Pratchett, Morgan S., Caballes, Ciemon F., Hobbs, Jean-Paul A., DiBattista, Joseph D., Bergseth, Brock, Waldie, Peter, Champion, Curtis, Mc Cormack, Samuel P., and Hoey, Andrew S. (2023) Variation in the Physiological Condition of Common Coral Trout (Plectropomus leopardus) Unrelated to Coral Cover on the Great Barrier Reef, Australia. Fishes, 8 (10). 497.

Hughes, Terry P., Kerry, James T., Álvarez-Noriega, Mariana, Alvarez-Romero, Jorge G., Anderson, Kristen D., Baird, Andrew, Babcock, Russell C., Beger, Maria, Bellwood, David, Berkelmans, Ray, Bridge, Tom C., Butler, Ian R., Byrne, Maria, Cantin, Neal E., Comeau, Steeve, Connolly, Sean, Cumming, Graeme S., Dalton, Steven J., Diaz-Pulido, Guillermo, Eakin, C. Mark, Figueira, Will F., Gilmour, James P., Harrison, Hugo B., Heron, Scott F., Hoey, Andrew S., Hobbs, Jean-Paul A., Hoogenboom, Mia O., Kennedy, Emma V., Kuo, Chao-Yang, Lough, Janice M., Lowe, Ryan J., Liu, Gang, McCulloch, Malcolm T., Malcolm, Hamish A., McWilliam, Michael J., Pandolfi, John M., Pears, Rachel J., Pratchett, Morgan S., Schoepf, Verena, Simpson, Tristan, Skirving, William J., Sommer, Brigitte, Torda, Gergely, Wachenfeld, David R., Willis, Bette L., and Wilson, Shaun (2017) Global warming and recurrent mass bleaching of corals. Nature, 543 (7645). pp. 373-377.

D'Anastasi, B.R., van Herwerden, L., Hobbs, J.A., Simpfendorfer, C.A., and Lukoschek, V. (2016) New range and habitat records for threatened Australian sea snakes raise challenges for conservation. Biological Conservation, 194. pp. 66-70.

Pratchett, Morgan S., Hoey, Andrew S., Wilson, Shaun K., Hobbs, Jean-Paul A., and Allen, Gerald R. (2016) Habitat-use and specialisation among coral reef damselfishes. In: Frédérich, Bruno, and Parmentier, Eric, (eds.) Biology of Damselfishes. Taylor & Francis, Boca Raton, FL, USA, pp. 84-121.

Frisch, Ashley J., Cameron, Darren S., Pratchett, Morgan S., Williamson, David H., Williams, Ashley J., Reynolds, Adam D., Hoey, Andrew S., Rizzari, Justin R., Evans, Louisa, Kerrigan, Brigid, Muldoon, Geoffrey, Welch, David, and Hobbs, Jean-Paul A. (2016) Key aspects of the biology, fisheries and management of Coral grouper. Reviews in Fish Biology and Fisheries, 26 (3). pp. 303-325.

Hoey, Andrew S., Howells, Emily, Johansen, Jacob L., Hobbs, Jean-Paul A., Messmer, Vanessa, Bradbury, Dominique M., Wilson, Shaun K., and Pratchett, Morgan S. (2016) Recent advances in understanding the effects of climate change on coral reefs. Diversity, 8 (2). 12. pp. 1-22.

Montanari, Stefano R., Hobbs, Jean-Paul A., Pratchett, Morgan S., and Van Herwerden, Lynne (2016) The importance of ecological and behavioural data in studies of hybridisation among marine fishes. Reviews in Fish Biology and Fisheries, 26 (2). pp. 181-198.

Coker, Darren J., Hoey, Andrew S., Wilson, Shaun K., Depczynski, Martial, Graham, Nicholas A.J., Hobbs, Jean-Paul A., Holmes, Thomas H., and Pratchett, Morgan S. (2015) Habitat selectivity and reliance on live corals for Indo-Pacific Hawkfishes (Family: Cirrhitidae). PLoS ONE, 10. e0138136.

van der Meer, M.H., Berumen, M.L., Hobbs, J.-P.A., and van Herwerden, L. (2015) Population connectivity and the effectiveness of marine protected areas to protect vulnerable, exploited and endemic coral reef fishes at an endemic hotspot. Coral Reefs, 34 (2). pp. 393-402.

Hobbs, Jean-Paul A., Coker, Darren J., Green, Peter T., James, David J., Humphreys, William F., McAllan, Ian A.W., Newman, Stephen J., Pratchett, Morgan S., Staeudle, Timo M., and Whiting, Scott D. (2014) An annotated bibliography of the research on marine organisms and environments at Christmas Island and the Cocos (Keeling) Islands. Raffles Bulletin of Zoology, Supplement No. 30. pp. 419-468.

