C

Chng, Lena, Holt, Deborah C., Field, Matt, Francis, Joshua R., Tilakaratne, Dev, Dekkers, Milou H., Robinson, Greg, Mounsey, Kate, Pavlos, Rebecca, Bowen, Asha C., Fischer, Katja, Papenfuss, Anthony T., Gasser, Robin B., Korhonen, Pasi K., Currie, Bart J., McCarthy, James S., and Pasay, Cielo (2021) Molecular diagnosis of scabies using a novel probe-based polymerase chain reaction assay targeting high-copy number repetitive sequences in the Sarcoptes scabiei genome. PLoS Neglected Tropical Diseases, 15 (2). e0009149.

D

Deacy, Anthony M., Gan, Samuel Ken-En, and Derrick, Jeremy P. (2021) Superantigen recognition and interactions: functions, mechanisms and applications. Frontiers in Immunology, 12. 731845. pp. 3765-6781.

F

Field, Matt A. (2022) Bioinformatic Challenges Detecting Genetic Variation in Precision Medicine Programs. Frontiers in Medicine, 9. 806696.

H

Hamzeh, Abdul Rezzak, Andrews, T. Daniel, and Field, Matt A. (2021) Detecting Causal Variants in Mendelian Disorders Using Whole-Genome Sequencing. In: Noam, Shomron, (ed.) Deep Sequencing Data Analysis. Methods in Molecular Biology, 2243 . Humana Press, New York, NY, USA, pp. 1-25.

K

Karl, Stephan, White, Michael T., Milne, George J., Gurarie, David, Hay, Simon I., Barry, Alyssa E., Felger, Ingrid, and Mueller, Ivo (2016) Spatial effects on the multiplicity of Plasmodium falciparum infections. PLoS ONE, 11 (10). e0164054.

Knoll, Susanne, Fürst, Katharina, Kowtharapu, Bhavani, Schmitz, Ulf, Marquardt, Stephan, Wolkenhauer, Olaf, Martin, Hubert, and Pützer, Brigitte (2014) E2F1 induces miR-224/452 expression to drive EMT through TXNIP downregulation. EMBO Reports, 15. pp. 1315-1329.

M

McConnell, Hannah, Andrews, T. Daniel, and Field, Matt A. (2021) Efficacy of computational predictions of the functional effect of idiosyncratic pharmacogenetic variants. PeerJ, 9. e11774.

Marthick, James R., Raspin, Kelsie, Foley, Georgea R., Blackburn, Nicholas B., Banks, Annette, Donovan, Shaun, Malley, Roslyn C., Field, Matthew A., Stanford, Janet L., Ostrander, Elaine A., FitzGerald, Liesel M., and Dickinson, Joanne L. (2021) Massively parallel sequencing in hereditary prostate cancer families reveals a rare risk variant in the DNA repair gene, RAD51C. European Journal of Cancer, 159. pp. 52-55.

N

Naderi-Meshkin, Hojjat, Lai, Xin, Amirkhah, Raheleh, Vera, Julio, Rasko, John E.J., and Schmitz, Ulf (2019) Exosomal lncRNAs and cancer: Connecting the missing links. Bioinformatics, 35 (2). pp. 352-360.

P

Pearson, Mark S., Tedla, Bemnet A., Mekonnen, Gebeyaw G., Proietti, Carla, Becker, Luke, Nakajima, Rie, Jasinskas, Al, Doolan, Denise L., Amoah, Abena S., Knopp, Stefanie, Rollinson, David, Ali, Said M., Kabole, Fatma, Hokke, Cornelis H., Adegnika, Akim A., Field, Matt A., van Dam, Govert, Corstjens, Paul L.A.M., Mduluza, Takafira, Mutapi, Francisca, Oeuvray, Claude, Greco, Beatrice, Chaiyadet, Sujittra, Laha, Thewarach, Cai, Pengfei, McManus, Donald P., Bottazzi, Maria Elena, Felgner, Philip L., Sotillo, Javier, and Loukas, Alex (2021) Immunomics-guided discovery of serum and urine antibodies for diagnosing urogenital schistosomiasis: a biomarker identification study. The Lancet Microbe, 2 (11). e617-e626.

R

Raspin, Kelsie, FitzGerald, Liesel M., Marthick, James R., Field, Matt A., Malley, Roslyn C., Banks, Annette, Donovan, Shaun, Thomson, Russell J., Foley, Georgea R., Stanford, Janet L., and Dickinson, Joanne L. (2021) A rare variant in EZH2 is associated with prostate cancer risk. International Journal of Cancer, 149 (5). pp. 1089-1099.

S

Sriwichai, Patchara, Karl, Stephan, Samung, Yudthana, Kiattibuti, Kirakorn, Sirichaisinthop, Jeeraphat, Mueller, Ivo, Cui, Liwang, and Sattabongkot, Jetsumon (2017) Imported Plasmodium falciparum and locally transmitted Plasmodium vivax: cross-border malaria transmission scenario in northwestern Thailand. Malaria Journal, 16. 258.

Sharifpour, Mohammad Farouq, Mardani, Karim, and Ownagh, Abdulghaffar (2016) Molecular identification and phylogenetic analysis of Lactobacillus and Bifidobacterium spp. isolated from gut of honeybees (Apis mellifera) from West Azerbaijan, Iran. Veterinary Research Forum, 7 (4). pp. 287-294.

Schmitz, Ulf, and Wolkenhauer, Olaf (2016) Systems medicine. Methods in Molecular Biology, 1386 . Springer, New York, USA.

T

Thavaneswaran, Subotheni, Kansara, Maya, Lin, Frank, Espinoza, David, Grady, John P., Lee, Chee Khoon, Ballinger, Mandy L., Sebastian, Lucille, Corpuz, Theresa, Qiu, Min Ru, Mundra, Piyushkumar, Bailey, Charles G., Schmitz, Ulf, Simes, John, Joshua, Anthony M., and Thomas, David M. (2023) A signal-seeking Phase 2 study of olaparib and durvalumab in advanced solid cancers with homologous recombination repair gene alterations. British Journal of Cancer, 129. pp. 475-485.

Taherzadeh, Ghazaleh, Dehzangi, Abdollah, Golchin, Maryam, Zhou, Yaoqi, and Campbell, Matthew P. (2019) SPRINT-Gly: predicting N- and O-linked glycosylation sites of human and mouse proteins by using sequence and predicted structural properties. Bioinformatics, 35 (20). pp. 4140-4146.

V

Vanichkina, Darya P., Schmitz, Ulf, Wong, Justin J.-L., and Rasko, John E.J. (2018) Challenges in defining the role of intron retention in normal biology and disease. Seminars in Cell and Developmental Biology, 75. pp. 40-49.

W

Wong, Justin J.-L., Au, Amy Y.M., Gao, Dada, Pinello, Natalia, Kwok, Chau-To, Thoeng, Annora, Lau, Katherine A., Gordon, Jane E.A., Schmitz, Ulf, Feng, Yue, Nguyen, Trung V., Middleton, Robert, Bailey, Charles G., Holst, Jeff, Rasko, John E.J., and Ritchie, William (2016) RBM3 regulates temperature sensitive miR-142-5p and miR-143 (thermomiRs), which target immune genes and control fever. Nucleic Acids Research, 44 (6). pp. 2888-2897.

White, Michael T., Shirreff, George, Karl, Stephan, Ghani, Azra C., and Mueller, Ivo (2016) Variation in relapse frequency and the transmission potential of Plasmodium vivax malaria. Proceedings of the Royal Society of London Series B, Biological Sciences, 283 (1827). 20160048.