A chromosomelevel genome assembly of the Asian arowana, Scleropages formosus
Li, Jia, Bian, Chao, Hu, Yinchang, Mu, Xidong, Shen, Xueyan, Ravi, Vydianathan, Kuznetsova, Inna S., Sun, Ying, Xinxin, You, Qui, Ying, Zhang, Xinhui, Yu, Hui, Huang, Yu, Xu, Pao, Gu, Ruobo, Xu, Junmin, Orban, Laszlo, Venkatesh, Byrappa, and Shi, Qiong (2016) A chromosomelevel genome assembly of the Asian arowana, Scleropages formosus. Scientific Data, 3. 160105.
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Abstract
Asian arowana (Scleropages formosus), an ancient teleost belonging to the Order Osteoglossomorpha, has been a valuable ornamental fish with some varieties. However, its biological studies and breeding germplasm have been remarkably limited by the lack of a reference genome. To solve these problems, here we report high-quality genome sequences of three common varieties of Asian arowana (the golden, red and green arowana). We firstly generated a chromosome-level genome assembly of the golden arowana, on basis of the genetic linkage map constructed with the restriction site-associated DNA sequencing (RAD-seq). In addition, we obtained draft genome assemblies of the red and green varieties. Finally, we annotated 22,016, 21,256 and 21,524 protein-coding genes in the genome assemblies of golden, red and green varieties respectively. Our data were deposited in publicly accessible repositories to promote biological research and molecular breeding of Asian arowana.
| Item ID: | 64276 |
|---|---|
| Item Type: | Article (Research - C1) |
| ISSN: | 2052-4463 |
| Copyright Information: | This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article's CreativeCommons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce thematerial. To view a copy of this license, visit http://creativecommons.org/licenses/by/4. |
| Funders: | China Special Project on the Integration of Industry, Education and Research of Guangdong Province (CSP), National Science Inrastructure Platform of China (NSIPC), Agency for Science, Technology and Research, Singapore (A*STAR), China Shenzhen Science and Technology Program (CSSTP), Shenzhen Special Program for Industrial Development (SSPID), Temasek Life Sciences Laboratory of Singapore |
| Projects and Grants: | CSP No. 2013B09080001, NSIPC No. 2016DKA30470, A*Star No. 2014AA093501, CSSTP No. CXB201108250095A, SSPID No. JSGG20141020113728803 |
| Date Deposited: | 09 Sep 2020 00:10 |
| FoR Codes: | 31 BIOLOGICAL SCIENCES > 3105 Genetics > 310508 Genome structure and regulation @ 50% 31 BIOLOGICAL SCIENCES > 3105 Genetics > 310509 Genomics @ 50% |
| SEO Codes: | 83 ANIMAL PRODUCTION AND ANIMAL PRIMARY PRODUCTS > 8301 Fisheries - Aquaculture > 830102 Aquaculture Fin Fish (excl. Tuna) @ 100% |
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