Pratchett, Morgan S., Hoey, Andrew S., Cvitanovic, Christopher, Hobbs, Jean-Paul, and Fulton, Christopher J. (2014) Abundance, diversity, and feeding behavior of coral reef butterflyfishes at Lord Howe Island. Ecology and Evolution, 4 (18). pp. 3612-3625.

Montanari, Stefano R., Hobbs, Jean-Paul A., Pratchett, Morgan S., Bay, Line K., and Van Herwerden, Lynne (2014) Does genetic distance between parental species influence outcomes of hybridization among coral reef butterflyfishes? Molecular Ecology, 23 (11). pp. 2757-2770.

Hobbs, J.-P.A., Frisch, A.J., Mutz, S., and Ford, B.M. (2014) Evaluating the effectiveness of teeth and dorsal fin spines for non-lethal age estimation of a tropical reef fish, coral trout Plectropomus leopardus. Journal of Fish Biology, 84 (2). pp. 328-338.

Hobbs, Jean-Paul A., Newman, Stephen J., Mitsopoulos, Gabby E.A., Travers, Michael J., Skepper, Craig L., Gilligan, Justin J., Allen, Gerald R., Choat, Howard J., and Ayling, Anthony M. (2014) Checklist and new records of Christmas Island fishes: the influence of isolation, biogeography and habitat availability on species abundance and community composition. Raffles Bulletin of Zoology, Supplement No. 30. pp. 184-202.

Hobbs, Jean-Paul A., Newman, Stephen J., Mitsopoulos, Gabby E.A., Travers, Michael J., Skepper, Craig L., Gilligan, Justin J., Allen, Gerald R., Choat, Howard J., and Ayling, Anthony M. (2014) Fishes of the Cocos (Keeling) Islands: new records, community composition and biogeographic significance. Raffles Bulletin of Zoology: an international journal of Southeast Asian Zoology, Supplement 30. pp. 203-219.

Hobbs, Jean-Paul A., van Herwerden, Lynne, Pratchett, Morgan S., and Allen, Gerald R. (2014) Hybridisation among butterflyfishes. In: Pratchett , Morgan S., Berumen , Michael L., and Kapoor , B.G., (eds.) Biology of Butterflyfishes. CRC Press, Boca Raton, FL, USA, pp. 48-69.

Montanari, Stefano R., Gardner, Michael G., Hobbs, Jean-Paul A., Pratchett, Morgan S., Bay, Line K., and van Herwerden, Lynne (2013) Isolation and characterization of twenty microsatellite markers for the study of hybridization in butterflyfish of the genus Chaetodon. Conservation Genetics Resources, 5 (3). pp. 783-786.

Hobbs, Jean-Paul A., Frisch, Ashley J., Ford, Benjamin M., Thums, Michele, Saenz-Agudelo, Pablo, Furby, Kathryn A., and Berumen, Michael L. (2013) Taxonomic, spatial and temporal patterns of bleaching in anemones inhabited by anemonefishes. PLoS ONE, 8 (8). e70966. pp. 1-12.

van der Meer, Martin H., Gardner, Michael G., Berumen, Michael L., Hobbs, Jean-Paul A., and Van Herwerden, Lynne (2013) Identification of seventeen microsatellite loci for conservation genetic studies of the endemic wrasse Coris bulbifrons. Conservation Genetics Resources, 5 (2). pp. 363-366.

van der Meer, Martin H., Horne, John B., Gardner, Michael G., Hobbs, Jean-Paul A., Pratchett, Morgan, and van Herwerden, Lynne (2013) Limited contemporary gene flow and high self-replenishment drives peripheral isolation in an endemic coral reef fish. Ecology and Evolution, 3 (6). pp. 1653-1666.

Montanari, Stefano, Van Herwerden, Lynne, Pratchett, Morgan, Hobbs, Jean-Paul, and Fugedi, Anneli (2012) Reef fish hybridization: lessons learnt from butterflyfishes (genus Chaetodon). Ecology and Evolution, 2 (2). pp. 310-328.

Hobbs, Jean-Paul A., Jones, Geoffrey P., Munday, Philip L., Connolly, Sean R., and Srinivasan, Maya (2012) Biogeography and the structure of coral reef fish communities on isolated islands. Journal of Biogeography, 39 (1). pp. 130-139.

Frisch, Ashley J., and Hobbs, Jean-Paul A. (2012) Demography, fishery yield and potential management strategies of painted spiny lobster (Panulirus versicolor) at Northwest Island, Great Barrier Reef, Australia. Marine and Freshwater Research, 63 (5). pp. 387-396.

