Mason, Benjamin, Hayward, David C., Moya, Aurelie, Cooke, Ira, Sorenson, Alanna, Brunner, Ramona, Andrade Rodriguez, Natalia, Huerlimann, Roger, Bourne, David G., Schaeffer, Patrick, Grinblat, Mila, Ravasi, Timothy, Ueda, Nobuo, Tang, Sen-Lin, Ball, Eldon E., and Miller, David J. (2024) Microbiome manipulation by corals and other Cnidaria via quorum quenching. Current Biology, 34. pp. 3226-3232.

Xu, Jane, Mead, Oliver, Moya, Aurelie, Caglar, Cüneyt, Miller, David J., Adamski, Marcin, and Adamska, Maja (2023) Wound healing and regeneration in the reef building coral Acropora millepora. Frontiers in Ecology and Evolution, 10. 979278.

Mason, B., Cooke, I., Moya, A., Augustin, R., Lin, M.F., Satoh, N., Bosch, T.C.G., Bourne, D.G., Hayward, D.C., Andrade, N., Forêt, S., Ying, H., Ball, E.E., and Miller, D.J. (2021) AmAMP1 from Acropora millepora and damicornin define a family of coral-specific antimicrobial peptides related to the Shk toxins of sea anemones. Developmental and Comparative Immunology, 114. 103866.

Praher, Daniela, Zimmermann, Bob, Dnyansagar, Rohit, Miller, David J., Moya, Aurelie, Modepalli, Vengamanaidu, Fridrich, Arie, Sher, Daniel, Friis-Møller, Lene, Sundberg, Per, Fôret, Sylvain, Ashby, Regan, Moran, Yehu, and Technau, Ulrich (2021) Conservation and turnover of miRNAs and their highly complementary targets in early branching animals. Proceedings of the Royal Society B: Biological Sciences, 288 (1945). 20203169.

Bongaerts, Pim, Cooke, Ira R., Ying, Hua, Wels, Dagmar, den Haan, Stijn, Hernandez-Agreda, Alejandra, Brunner, Christopher A., Dove, Sophie, Englebert, Norbert, Eyal, Gal, Foret, Sylvain, Grinblat, Mila, Hay, Kyra B., Harii, Saki, Hayward, David C., Lin, Yu, Morana, Mihaljevi C., Moya, Aurelie, Muir, Paul, Sinniger, Frederic, Smallhorn-West, Patrick, Torda, Gergely, Ragan, Mark A., van Oppen, Madeleine J.M., and Hoegh-Guldberg, Ove (2021) Morphological stasis masks ecologically divergent coral species on tropical reefs. Current Biology, 31 (11). 2286-2298.e8.

Rouze, Heloise, Galand, Pierre E., Medina, Monica, Bongaerts, Pim, Pichon, Michel, Perez-Rosales, Gonzalo, Torda, Gergely, Moya, Aurelie, Raina, Jean-Baptiste, Hedouin, Laetitia, and UNSPECIFIED (2021) Symbiotic associations of the deepest recorded photosynthetic scleractinian coral (172 m depth). ISME Journal: multidisciplinary journal of microbial ecology, 15 (5). pp. 1564-1568.

Andrade Rodriguez, N., Moya, A., Jones, R., Miller, D.J., and Cooke, I. (2021) The significance of genotypic diversity in coral competitive interaction: a transcriptomic perspective. Frontiers in Ecology and Evolution, 9. 659360.

Mohamed, Amin R., Andrade, Natalia, Moya, Aurelie, Chan, Cheong Xin, Negri, Andrew P., Bourne, David G., Ying, Hua, Ball, Eldon E., and Miller, David J. (2020) Dual RNA-sequencing analyses of a coral and its native symbiont during the establishment of symbiosis. Molecular Ecology, 29 (20). pp. 3921-3937.

Cooke, Ira, Mead, Oliver, Whalen, Casey, Boote, Chloe, Moya, Aurelie, Ying, Hua, Robbins, Steven, Strugnell, Jan M., Darling, Aaron, Miller, David, Voolstra, Christian, and Adamska, Maya (2019) Molecular techniques and their limitations shape our view of the holobiont. Zoology, 137. 125695.

