie A., Williamson, Nicholas A., Beddoe, Travis, Purcell, Anthony W., Burrows, Scott R., McCluskey, James, and Rossjohn, Jamie (2007) A T cell receptor flattens a bulged antigenic peptide presented by a major histocompatibility complex class I molecule. Nature Immunology, 8 (3). pp. 268-276.

Miles, John J., Borg, Natalie A., Brennan, Rebekah M., Tynan, Fleur E., Kjer-Nielsen, Lars, Silins, Sharon L., Bell, Melissa J., Burrows, Jacqueline, McCluskey, James, Rossjohn, Jamie, and Burrows, Scott R. (2006) TCR genes direct MHC restriction in the potent human T cell response to a class I-bound viral epitope. Journal of Immunology, 177 (10). pp. 6804-6814.

Archbold, Julia K., Macdonald, Whitney A., Miles, John J., Brennan, Rebekah M., Kjer-Nielsen, Lars, McCluskey, James, Burrows, Scott R., and Rossjohn, Jamie (2006) Alloreactivity between disparate cognate and allogeneic pMHC-I complexes is the result of highly focused, peptide-dependent structural mimicry. Journal of Biological Chemistry, 281 (45). pp. 34324-34332.

Miles, John J., Silins, Sharon L., and Burrows, Scott R. (2006) Engineered T cell receptors and their potential in molecular medicine. Current Medicinal Chemistry, 13 (23). pp. 2725-2736.

Miles, John J., Silins, Sharon L., Brooks, Andrew G., Davis, Joanne E., Misko, Ihor, and Burrows, Scott R. (2005) T-cell grit: large clonal expansions of virus-specific CD8⁺ T cells can dominate in the peripheral circulation for at least 18 years. Blood, 106 (13). pp. 4412-4413.

Tynan, Fleur E., Elhassen, Diah, Purcell, Anthony W., Burrows, Jacqueline M., Borg, Natalie A., Miles, John J., Williamson, Nicholas A., Green, Kate A., Tellam, Judy, Kjer-Nielsen, Lars, McCluskey, James, Rossjohn, Jamie, and Burrows, Scott r. (2005) The immunogenicity of a viral cytotoxic T cell epitope is controlled by its MHC-bound conformation. The Journal of Experimental Medicine, 202 (9). pp. 1249-1260.

Miles, John J., Elhassen, Diah, Borg, Natalie A., Silins, Sharon L., Tynan, Fleur E., Burrows, Jacqueline M., Purcell, Anthony W., Kjer-Nielsen, Lars, Rossjohn, Jamie, Burrows, Scott R., and McCluskey, James (2005) CTL recognition of a bulged viral peptide involves biased TCR selection. Journal of Immunology, 175 (6). pp. 3826-3834.

Tynan, Fleur E., Borg, Natalie A., Miles, John J., Beddoe, Travis, El-Hassen, Diah, Silins, Sharon L., van Zuylen, Wendy J.M., Purcell, Anthony W., Kjer-Nielsen, Lars, McCluskey, James, Burrows, Scott R., and Rossjohn, Jamie (2005) High resolution structures of highly bulged viral epitopes bound to major histocompatibility complex class I: implications for T-cell receptor engagement and T-cell immunodominance. Journal of Biological Chemistry, 280 (25). pp. 23900-23909.

Ely, Lauren K., Green, Katherine J., Beddoe, Travis, Clements, Craig S., Miles, John J., Bottomley, Stephen P., Zernich, Danielle, Kjer-Nielsen, Lars, Purcell, Anthony W., McCluskey, James, Rossjohn, Jamie, and Burrows, Scott R. (2005) Antagonism of antiviral and allogeneic activity of a human public CTL clonotype by a single altered peptide ligand: implications for allograft rejection. Journal of Immunology, 174 (9). pp. 5593-5601.

Borg, Natalie A., Ely, Lauren K., Beddoe, Travis, Macdonald, Whitney A., Reid, Hugh H., Clements, Craig S., Purcell, Anthony W., Kjer-Nielsen, Lars, Miles, John J., Burrows, Scott R., McCluskey, James, and Rossjohn, Jamie (2005) The CDR3 regions of an immunodominant T cell receptor dictate the 'energetic landscape' of peptide-MHC recognition. Nature Immunology, 6 (2). pp. 171-180.

Tynan, Fleur E., Burrows, Scott R., Buckle, Ashley M., Clements, Craig S., Borg, Natalie A., Miles, John J., Beddoe, Travis, Whisstock, James C., Wilce, Matthew C., Silins, Sharon L., Burrows, Jacqueline M., Kjer-Nielsen, Lars, Kostenko, Lyudmila, Purcell, Anthony W., McCluskey, James, and Rossjohn, Jamie (2005) T cell receptor recognition of a 'super-bulged' major histocompatibility complex class I–bound peptide. Nature Immunology, 6 (11). pp. 1114-1122.

Green, Kate J., Miles, John J., Tellam, Judy, van Zuylen, Wendy J. M., Connolly, Geoff, and Burrows, Scott R. (2004) Potent T cell response to a class I-binding 13-mer viral epitope and the influence of HLA micropolymorphism in controlling epitope length. European Journal of Immunology, 34 (9). pp. 2510-2519.

Tellam, Judy, Connolly, Geoff, Green, Katherine J., Miles, John J., Moss, Denis J., Burrows, Scott R., and Khanna, Rajiv (2004) Endogenous presentation of CD8+T cell epitopes from Epstein-Barr virus–encoded nuclear antigen 1. The Journal of Experimental Medicine, 199 (10). pp. 1421-1431.

Burrows, Scott R., Elkington, Rebecca A., Miles, John J., Green, Katherine J., Walker, Susan, Haryana, Sofia M., Moss, Denis J., Dunckley, Heather, Burrows, Jacqueline M., and Khanna, Rajiv (2003) Promiscuous CTL recognition of viral epitopes on multiple human leukocyte antigens: biological validation of the proposed HLA A24 supertype. Journal of Immunology, 171 (3). pp. 1407-1412.

Argaet, Victor P., Schmidt, Christopher W., Burrows, Scott R., Silins, Sharon L., Kurilla, Mike G., Doolan, Denise L., Suhrbier, Andreas, Moss, Denis J., Kieff, Elliot, Sculley, Tom B., and Misko, Ihor S. (1994) Dominant selection of an invariant T cell antigen receptor in response to persistent infection by Epstein-Barr virus. The Journal of Experimental Medicine, 180 (6). pp. 2335-2340.