Frisch, Ashley J., Cole, Andrew J., Hobbs, Jean-Paul A., Rizzari, Justin R., and Munkres, Katherine P. (2012) Effects of spearfishing on reef fish populations in a multi-use conservation area. PLoS ONE, 7 (12). e51938. pp. 1-11.

van der Meer, Martin, Hobbs, Jean-Paul, Jones, Geoffrey, and Van Herwerden, Lynne (2012) Genetic Connectivity among and self-replenishment within island populations of a restricted range subtropical reef fish. PLoS ONE, 7 (11). e49660. pp. 1-11.

van der Meer, M.H., Jones, G.P., Hobbs, J.-P.A., and Van Herwerden, L. (2012) Historic hybridization and introgression between two iconic Australian anemonefish and contemporary patterns of population connectivity. Ecology and Evolution, 2 (7). pp. 1592-1604.

van der Meer, Martin H., Gardner, Michael G., Hobbs, Jean-Paul A., Jones, G.P., and van Herwerden, Lynne (2012) Identification of seventeen microsatellite markers for conservation genetic studies of the endemic anemonefish, Amphiprion mccullochi. Conservation Genetics Resources, 4 (2). pp. 247-250.

van der Meer, Martin H., Gardiner, Michael G., Hobbs, Jean-Paul A., Pratchett, Morgan, and van Herwerden, Lynne (2012) Identification of twenty one microsatellite loci for conservation genetic studies of the endemic butterflyfish Chaetodon tricinctus. Conservation Genetics, 4 (2). pp. 243-246.

Hobbs, J-P. A., Jones, G.P., and Munday, P.L. (2011) Extinction risk in endemic marine fishes. Conservation Biology, 25 (5). pp. 1053-1055.

Frisch, Ashley J., and Hobbs, Jean-Paul A. (2011) Effects of autotomy on long-term survival and growth of painted spiny lobster (Panulirus versicolor) on the Great Barrier Reef, Australia. Marine Biology, 158 (7). pp. 1645-1652.

Richards, Z.T., and Hobbs, J.P.A. (2011) Prehistoric Pacific Island kings entombed in truncated coral pyramids. Coral Reefs, 30 (3). p. 737.

Hobbs, Jean-Paul A. (2011) Reef fishes on isolated islands: community structure, endemism and extinction. PhD thesis, James Cook University.

Hobbs, J.-P. A., and McDonald, C.A. (2010) Increased seawater temperature and decreased dissolved oxygen triggers fish kill at the Cocos (Keeling) Islands, Indian Ocean. Journal of Fish Biology, 77 (6). pp. 1219-1229.

Hobbs, Jean-Paul A., Ayling, Anthony, Choat, J. Howard, Gilligan, Justin J., McDonald, Christian A., Neilson, Joseph, and Newman, Stephen J. (2010) New records of marine fishes illustrate the biogeographic importance of Christmas Island, Indian Ocean. Zootaxa, 2422. pp. 63-68.

Hobbs, Jean-Paul, and Frisch, Ashley J. (2010) Coral disease in the Indian Ocean: taxonomic susceptibility, spatial distribution and the role of host density on the prevalence of white syndrome. Diseases of Aquatic Organisms, 89 (1). pp. 1-8.

Hobbs, Jean-Paul A,, Jones, G.P., and Munday, P.L. (2010) Rarity and extinction risk in coral reef angelfishes on isolated islands: interrelationships among abundance, geographic range size and specialisation. Coral Reefs, 29 (1). pp. 1-11.

Hobbs, J-P.A., Frisch, A.J., Hamanaka, T., McDonald, C.A., Gilligan, J.J., and Neilson, J. (2009) Seasonal aggregation of juvenile whale sharks (Rhincodon typus) at Christmas Island, Indian Ocean. Coral Reefs, 28 (3). p. 577.

Hobbs, Jean-Paul A., Frisch, Ashley J., Allen, Gerald R., and van Herwerden, Lynne (2009) Marine hybrid hotspot at Indo-Pacific biogeographic border. Biology Letters, 5 (2). pp. 258-261.

Frisch, Ashley J., and Hobbs, Jean-Paul A. (2009) Rapid assessment of anemone and anemonefish populations at the Keppel Islands [electronic resource]: a report to the Great Barrier Reef Marine Park Authority. Report. Great Barrier Reef Marine Park Authority, Australia.

Frisch, A.J., Baker, R., Hobbs, J-P. A., and Nankervis, L. (2008) A quantitative comparison of recreational spearfishing and linefishing on the Great Barrier Reef: implications for management of multi-sector coral reef fisheries. Coral Reefs, 27 (1). pp. 85-95.

