A

Alhallaf, Rafid, Agha, Zainab, Miller, Catherine M., Robertson, Avril A.B., Sotillo-Gallego, Javier, Croese, John, Cooper, Matthew A., Masters, Seth L., Kupz, Andreas, Smith, Nicholas C., Loukas, Alex, and Giacomin, Paul R. (2018) The NLRP3 inflammasome suppresses protective immunity to gastrointestinal helminth infection. Cell Reports, 23 (4). pp. 1085-1098.

Astudillo-Garcia, Carmen, Bell, James J., Webster, Nicole S., Glasl, Bettina, Jompa, Jamaluddin, Montoya, Jose M., and Taylor, Michael W. (2017) Evaluating the core microbiota in complex communities: a systematic investigation. Environmental Microbiology, 19 (4). pp. 1450-1462.

Aguilar, Catalina, Raina, Jean-Baptiste, Motti, Cherie A., Foret, Sylvain, Hayward, David C., Lapeyre, Bruno, Bourne, David G., and Miller, David J. (2017) Transcriptomic analysis of the response of Acropora millepora to hypo-osmotic stress provides insights into DMSP biosynthesis by corals. BMC Genomics, 18. 612.

B

Bachem, Annabell, Makhlouf, Christina, Binger, Katrina J., de Souza, David P., Tull, Deidra, Hochheiser, Katharina, Whitney, Paul G., Fernandez-Ruiz, Daniel, Dähling, Sabrina, Kastenmüller, Wolfgang, Jönsson, Johanna, Gressier, Elise, Lew, Andrew M., Perdomo, Carolina, Kupz, Andreas, Figgett, William, Mackay, Fabienne, Oleshansky, Moshe, Russ, Brendan E., Parish, Ian A., Kallies, Axel, McConville, Malcolm J., Turner, Stephen J., Gebhardt, Thomas, and Bedoui, Sammy (2019) Microbiota-derived short-chain fatty acids promote the memory potential of antigen-activated CD8+ T cells. Immunity, 51. pp. 285-297.

Biscornet, Leon, Dellagi, Koussay, Pagès, Frédéric, Bibi, Jastin, Comarmond, Jeanine de, Mélade, Julien, Govinden, Graham, Tirant, Maria, Gomard, Yann, Guernier, Vanina, Lagadec, Erwan, Mélanie, Jimmy, Rocamora, Gérard, Le Minter, Gildas, Jaubert, Julien, Mavingui, Patrick, and Tortosa, Pablo (2017) Human leptospirosis in Seychelles: a prospective study confirms the heavy burden of the disease but suggests that rats are not the main reservoir. PLoS Neglected Tropical Diseases, 11 (8). e0005831. pp. 1-22.

Buerger, Patrick, Alvarez-Roa, Carlos, Weynberg, Karen D., Baekelandt, Sebastien, and van Oppen, Madeleine J.H. (2016) Genetic, morphological and growth characterisation of a new Roseofilum strain (Oscillatoriales, Cyanobacteria) associated with coral black band disease. PeerJ, 4. pp. 1-19.

Bosch, Thomas C.G., and Miller, David J. (2016) The Holobiont Imperative: perspectives from early emerging animals. Springer, Vienna, Austria.

C

Chen, Carla C.M., Bourne, David G., Drovandi, Christopher C., Mengersen, Kerrie, Willis, Bette L., Caley, M. Julian, and Sato, Yui (2017) Modelling environmental drivers of black band disease outbreaks in populations of foliose corals in the genus Montipora. PeerJ, 5. e3438.

E

Epstein, Hannah E., Smith, Hillary A., Cantin, Neal E., Mocellin, Veronique J. L., Torda, Gergely, and van Oppen, Madeleine J. H. (2019) Temporal variation in the microbiome of Acropora coral species does not reflect seasonality. Frontiers In Microbiology, 10. 1775.

