Zhang, Jia, Schneller, Nadja M., Field, Matt A., Chan, Cheong Xin, Miller, David J., Strugnell, Jan M., Riginos, Cynthia, Bay, Line, and Cooke, Ira (2024) Chromosomal inversions harbour excess mutational load in the coral, Acropora kenti, on the Great Barrier Reef. Molecular Ecology, 33 (16). e17468.

Briggs, Nico D., Page, Cathie A., Giuliano, Christine, Alessi, Cinzia, Hoogenboom, Mia, Bay, Line K., and Randall, Carly J. (2024) Dissecting coral recovery: bleaching reduces reproductive output in Acropora millepora. Coral Reefs, 43. pp. 557-569.

Marzonie, Magena R., Nitschke, Matthew R., Bay, Line K., Bourne, David G., and Harrison, Hugo B. (2024) Symbiodiniaceae diversity varies by host and environment across thermally distinct reefs. Molecular Ecology, 33 (9). e17342.

Matias, Ambrosio Melvin A., Popovic, Iva, Thia, Joshua A., Cooke, Ira R., Torda, Gergely, Lukoschek, Vimoksalehi, Bay, Line, Kim, Sun, and Riginos, Cynthia (2023) Cryptic diversity and spatial genetic variation in the coral Acropora tenuis and its endosymbionts across the Great Barrier Reef. Evolutionary Applications, 16 (2). pp. 293-310.

Madin, Joshua S., McWilliam, Michael, Quigley, Kate, Bay, Line K., Bellwood, David, Doropoulos, Christopher, Fernandes, Leanne, Harrison, Peter, Hoey, Andrew S., Mumby, Peter J., Ortiz, Juan C., Richards, Zoe T., Riginos, Cynthia, Schiettekatte, Nina M.D., Suggett, David J., and van Oppen, Madeleine J.H. (2023) Selecting coral species for reef restoration. Journal of Applied Ecology, 60 (8). pp. 1537-1544.

McLeod, Ian M., Hein, Margaux Y., Babcock, Russell, Bay, Line, Bourne, David G., Cook, Nathan, Doropoulos, Christopher, Gibbs, Mark, Harrison, Peter, Lockie, Stewart, van Oppen, Madeleine J.H., Mattocks, Neil, Page, Cathie A., Randall, Carly J., Smith, Adam, Smith, Hillary A., Suggett, David J., Taylor, Bruce, Vella, Karen J., Wachenfeld, David, and Boström-Einarsson, Lisa (2022) Coral restoration and adaptation in Australia: The first five years. PLoS ONE, 17 (11). e0273325.

Nielsen, J.J.V., Matthews, G., Frith, K.R., Harrison, H.B., Marzonie, M.R., Slaughter, K.L., Suggett, D.J., and Bay, L.K. (2022) Experimental considerations of acute heat stress assays to quantify coral thermal tolerance. Scientific Reports, 12 (1). 16831.

Elder, Holland, Weis, Virginia M., Montalvo Proano, Jose, Mocellin, Veronique J.L., Baird, Andrew H., Meyer, Eli, and Bay, Line K. (2022) Genetic Variation in Heat Tolerance of the Coral Platygyra Daedalea Indicates Potential for Adaptation to Ocean Warming. Frontiers in Marine Science, 9. 925845.

Quigley, Kate, Ramsby, Blake, Laffy, Patrick, Harris, Jessica, Mocellin, Veronique J.L., and Bay, Line K. (2022) Symbioses are restructured by repeated mass coral bleaching. Science Advances, 8 (49). eabq8349.

Salazar, Octavio R., Prasanna N, Arun, Cui, Guoxin, Bay, Line K., van Oppen, Madeleine J.H., Webster, Nicole S., and Aranda, Manuel (2022) The coral Acropora loripes genome reveals an alternative pathway for cysteine biosynthesis in animals. Science Advances, 8 (38). eabq0304.

Marzonie, Magena R., Bay, Line K., Bourne, David G., Hoey, Andrew S., Matthews, Samuel, Nielsen, Josephine J.V., and Harrison, Hugo B. (2022) The effects of marine heatwaves on acute heat tolerance in corals. Global Change Biology, 29 (2). pp. 404-416.