Smith, Hillary A., Moya, Aurelie, Cantin, Neal E., van Oppen, Madeleine J.H., and Torda, Gergely (2019) Observations of simultaneous sperm release and larval planulation suggest reproductive assurance in the coral Pocillopora acuta. Frontiers in Marine Science, 6. 362.

Jaspers, Cornelia, Fraune, Sebastian, Arnold, A. Elizabeth, Miller, David J., Bosch, Thomas C.G., Voolstra, Christian R., Adamska, Maja, Ainsworth, Tracy, Ball, Eldon, Boote, Chlöe, Bourne, David, Butterfield, Nicholas J., Chan, Cheong Xin, Cooke, Ira, Cowman, Peter F., Darling, Aaron, Davy, Simon K., Mohamed, Amin, Fabricius, Katharina, Valero Fortunato, Sofia V., Hernandez Agreda, Alejandra, Hoogenboom, Mia, Moya, Aurelie, Pita, Lucia, Ragan, Mark A., Robbins, Steven J., Andrade Rodriguez, Natalia R., Sakamaki, Kazuhiro, Schoepf, Verena, Seemann, Thorsten, Shinzato, Chuya, Stolarski, Jarosław, Strugnell, Jan, Takahashi, Shunichi, Tang, Sen-Lin, Webster, Nicole N, Whitelaw, Brooke, and Ying, Hua (2019) Resolving structure and function of metaorganisms through a holistic framework combining reductionist and integrative approaches. Zoology, 133. pp. 81-87.

Ying, Hua, Hayward, David C., Cooke, Ira, Wang, Weiwen, Moya, Aurelie, Siemering, Kirby R., Sprungala, Susanne, Ball, Eldon E., Foret, Sylvain, and Miller, David J. (2019) The whole-genome sequence of the coral Acropora millepora. Genome Biology and Evolution, 11 (5). pp. 1374-1379.

Torda, Gergely, Sambrook, Katie, Cross, Peter, Sato, Yui, Bourne, David G., Lukoschek, Vimoksalehi, Hill, Tessa, Torras Jorda, Georgina, Moya, Aurelie, and Willis, Bette L. (2018) Decadal erosion of coral assemblages by multiple disturbances in the Palm Islands, central Great Barrier Reef. Scientific Reports, 8. 11885. pp. 1-10.

Kenkel, Carly D., Moya, Aurelie, Strahl, Julia, Humphrey, Craig, and Bay, Line K. (2018) Functional genomic analysis of corals from natural CO2‐seeps reveals core molecular responses involved in acclimatization to ocean acidification. Global Change Biology, 24 (1). pp. 158-171.

Wu, Henry C., Dissard, Delphine, Le Cornec, Florence, Thil, François, Tribollet, Aline, Moya, Aurelie, and Douville, Eric (2017) Primary life stage boron isotope and trace elements incorporation in aposymbiotic Acropora millepora coral under ocean acidification and warming. Frontiers in Marine Science, 4. 129.

Lin, Mei-Fang, Moya, Aurelie, Ying, Hua, Chen, Chaolun Allen, Cooke, Ira, Ball, Eldon E., Forȇt, Sylvain, and Miller, David J. (2017) Analyses of corallimorpharian transcriptomes provide new perspectives on the evolution of calcification in the Scleractinia (corals). Genome Biology and Evolution, 9 (1). pp. 150-160.

Torda, Gergely, Donelson, Jennifer M., Aranda, Manuel, Barshis, Daniel J., Bay, Line, Berumen, Michael L., Bourne, David G., Cantin, Neal, Foret, Sylvain, Matz, Mikhail, Miller, David J., Moya, Aurelie, Putnam, Hollie M., Ravasi, Timothy, van Oppen, Madeleine J.H., Vega Thurber, Rebecca, Vidal-Dupiol, Jeremie, Voolstra, Christian R., Watson, Sue-Ann, Whitelaw, Emma, Willis, Bette L., and Munday, Philip L. (2017) Rapid adaptive responses to climate change in corals. Nature Climate Change, 7. pp. 627-636.