G

Gulizia, Alexandra M., Brodie, Eve, Daumuller, Renee, Bloom, Sarah B., Corbett, Tayla, Santana, Marina M.F., Motti, Cherie A., and Vamvounis, George (2022) Evaluating the Effect of Chemical Digestion Treatments on Polystyrene Microplastics: Recommended Updates to Chemical Digestion Protocols. Macromolecular Chemistry and Physics, 223. 2100485.

Glasl, Bettina, Bourne, David G., Frade, Pedro R., and Webster, Nicole S. (2017) Establishing microbial baselines to identify indicators of coral reef health. Microbiology Australia, 39 (1). pp. 42-46.

Glasl, Bettina, Webster, Nicole S., and Bourne, David G. (2017) Microbial indicators as a diagnostic tool for assessing water quality and climate stress in coral reef ecosystems. Marine Biology, 164. 91.

Glasl, Bettina, Bongaerts, Pim, Elisabeth, Nathalie H., Hoegh-Guldberg, Ove, Herndl, Gerhard J., and Frade, Pedro R. (2017) Microbiome variation in corals with distinct depth distribution ranges across a shallow-mesophotic gradient (15-85 m). Coral Reefs, 36 (2). pp. 447-452.

H

Hussain-Yusuf, Hazizul, Stenos, John, Vincent, Gemma, Shima, Amy, Abell, Sandra, Preece, Noel D., Tadepalli, Mythili, Hii, Sze Fui, Bowie, Naomi, Mitram, Kate, and Graves, Stephen (2020) Screening for rickettsia, coxiella and borrelia species in ticks from Queensland, Australia. Pathogens, 9 (12). 1016.

K

Kumar, Ravinder, and Kumar, Pradeep (2017) Future Microbial Applications for Bioenergy Production: A Perspective. Frontiers In Microbiology, 8. 450.

L

Lim, Jin Yan, Barnett, Timothy C., Bastiani, Michele, McMahon, Kerrie-Ann, Ferguson, Charles, Webb, Richard I., Parton, Robert G., and Walker, Mark J. (2017) Caveolin 1 restricts Group A Streptococcus invasion of nonphagocytic host cells. Cellular Microbiology, 19 (12). e12772.

Lamb, Joleah B., van de Water, Jeroen A.J.M., Bourne, David G., Altier, Craig, Hein, Margaux Y., Fiorenza, Evan A., Abu, Nur, Jompa, Jamaluddin, and Harvell, C. Drew (2017) Seagrass ecosystems reduce exposure to bacterial pathogens of humans, fishes, and invertebrates. Science, 355 (6326). pp. 731-733.

M

Mera, Hanaka, and Bourne, David G. (2018) Disentangling causation: complex roles of coral-associated microorganisms in disease. Environmental Microbiology, 20 (2). pp. 431-449.

Muruganandah, Visai, Sathkumara, Harindra D., Navarro, Severine, and Kupz, Andreas (2018) A systematic review: the role of resident memory T cells in infectious diseases and their relevance for vaccine development. Frontiers in Immunology, 9. 1574. pp. 1-21.

Morrow, Kathleen M., Bromhall, Katrina, Motti, Cherie A., Munn, Colin B., and Bourne, David G. (2017) Allelochemicals produced by brown macroalgae of the Lobophora Genus are active against coral larvae and associated bacteria, supporting pathogenic shifts to vibrio dominance. Applied and Environmental Microbiology, 83 (1). pp. 1-19.

Marcelino, Vanessa Rossetto, Morrow, Kathleen M., van Oppen, Madeleine J.H., Bourne, David G., and Verbruggen, Heroen (2017) Diversity and stability of coral endolithic microbial communities at a naturally high p CO2 reef. Molecular Ecology, 26 (19). pp. 5344-5357.

N

Neave, Matthew J., Rachmawati, Rita, Xun, Liping, Michell, Craig T., Bourne, David G., Apprill, Amy, and Voolstra, Christian R. (2017) Differential specificity between closely related corals and abundant Endozoicomonas endosymbionts across global scales. ISME Journal: multidisciplinary journal of microbial ecology, 11 (1). pp. 186-200.