Marhoefer, Shelby R., Zenger, Kyall R., Strugnell, Jan M., Logan, Murray, van Oppen, Madeleine J.H., Kenkel, Carly D., and Bay, Line K. (2021) Signatures of Adaptation and Acclimatization to Reef Flat and Slope Habitats in the Coral Pocillopora damicornis. Frontiers in Marine Science, 8. 704709.

Quigley, Kate M., Marzonie, Magena, Ramsby, Blake, Abrego, David, Milton, Grant, van Oppen, Madeleine J.H., and Bay, Line K. (2021) Variability in fitness trade-offs amongst coral juveniles with mixed genetic backgrounds held in the wild. Frontiers in Marine Science, 8. 636177.

Baird, Mark E., Mongin, Mathieu, Rizwi, Farhan, Bay, Line K., Cantin, Neal E., Morris, Luke A., and Skerratt, Jennifer (2021) The effect of natural and anthropogenic nutrient and sediment loads on coral oxidative stress on runoff-exposed reefs. Marine Pollution Bulletin, 168. 112409.

Fuller, Zachary L., Mocellin, Veronique J. L., Morris, Luke A., Cantin, Neal, Shepherd, Jihanne, Sarre, Luke, Peng, Julie, Liao, Yi, Pickrell, Joseph, Andolfatto, Peter, Matz, Mikhail, Bay, Line K., and Przeworski, Molly (2020) Population genetics of the coral Acropora millepora: toward genomic prediction of bleaching. Science, 369 (6501). eaba4674.

Quigley, K.M., Randall, C.J., van Oppen, M.J.H., and Bay, L.K. (2020) Assessing the role of historical temperature regime and algal symbionts on the heat tolerance of coral juveniles. Biology Open, 9. bio047316.

Quigley, Kate, Bay, Line K., and van Oppen, Madeleine J. H. (2020) Genome-wide SNP analysis reveals an increase in adaptive genetic variation through selective breeding of coral. Molecular Ecology, 29 (12). pp. 2176-2188.

Anthony, Kenneth R. N., Helmstedt, Kate J., Bay, Line K., Fidelman, Pedro, Hussey, Karen E., Lundgren, Petra, Mead, David, McLeod, Ian M., Mumby, Peter J., Newlands, Maxine, Schaffelke, Britta, Wilson, Kerrie A., and Hardisty, Paul E. (2020) Interventions to help coral reefs under global change – a complex decision challenge. PLoS ONE, 15 (8). e0236399.

Nielsen, J.J.V., Kenkel, C.D., Bourne, D.G., Despringhere, L., Mocellin, V.J.L., and Bay, L.K. (2020) Physiological effects of heat and cold exposure in the common reef coral Acropora millepora. Coral Reefs, 39 (2). pp. 259-269.

Wolfe, Kennedy, Anthony, Ken, Babcock, Russell C., Bay, Line, Bourne, David G., Burrows, Damien, Byrne, Maria, Deaker, Dione, Diaz-Pulido, Guillermo, Frade, Pedro, Gonzalez-Rivero, Manuel, Hoey, Andrew, Hoogenboom, Mia, McCormick, Mark, Ortiz, Juan Carlos, Razak, Tries, Richardson, Anthony J., Roff, George, Sheppard-Brennand, Hannah, Stella, Jessica, Thompson, Angus, Watson, Sue-Ann, Webster, Nicole, Audas, Donna, Beeden, Roger, Carver, Jesseca, Cowlishaw, Mel, Dyer, Michelle, Groves, Paul, Horne, Dylan, Thiault, Lauric, Vains, Jason, Wachenfeld, David, Weekers, Damien, Williams, Genevieve, and Mumby, Peter J. (2020) Priority species to support the functional integrity of coral reefs. Oceanography and Marine Biology: an annual review, 58. pp. 179-318.

Randall, Carly J, Speaks, Justin E., Lager, Claire, Hagedorn, Mary, Llewellyn, Lyndon, Pulak, Rock, