Panchal, Sunil K., Ghattamaneni, Naga K.R., Magnusson, Marie, Cole, Andrew, Roberts, David, Neveux, Nicolas, Brown, Lindsay A., and Paul, Nicholas (2022) Freshwater Macroalgae, Oedogonium, Grown in Wastewater Reduce Diet-Induced Metabolic Syndrome in Rats. International Journal of Molecular Sciences, 23 (22). 13811.

Vucko, Matthew J., de Nys, Rocky, and Cole, Andrew J. (2021) Plant growth-promoting properties of extracts produced by fermenting the freshwater macroalga, Oedogonium intermedium. Algal Research, 58. 102435.

Nørskov, Natalja P., Bruhn, Annette, Cole, Andrew, and Nielsen, Mette Olaf (2021) Targeted and untargeted metabolic profiling to discover bioactive compounds in seaweeds and hemp using gas and liquid chromatography-mass spectrometry. Metabolites, 11 (5). 259.

Walker, Craig, Cole, Andrew, Antunes, Elsa, and Sheehan, Madoc (2020) Equilibrium moisture and drying kinetics modelling of macroalgae species Ulva ohnoi and Oedogonium intermedium. Clean Technologies, 2 (2). pp. 225-239.

Praeger, Christina, Vucko, Matthew J., McKinna, Lachlan, de Nys, Rocky, and Cole, Andrew (2020) Estimating the biomass density of macroalgae in land-based cultivation systems using spectral reflectance imagery. Algal Research, 50. 102009.

Valero-Rodriguez, J.M., Swearer, S.E., Dempster, T., de Nys, R., and Cole, A.J. (2020) Evaluating the performance of freshwater macroalgae in the bioremediation of nutrient-enriched water in temperate environments. Journal of Applied Phycology, 32. pp. 641-652.

Praeger, Christina, Vucko, Matthew J., de Nys, Rocky, and Cole, Andrew (2019) Maximising the productivity of the attached cultivation of Ulva tepida in land-based systems. Algal Research, 40. 101507.

Hua, Katheline, Cobcroft, Jennifer M., Cole, Andrew, Condon, Kelly, Jerry, Dean R., Mangott, Arnold, Praeger, Christina, Vucko, Matthew J., Zeng, Chaoshu, Zenger, Kyall, and Strugnell, Jan M. (2019) The future of aquatic protein: implications for protein sources in aquaculture diets. One Earth, 1 (3). pp. 316-329.

Cole, Andrew, Praeger, Christina, Mannering, Thomas, de Nys, Rocky, and Magnusson, Marie (2018) Hot and bright: thermal and light environments for the culture of Oedogonium intermedium and the geographical limits for large-scale cultivation in Australia. Algal Research, 34 (2018). pp. 209-216.

Cole, Andrew J., Paul, Nicholas, De Nys, Rocky, and Roberts, David A. (2017) Good for sewage treatment and good for agriculture: algal based compost and biochar. Journal of Environmental Management, 200. pp. 105-113.

Roberts, David A., Cole, Andrew J., Whelan, Anna, de Nys, Rocky, and Paul, Nicholas A. (2017) Slow pyrolysis enhances the recovery and reuse of phosphorus and reduces metal leaching from biosolids. Waste Management, 64. pp. 133-139.

Cole, Andrew J., Vucko, Matthew J., and de Nys, Rocky (2017) A comparative assessment on how molasses and CO2 gas prevent carbon limitation in the large-scale culture of freshwater macroalgae. Algal Research, 27. pp. 215-222.

Vucko, Matthew J., Cole, Andrew J., Moorhead, Jonathan A., Pit, Josiah, and de Nys, Rocky (2017) The freshwater macroalga Oedogonium intermedium can meet the nutritional requirements of the herbivorous fish Ancistrus cirrhosus. Algal Research-biomass Biofuels And Bioproducts, 27. pp. 21-31.

Lawton, Rebecca J., Cole, Andrew J., Roberts, David A., Paul, Nicholas A., and de Nys, Rocky (2017) The industrial ecology of freshwater macroalgae for biomass applications. Algal Research, 24 (B). pp. 486-491.

Cole, Andrew, Dinburg, Yakov, Haynes, Brian S., He, Yaya, Herskowitz, Moti, Jazrawi, Christopher, Landau, Miron, Liang, Xiao, Magnusson, Marie, Maschmeyer, Thomas, Masters, Anthony F., Meiri, Nora, Neveux, Nicolas, de Nys, Rocky, Paul, Nicholas, Rabaev, Moshe, Vidruk-Nehemya, Roxana, and Yuen, Alexander K.L. (2016) From macroalgae to liquid fuel via waste-water remediation, hydrothermal upgrading, carbon dioxide hydrogenation and hydrotreating. Energy & Environmental Science, 9 (5). pp. 1828-1840.