P

Peixoto, Raquel S., Rosado, Phillipe M., de Assis Leite, Deborah Catharine, Rosado, Alexandre S., and Bourne, David G. (2017) Beneficial microorganisms for corals (BMC): proposed mechanisms for coral health and resilience. Frontiers in Microbiology, 8. 341.

Pollock, F. Joseph, Katz, Sefano M., van de Water, Jeroen A.J.M., Davies, Sarah W., Hein, Margaux, Torda, Gergely, Matz, Mikhail V., Beltran, Victor H., Buerger, Patrick, Puill-Stephan, Eneour, Abrego, David, Bourne, David G., and Willis, Bette L. (2017) Coral larvae for restoration and research: a large-scale method for rearing Acropora millepora larvae, inducing settlement, and establishing symbiosis. PeerJ, 5. e3732.

R

Rosado, Phillipe M., Leite, Deborah C.A., Duarte, Gustavo A.S., Chaloub, Ricardo M., Jospin, Guillaume, Nunes da Rocha, Ulisses, Saraiva, João P., Dini-Andreote, Francisco, Eisen, Jonathan A., Bourne, David G., and Peixoto, Raquel S. (2019) Marine probiotics: increasing coral resistance to bleaching through microbiome manipulation. ISME Journal: multidisciplinary journal of microbial ecology, 13. pp. 921-936.

Raina, Jean-Baptiste, Clode, Peta L., Cheong, Soshan, Bougoure, Jeremy, Kilburn, Matt R., Reeder, Anthony, Forêt, Sylvain, Stat, Michael, Beltran, Victor, Thomas-Hall, Peter, Tapiolas, Dianne, Motti, Cherie M., Gong, Bill, Pernice, Mathieu, Marjo, Christopher E., Seymour, Justin R., Willis, Bette L., and Bourne, David G. (2017) Subcellular tracking reveals the location of dimethylsulfoniopropionate in microalgae and visualises its uptake by marine bacteria. eLife, 6.

S

Sathkumara, Harindra D., Pai, Saparna, de Jesús Aceves-Sánchez, Michel, Ketheesan, Natkunam, Flores-Valdez, Mario Alberto, and Kupz, Andreas (2019) BCG vaccination prevents reactivation of latent lymphatic murine tuberculosis independently of CD4+ T cells. Frontiers in Immunology, 10. 532.

Sato, Yui, Bell, Sara C., Nichols, Cassandra, Fry, Kent, Menéndez, Patricia, and Bourne, David G. (2018) Early-phase dynamics in coral recovery following cyclone disturbance on the inshore Great Barrier Reef, Australia. Coral Reefs, 37 (2). pp. 431-443.

Smith, Hillary, Epstein, Hannah, and Torda, Gergely (2017) The molecular basis of differential morphology and bleaching thresholds in two morphs of the coral Pocillopora acuta. Scientific Reports, 7 (1). 10066.

Sato, Yui, Ling, Edmund Y.S., Turaev, Dmitrij, Laffy, Patrick, Weynberg, Karen D., Rattei, Thomas, Willis, Bette L., and Bourne, David G. (2017) Unraveling the microbial processes of black band disease in corals through integrated genomics. Scientific Reports, 7. 40455.

V

von Ammon, Ulla, Averink, Tessa, Kumanan, Karthiga, Brosnahan, Cara L., Pochon, Xavier, Hutson, Kate S., and Symonds, Jane E. (2022) An Efficient Tetraplex Surveillance Tool for Salmonid Pathogens. Frontiers In Microbiology, 13. 885585.

van de Water, Jeroen A.J.M., Chaib de Mares, Maryam, Dixon, Groves B., Raina, Jean-Baptiste, Willis, Bette L., Bourne, David G., and van Oppen, Madeleine J.H. (2018) Antimicrobial and stress responses to increased temperature and bacterial pathogen challenge in the holobiont of a reef-building coral. Molecular Ecology, 27 (4). pp. 1065-1080.