Gomes, Giana Bastos, Hutson, Kate S., Domingos, Jose A., Infante Villamil, Sandra, Huerlimann, Roger, Miller, Terrence L., and Jerry, Dean (2019) Parasitic protozoan interactions with bacterial microbiome in a tropical fish farm. Aquaculture, 502. pp. 196-201.

Brazenor, Alexander K., Saunders, Richard J., Miller, Terrance L., and Hutson, Kate S. (2018) Morphological variation in the cosmopolitan fish parasite Neobenedenia girellae (Capsalidae: Monogenea). International Journal for Parasitology, 48 (2). pp. 125-134.

Miller, Terrence L., Barnett, Samantha, Seymour, Jamie E., Jenkins, Timothy P., McNamara, Marissa, and Adlard, Robert D. (2018) Biliary tract-infecting myxosporeans from estuarine and reef stonefish (Scorpaeniformes: Synanceiidae) off eastern Australia, with descriptions of Sphaeromyxa horrida n. sp. and Myxidium lapipiscis n. sp. (Myxosporea: Bivalvulida). Journal of Parasitology, 104 (3). pp. 254-261.

Brazenor, Alexander K.,, Bertozzi, Terry, Miller, Terrence L., Whittington, Ian D., and Hutson, Kate S. (2018) DNA profiling reveals Neobenedenia girellae as the primary culprit in global fisheries and aquaculture. Molecular Phylogenetics and Evolution, 129. pp. 130-137.

Barnett, Leonie J., and Miller, Terrence L. (2018) Host specificity and ecology of digenean parasites of nassariid gastropods in central queensland, australia, with comments on host-parasite associations of the Nassariidae. Yale Journal of Biology and Medicine, 91 (4). pp. 361-374.

Barnett, Leonie J., and Miller, Terrence L. (2018) Phenotypic plasticity of six unusual cercariae in nassariid gastropods and their relationships to the Acanthocolpidae and Brachycladiidae (Digenea). Parasitology International, 67 (2). pp. 225-232.

Miller, Terrence L., Cutmore, Scott C., and Cribb, Thomas H. (2018) Two species of Neometadena Hafeezullah & Siddiqi, 1970 (Digenea: Cryptogonimidae) from Moreton Bay, Australia, including the description of Neometadena paucispina n. sp. from Australian Lutjanidae. Systematic Parasitology, 95 (7). pp. 655-664.

Bastos Gomes, G., Jerry, D.R., Miller, T.L., and Hutson, K.S. (2017) Current status of parasitic ciliates Chilodonella spp. (Phyllopharyngea: Chilodonellidae) in freshwater fish aquaculture. Journal of Fish Diseases, 40 (5). pp. 703-715.

Bastos Gomes, Giana, Miller, Terrence L., Vaughan, David B., Jerry, Dean R., McCowan, Christina, Bradley, Tracey L., and Hutson, Kate S. (2017) Evidence of multiple species of Chilodonella (Protozoa, Ciliophora) infecting Australian farmed freshwater fishes. Veterinary Parasitology, 237. pp. 8-16.

Taylor-Brown, Alyce, Pillonel, Trestan, Bridle, Andrew, Qi, Weihong, Bachmann, Nathan L., Miller, Terrence L., Greub, Gilbert, Nowak, Barbara, Seth-Smith, Helena M.B., Vaughan, Lloyd, and Polkinghorne, Adam (2017) Culture-independent genomics of a novel chlamydial pathogen of fish provides new insight into host-specific adaptations utilized by these intracellular bacteria. Environmental Microbiology, 19 (5). pp. 1899-1913.

Bastos Gomes, Giana, Hutson, Kate S., Domingos, Jose A., Chung, Catherine, Hayward, Scott, Miller, Terrance L., and Jerry, Dean R. (2017) Use of environmental DNA (eDNA) and water quality data to predict protozoan parasites outbreaks in fish farms. Aquaculture, 479. pp. 467-473.

Blasco-Costa, Isabel, Cutmore, Scott C., Miller, Terrence L, and Nolan, Matthew J. (2016) Molecular approaches to trematode systematics: 'best practice' and implications for future study. Systematic Parasitology, 93 (3). pp. 295-306.