Cole, Andrew J., Neveux, Nicolas, Whelan, Anna, Morton, Jeff, Vis, Mark, de Nys, Rocky, and Paul, Nicholas A. (2016) Adding value to the treatment of municipal wastewater through the intensive production of freshwater macroalgae. Algal Research, 20. pp. 100-109.

He, Yaya, Liang, Xiao, Jazrawi, Christopher, Montoya, Alejandro, Yuen, Alexander, Cole, Andrew J., Neveux, Nicolas, Paul, Nicholas A., de Nys, Rocky, Maschmeyer, Thomas, and Haynes, Brian S. (2016) Continuous hydrothermal liquefaction of macroalgae in the presence of organic co-solvents. Algal Research, 17. pp. 185-195.

Zhu, Youjian, Piotrowska, Patrycja, van Eyk, Philip J., Bostrom, Dan, Wu, Xuehong, Boman, Christoffer, Brostrom, Markus, Zhang, Jun, Kwong, Chi Wai, Wang, Dingbiao, Cole, Andrew J., de Nys, Rocky, Gentili, Francesco G., and Ashman, Peter J. (2016) Fluidized bed co-gasification of algae and wood pellets: gas yields and bed agglomeration analysis. Energy and Fuels, 30 (3). pp. 1800-1809.

Cole, Andrew J., Roberts, David A., Garside, Alan L., de Nys, Rocky, and Paul, Nicholas A. (2016) Seaweed compost for agricultural crop production. Journal of Applied Phycology, 28 (1). pp. 629-642.

Cole, Andrew J., De Nys, Rocky, and Paul, Nicholas A. (2015) Biorecovery of nutrient waste as protein in freshwater macroalgae. Algal Research, 7 (2015). pp. 58-65.

Cole, Andrew J., Angell, Alex R., De Nys, Rocky, and Paul, Nicholas A. (2015) Cyclical changes in biomass productivity and amino acid content of freshwater macroalgae following nitrogen manipulation. Algal Research, 12. pp. 477-486.

Roberts, David A., Cole, Andrew J., Paul, Nicholas A., and De Nys, Rocky (2015) Algal biochar enhances the re-vegetation of stockpiled mine soils with native grass. Journal of Environmental Management, 161. pp. 173-180.

Roberts, David A., Paul, Nicholas A., Cole, Andrew J., and De Nys, Rocky (2015) From waste water treatment to land management: conversion of aquatic biomass to biochar for soil amelioration and the fortification of crops with essential trace elements. Journal of Environmental Management, 157. pp. 60-68.

Zhu, Youjian, Piotrowska, Patrycja, Van Eyk, Philip J., Bostrom, Dan, Kwong, Chi Wai, Wang, Dingbiao, Cole, Andrew, de Nys, Rocky, Gentili, Francesco G., and Ashman, Peter J. (2015) Cogasification of Australian brown coal with algae in a fluidized bed reactor. Energy & Fuels, 29 (3). pp. 1686-1700.

Lane, Daniel J., van Eyk, Philip J., de Nys, Rocky, Roberts, David A., Cole, Andrew J., and Ashman, Peter J. (2015) Mobilisation of trace elements during thermal conversion of algae cultivated in ash dam water. Biomass & Bioenergy, 83. pp. 183-195.

Walker, Craig, Cole, Andrew, and Sheehan, Madoc (2015) Modelling of thin layer drying of macroalgae. In: Proceedings of the 16th Asian Pacific Confederation of Chemical Congress. 3134753. From: APCChE 2015: 16th Asian Pacific Confederation of Chemical Congress, 27 September - 1 October 2015, Melbourne, VIC, Australia.

Lane, Daniel J., van Eyk, Philip J., Ashman, Peter J., Kwong, Chi W., de Nys, Rocky, Roberts, David A., Cole, Andrew J., and Lewis, David M. (2015) Release of Cl, S, P, K, and Na during thermal conversion of algal biomass. Energy & Fuels, 29 (4). pp. 2542-2554.

Cole, Andrew J., Mata, Leonardo, Paul, Nicholas A., and De Nys, Rocky (2014) Using CO₂ to enhance carbon capture and biomass applications of freshwater macroalgae. GCB Bioenergy, 6. pp. 637-645.

Cole, Andrew J., de Nys, Rocky, and Paul, Nicholas A. (2014) Removing constraints on the biomass production of freshwater macroalgae by manipulating water exchange to manage nutrient flux. PLoS ONE, 9 (7). e101284. pp. 1-9.

Cole, Andrew J., and Pratchett, Morgan S. (2014) Diversity in diet and feeding behaviour of butterflyfishes: reliance on reef corals versus reef habitats. In: Pratchett, Morgan S., Berumen, Michael L., and Kapoor, B.G., (eds.) Biology of Butterflyfishes. CRC Press, Boca Raton, FL, USA, pp. 107-139.