Cinner, Joshua Eli, Pratchett, Morgan Stuart, Graham, Nicholas Anthony James Graham, Messmer, Vanessa, Fuentes, Mariana Menezes Prata Bezerra, Ainsworth, Tracy, Ban, Natalie, Bay, Line Kolind, Blythe, Jessica, Dissard, Delphine, Dunn, Simon, Evans, Louisa, Fabinyi, Michael, Fidelman, Pedro, Figueiredo, Joana, Frisch, Ashley, Fulton, Christopher John, Hicks, Christina Chemtai, Lukoschek, Vimoksalehi, Mallela, Jenny, Moya, Aurelie, Penin, Lucie, Rummer, Jodie Lynn, Walker, Stefan, and Williamson, David Hall (2016) A framework for understanding climate change impacts on coral reef social–ecological systems. Regional Environmental Change, 16 (4). pp. 1133-1146.

Moya, Aurelie, Sakamaki, Kazuhiro, Mason, Benjamin M., Huisman, Lotte, Forêt, Sylvain, Weiss, Yvonne, Bull, Tara, Tomii, Kentaro, Imai, Kenichiro, Hayward, David C., Ball, Eldon E., and Miller, David J. (2016) Functional conservation of the apoptotic machinery from coral to man: the diverse and complex Bcl-2 and caspase repertoires of Acropora millepora. BMC Genomics, 17. 62. pp. 1-20.

Moya, Aurelie, Howes, Ella L., Lacoue-Labarthe, Thomas, Foret, Sylvain, Hanna, Bishoy, Medina, Mónica, Munday, Philip L., Ong, Jue-Sheng, Teyssié, Jean-Louis, Torda, Gergely, Watson, Sue-Ann, Miller, David J., Bijma, Jelle, and Gattuso, Jean-Pierre (2016) Near-future pH conditions severely impact calcification, metabolism and the nervous system in the pteropod Heliconoides inflatus. Global Change Biology, 22 (12). pp. 3888-3900.

Moya, A., Huisman, L., Fêret, S., Gattuso, J-P., Hayward, D.C., Ball, E.E., and Miller, D.J. (2015) Rapid acclimation of juvenile corals to CO2-mediated acidification by upregulation of heat shock protein and Bcl-2 genes. Molecular Ecology, 24 (2). pp. 438-452.

Rocker, Melissa M., Noonan, Sam, Humphrey, Craig, Moya, Aurelie, Willis, Bette L., and Bay, Line K. (2015) Expression of calcification and metabolism-related genes in response to elevated pCO(2) and temperature in the reef-building coral Acropora millepora. Marine Genomics, 24 (Part 3). pp. 313-318.

Chua, Chia-Miin, Leggat, William, Moya, Aurelie, and Baird, Andrew H. (2013) Near-future reductions in pH will have no consistent ecological effects on the early life-history stages of reef corals. Marine Ecology Progress Series, 486. pp. 143-151.

van de Locht, Renée, Verch, Andreas, Saunders, Martin, Dissard, Delphine, Rixen, Tim, Moya, Aurélie, and Kröger, Roland (2013) Microstructural evolution and nanoscale crystallography in scleractinian coral spherulites. Journal of Structural Biology, 183 (1). pp. 57-65.

Chua, Chia-Miin, Leggat, William, Moya, Aurelie, and Baird, Andrew (2013) Temperature affects the early life history stages of corals more than near future ocean acidification. Marine Ecology Progress Series, 475. pp. 85-92.

Bertucci, Anthony, Moya, Aurélie, Tambutté, Sylvie, Allemand, Denis, Supuran, Claudiu T., and Zoccola, Didier (2013) Carbonic anhydrases in anthozoan corals: a review. Bioorganic & Medicinal Chemistry, 21 (6). pp. 1437-1450.