Nolan, Matthew J., Cantacessi, Cinzia, Cutmore, Scott C., Cribb, Thomas H., and Miller, Terrence L. (2016) High-intensity cardiac infections of Phthinomita heinigerae n. sp (Digenea: Aporocotylidae) in the orangelined cardinalfish, Taeniamia fucata (Cantor), off Heron Island on the Great Barrier Reef. Parasitology International, 65 (5, Part A). pp. 371-377.

Yong, R.Q-Y., Cutmore, S.C., Bray, R.A., Miller, T.L., Semarariana, I.W.Y., Palm, H.W., and Cribb, T.H. (2016) Three new species of blood flukes (Digenea: Aporocotylidae) infecting pufferfishes (Teleostei: Tetraodontidae) from off Bali, Indonesia. Parasitology International, 65 (5, Part A). pp. 432-443.

Yong, Russell Q.-Y., Cutmore, Scott C., Miller, Terrence L., Wee, Nicholas Q.-X., and Cribb, Thomas H. (2016) A complex of Cardicola Short, 1953 (Digenea: Aporocotylidae) species infecting the milkfish Chanos chanos Forsskål(Gonorynchiformes), with descriptions of two new species. Systematic Parasitology, 93 (9). pp. 831-846.

Chotnipat, Soranot, Miller, Terrence L., Knuckey, Richard M., and Hutson, Kate S. (2015) Molecular and morphological evidence for the widespread distribution of Laticola paralatesi infecting wild and farmed Lates calcarifer in Australia. Diseases of Aquatic Organisms, 113 (3). pp. 195-205.

Adlard, Robert D., Miller, Terrence L., and Smit, Nico J. (2015) The butterfly effect: parasite diversity, environment, and emerging disease in aquatic wildlife. Trends in Parasitology, 31 (4). pp. 160-166.

Trieu, Nancy, Cutmore, Scott C., Miller, Terrence L., and Cribb, Thomas H. (2015) A species pair of Bivesicula Yamaguti, 1934 (Trematoda: Bivesiculidae) in unrelated Great Barrier Reef fishes: implications for the basis of speciation in coral reef fish trematodes. Systematic Parasitology, 91 (3). pp. 231-239.

Cutmore, Scott C., Miller, Terrence L., Bray, Rodney A., and Cribb, Thomas H. (2014) A new species of Plectognathotrema Layman, 1930 (Trematoda: Zoogonidae) from an Australian monacanthid, with a molecular assessment of the phylogenetic position of the genus. Systematic Parasitology, 89 (3). pp. 237-246.

Shimazu, Takeshi, Cribb, Thomas H., Miller, Terrence L., Urabe, Misako, Van Ha, Nguyen, Thi Binh, Tran, and Shed'ko, Marina B. (2014) Revision of Isoparorchis Southwell, 1913 (Digenea, Hemiuroidea, Isoparorchiidae), parasites of the air bladder of freshwater catfishes: a molecular and morphological study. Bulletin of National Museum of Natural Science, Series A, 40 (1). pp. 15-51.

McNamara, M.K.A., Miller, T.L., and Cribb, T.H. (2014) Evidence for extensive cryptic speciation in trematodes of butterflyfishes (Chaetodontidae) of the tropical Indo-West Pacific. International Journal for Parasitology, 44 (1). pp. 37-48.

Nolan, Matthew J., Miller, Terrence L., Cutmore, Scott C., Cantacessi, Cinzia, and Cribb, Thomas H. (2014) Cardicola beveridgei n. sp. (Digenea: Aporocotylidae) from the mangrove jack, Lutjanus argentimaculatus (Perciformes: Lutjanidae), and C. bullardi n. sp. from the Australian spotted mackerel, Scomberomorus munroi (Perciformes: Scombridae), from the northern Great Barrier Reef. Parasitology International, 63 (5). pp. 735-745.

Cribb, Thomas H., Bott, Nathan J., Bray, Rodney A., McNamara, Marissa K.A., Miller, Terrence L., Nolan, Matthew J., and Cutmore, Scott C. (2014) Trematodes of the Great Barrier Reef, Australia: emerging patterns of diversity and richness in coral reef fishes. International Journal for Parasitology, 44 (12). pp. 929-939.