Cole, A.J., Lawton, R.J., Pisapia, C., and Pratchett, M.S. (2014) The effects of coral bleaching on settlement preferences and growth of juvenile butterflyfishes. Marine Environmental Research, 98. pp. 106-110.

Pratchett, M.S., Graham, N.A.J., and Cole, A.J. (2013) Specialist corallivores dominate butterflyfish assemblages in coral-dominated reef habitats. Journal of Fish Biology, 82 (4). pp. 1177-1191.

Pratchett, Morgan S., Bay, Line K., Coker, Darren J., Cole, Andrew J., and Lawton, Rebecca J. (2012) Effects of coral bleaching on coral habitats and associated fishes. In: Lunney, Daniel, and Hutchings, Pat, (eds.) Wildlife and Climate Change: towards robust conservation strategies for Australian fauna. RZS Forum Series . Royal Zoological Society New South Wales, Sydney, NSW, pp. 59-67.

Lawton, Rebecca J., Cole, Andrew J., Berumen, Michael L., and Pratchett, Morgan S. (2012) Geographic variation in resource use by specialist versus generalist butterflyfishes. Ecography, 35 (6). pp. 566-576.

Cole, Andrew J., Lawton, Rebecca J., Wilson, Shaun K., and Pratchett, Morgan S. (2012) Consumption of tabular acroporid corals by reef fishes: a comparison with plant–herbivore interactions. Functional Ecology, 26 (2). pp. 307-316.

Pisapia, Chiara, Cole, Andrew J., and Pratchett, Morgan S. (2012) Changing feeding preferences of butterflyfishes following coral bleaching. In: Proceedings of the 12th International Coral Reef Symposium. 13C_2. pp. 1-5. From: 12th International Coral Reef Symposium, 9-13 July 2012, Cairns, QLD, Australia.

Frisch, Ashley J., Cole, Andrew J., Hobbs, Jean-Paul A., Rizzari, Justin R., and Munkres, Katherine P. (2012) Effects of spearfishing on reef fish populations in a multi-use conservation area. PLoS ONE, 7 (12). e51938. pp. 1-11.

Cole, A.J., Lawton, R.J., Pratchett, M.S., and Wilson, S.K. (2011) Chronic coral consumption by butterflyfishes. Coral Reefs, 30 (1). pp. 85-93.

Cole, A.J., and Pratchett, M.S. (2011) Inter-specific variation in susceptibility to grazing among common reef corals. Marine Ecology Progress Series, 422. pp. 155-164.

Cole, A.J., and Pratchett, M.S. (2011) Effects of juvenile coral-feeding butterflyfishes on host corals. Coral Reefs, 30 (3). pp. 623-630.

Chong-Seng, K.M., Cole, A.J., Pratchett, M.S., and Willis, B.L. (2011) Selective feeding by coral reef fishes on coral lesions associated with brown band and black band disease. Coral Reefs, 30 (2). pp. 473-481.

Cole, Andrew (2011) Energetic costs of chronic fish predation on reef-building corals. PhD thesis, James Cook University.

Cole, A.J. (2010) Cleaning to corallivory: ontogenetic changes in feeding behaviour of tubelip wrasse. Coral Reefs, 29 (1). pp. 125-129.

Cole, A.J, Pratchett, M.S., and Jones, G.P. (2010) Corallivory in tubelip wrasses: diet, feeding and trophic importance. Journal of Fish Biology, 76 (4). pp. 818-835.

Cole, Andrew J, Chong-Seng, Karen, Pratchett, Morgan S., and Jones, Geoffrey P. (2009) Coral-feeding fishes slow progression of black-band disease. Coral Reefs, 28 (4). p. 965.

Cole, A.J., Pratchett, M.S., and Jones, G.P. (2009) Effects of coral bleaching on the feeding response of two species of coral-feeding fish. Journal of Experimental Marine Biology and Ecology, 373. pp. 11-15.

Cole, A.J., Pratchett, M.S., and Jones, G.P. (2009) Coral-feeding wrasse scars massive Porites colonies. Coral Reefs, 28 (1). p. 207.

Pratchett, M.S., Baird, A.H., McCowan, D.M., Coker, D.J., Cole, A.J., and Wilson, S.K. (2009) Protracted declines in coral cover and fish abundance following climate-induced coral bleaching on the Great Barrier Reef. In: Proceedings of the 11th Coral Reef Symposium. 1042- 1046. From: 11th International Coral Reef Symposium, 7 July - 11 July 2008, Fort Lauderdale, Florida, USA.

Cole, Andrew J., Pratchett, Morgan S., and Jones, Geoffrey P. (2008) Diversity and functional importance of coral-feeding fishes on tropical coral reefs. Fish and Fisheries, 9. pp. 286-307.