Hobbs, J.-P.A, and Salmond, J.K. (2008) Cohabitation of Indian and Pacific Ocean species at Christmas and Cocos (Keeling) Islands. Coral Reefs, 27 (4). p. 933.

Ceccarelli, D., Choat, J.H., Ayling, A., Richards, Z.T., Van Herwerden, L., Ewel, G.D., Hobbs, J-P., and Cuff, B. (2008) Coringa-Herald National Nature Reserve Marine Survey 2007. Report. Department of the Environment, Water, Heritage and the Arts, Canberra, ACT, Australia.

Hobbs, J.P., Choat, J.H., Robbins, W.D., Van Herwerden, Lynne, Feary, D.A., and Ayling, Anthony (2008) Unique fish assemblages at world's southernmost oceanic coral reefs, Elizabeth and Middleton Reefs, Tasman Sea, Australia. Coral Reefs, 27 (1). p. 15.

Marie, A.D., van Herwerden, L., Choat, J.H., and Hobbs, J-P.A. (2007) Hybridization of reef fishes at the Indo-Pacific biogeographic barrier: a case study. Coral Reefs, 26 (4). pp. 841-850.

Frisch, Ashley J., and Hobbs, Jean-Paul A. (2007) Photographic identification based on unique, polymorphic colour patterns: a novel method for tracking a marine crustacean. Journal of Experimental Marine Biology and Ecology, 351 (1-2). pp. 294-299.

Frisch, Ashley J., Ulstrup, Karin E., and Hobbs, Jean-Paul A. (2007) The effects of clove oil on coral: an experimental evaluation using Pocillopora damicornis (Linnaeus). Journal of Experimental Marine Biology and Ecology, 345 (2). pp. 101-109.

Nilsson, G.E., Hobbs, J.P.A., Östlund-Nilsson, S., and Munday, P.L. (2007) Hypoxia tolerance and air-breathing ability correlate with habitat preference in coral-dwelling fishes. Coral Reefs, 26 (2). pp. 241-248.

Nilsson, Göran, Hobbs, Jean-Paul A., and Östlund-Nilsson, Sara (2007) Tribute to P. L. Lutz: respiratory ecophysiology of coral-reef teleosts. Journal of Experimental Biology, 210 (10). pp. 1673-1686.

Frisch, Ashley J., and Hobbs, Jean-Paul A. (2007) In vitro hybridization of coral trouts, Plectropomus leopardus (Lacepède, 1802) and Plectropomus maculatus (Bloch, 1790): a preliminary investigation. Aquaculture Research, 38 (2). pp. 215-218.

Hobbs, Jean-Paul A., Frisch, Ashley J., Hender, Jay, and Gilligan, Justin J. (2007) Long-distance oceanic movement of a solitary dugong (Dugong dugon) to the Cocos (Keeling) Islands. Aquatic Mammals, 33 (2). pp. 175-178.

Hobbs, J-P A., Frisch, A.J., Hender, J., and Gilligan, J.J. (2007) New records of Angelfishes (Pomacanthidae) and Butterflyfishes (Chaetodontidae) from Christmas and Cocos (Keeling) Islands, Indian Ocean. Journal of the Royal Society of Western Australia, 90 (2). pp. 107-109.

Frisch, Ashley, and Hobbs, Jean-Paul (2006) Long-term retention of internal elastomer tags in a wild population of painted crayfish (Panulirus versicolor [Latreille]) on the Great Barrier Reef. Journal of Experimental Marine Biology and Ecology, 339 (1). pp. 104-110.

Kroon, Frederiecke J., Munday, Philip L., Westcott, David A., Hobbs, Jean-Paul A., and Liley, N. Robin (2005) Aromatase pathway mediates sex change in each direction. Proceedings of the Royal Society of London Series B, Biological Sciences, 272 (1570). pp. 1399-1405.

Hobbs, Jean-Paul A., Munday, Philip L., and Jones, Geoffrey P. (2004) Social induction of maturation and sex determination in a coral reef fish. Proceedings of the Royal Society of London Series B: biological sciences, 271 (1553). pp. 2109-2114.

Hobbs, J.-P., and Munday, P.L. (2004) Intraspecific competition controls spatial distribution and social organisation of the coral-dwelling goby Gobiodon histrio. Marine Ecology Progress Series, 278. pp. 253-259.

Nilsson, Goran E., Hobbs, Jean-Paul, Munday, Philip L., and Ostlund-Nilsson, Sara (2004) Coward or braveheart: extreme habitat fidelity through hypoxia tolerance in a coral-dwelling goby. Journal of Experimental Biology, 207 (1). pp. 33-39.