Barnett, Leonie J., Miller, Terrence L., and Cribb, Thomas H. (2014) A review of the currently recognised opecoelid cercariae, including the identification and emergence ecology of Cercaria capricornia XII (Digenea: Opecoelidae) from Nassarius olivaceus (Gastropoda: Nassariidae) in Central Queensland, Australia. Parasitology International, 63 (5). pp. 670-682.

Cribb, Thomas H., Miller, Terrence L., Bray, Rodney A., and Cutmore, Scott C. (2014) The sexual adult of Cercaria praecox Walker, 1971 (Digenea: Fellodistomidae), with the proposal of Oceroma n. g. Systematic Parasitology, 88 (1). pp. 1-10.

Miller, Terrence L., Small, Hamish J., Peemoeller, Bhae-Jin, Gibbs, David A., and Shields, Jeffrey D. (2013) Experimental infections of Orchitophrya stellarum (Scuticociliata) in American blue crabs (Callinectes sapidus) and fiddler crabs (Uca minax). Journal of Invertebrate Pathology, 114 (3). pp. 346-355.

Cantacessi, Cinzia, Seddon, Jennifer M., Miller, Terrence L., Leow, Chiuan Yee, Thomas, Laëtitia, Mason, Lyndel, Willis, Charlene, Walker, Giselle, Loukas, Alex, Gasser, Robin B., Jones, Malcolm K., and Hofmann, Andreas (2013) A genome-wide analysis of annexins from parasitic organisms and their vectors. Scientific Reports, 3. 2893. pp. 1-8.

Miller, Terrence L., and Cribb, Thomas H. (2013) Dramatic phenotypic plasticity within species of Siphomutabilus n. g. (Digenea: Cryptogonimidae) from Indo-Pacific caesionines (Perciformes: Lutjanidae). Systematic Parasitology, 86 (2). pp. 101-112.

Cutmore, Scott C., Miller, Terrence L., Curran, Stephen S., Bennett, Michael B., and Cribb, Thomas H. (2013) Phylogenetic relationships of the Gorgoderidae (Platyhelminthes: Trematoda), including the proposal of a new subfamily (Degeneriinae n. subfam.). Parasitology Research, 112 (8). pp. 3063-3074.

Miller, T.L., and Adlard, R.D. (2013) Unicapsula species (Myxosporea: Trilosporidae) of Australian marine fishes, including the description of Unicapsula andersenae n. sp. in five teleost families off Queensland, Australia. Parasitology Research, 112 (8). pp. 2945-2957.

Yong, R.Q-Y., Cutmore, S.C., Miller, T.L., Adlard, R.D., and Cribb, T.H. (2013) The ghost of parasites past: eggs of the blood fluke Cardicola chaetodontis (Aporocotylidae) trapped in the heart and gills of butterflyfishes (Perciformes: Chaetodontidae) of the Great Barrier Reef. Parasitology, 140 (9). pp. 1186-1194.

Bott, Nathan J., Miller, Terrence L., and Cribb, Thomas H. (2013) Bucephalidae (Platyhelminthes: Digenea) of Plectropomus (Serranidae: Epinephelinae) in the tropical Pacific. Parasitology Research, 112 (7). pp. 2561-2584.

Stride, M.C., Polkinghorne, A., Miller, T.L., Groff, J.M., LaPatra, S.E., and Nowak, B.F. (2013) Molecular characterization of "Candidatus Parilichlamydia carangidicola," a novel Chlamydia-like epitheliocystis agent in Yellowtail Kingfish, Seriola lalandi (Valenciennes), and the proposal of a new family, "Candidatus Parilichlamydiaceae" fam. nov. (Order Chlamydiales). Applied and Environmental Microbiology, 79 (5). pp. 1590-1597.

Stride, M.C., Polkinghorne, A., Miller, T.L., and Nowak, B.F. (2013) Molecular characterization of "Candidatus Similichlamydia latridicola" gen. nov., sp. nov. (Chlamydiales: "Candidatus Parilichlamydiaceae"), a novel Chlamydia-like epitheliocystis agent in the Striped Trumpeter, Latris lineata (Forster). Applied and Environmental Microbiology, 79 (16). pp. 4914-4920.