Moya, A., Huisman, L., Ball, E.E., Hayward, D.C., Grasso, L.C., Chua, C.M., Woo, H.N., Gattuso, J.-P, Forêt, S., and Miller, D.J. (2012) Whole transcriptome analysis of the coral Acropora millepora reveals complex responses to CO2-driven acidification during the initiation of calcification. Molecular Ecology, 21 (10). pp. 2440-2454.

Sabourault, Cécile, Ganot, Philippe, Moya, Aurélie, and Furla, Paola (2012) Endosymbiosis drives transcriptomic adjustements and genomic adapatations in cnidarians. In: Proceedings of the 12th International Coral Reef Symposium. 7A. pp. 1-5. From: 12th International Coral Reef Symposium, 9-13 July 2012, Cairns, QLD, Australia.

Dupont, Sam, Moya, Aurélie, and Bailly, Xavier (2012) Stable photosymbiotic relationship under CO2-induced acidification in the acoel worm Symsagittifera roscoffensis. PLoS ONE, 7 (1). e29568. pp. 1-8.

Moya, A., Ganot, P., Furla, P., and Sabourault, C. (2012) The transcriptomic response to thermal stress is immediate, transient and potentiated by ultraviolet radiation in the sea anemone Anemonia viridis. Molecular Ecology, 21 (5). pp. 1158-1174.

Ganot, Philippe, Moya, Aurelie, Magnone, V, Allemand, D, Furla, P, and Sabourault, C (2011) Adaptations to Endosymbiosis in a Cnidarian- Dinoflagellate Association: Differential Gene Expression and Specific Gene Duplications. PLoS Genetics, 7 (7). e1002187. pp. 1-17.

Zoccola, Didier, Moya, Aurélie, Béranger, Guillaume E., Tambutté, Eric, Allemand, Denis, Carle, Georges F., and Tambutté, Sylvie (2009) Specific expression of BMP2/4 ortholog in biomineralizing tissues of corals and action on mouse BMP receptor. Marine Biotechnology, 11 (2). pp. 260-269.

Moya, Aurélie, Tambutté, Sylvie, Béranger, Guillaume, Gaume, Béatrice, Scimeca, Jean-Claude, Allemand, Denis, and Zoccola, Didier (2008) Cloning and use of a coral 36B4 gene to study the differential expression of coral genes between light and dark conditions. Marine Biotechnology, 10 (6). pp. 653-663.

Moya, Aurélie, Ferrier-Pagès, Christine, Furla, Paola, Richier, Sophie, Tambutté, Eric, Allemand, Denis, and Tambutté, Sylvie (2008) Calcification and associated physiological parameters during a stress event in the scleractinian coral Stylophora pistillata. Comparative Biochemistry and Physiology - Part A: Molecular and Integrative Physiology, 151 (1). pp. 29-36.

Moya, Aurelie, Tambutté, Sylvie, Bertucci, Anthony, Tambutté, Eric, Lotto, Séverine, Vullo, Daniela, Supuran, Claudiu T., Allemand, Denis, and Zoccola, Didier (2008) Carbonic anhydrase in the scleractinian coral Stylophora pistillata: characterization, localization, and role in biomineralization. Journal of Biological Chemistry, 283 (37). pp. 25475-25484.

Tambutté, Sylvie, Tambutté, Eric, Zoccola, Didier, Caminiti, Natacha, Lotto, Severine, Moya, Aurélie, Allemand, Denis, and Adkins, Jess (2007) Characterization and role of carbonic anhydrase in the calcification process of the azooxanthellate coral Tubastrea aurea. Marine Biology, 151 (1). pp. 71-83.

Moya, Aurélie, Tambutté, Sylvie, Tambutté, Eric, Zoccola, Didier, Caminiti, Natacha, and Allemand, Denis (2006) Study of calcification during a daily cycle of the coral Stylophora pistillata: implications for 'light-enhanced calcification'. Journal of Experimental Biology, 209 (17). pp. 3413-3419.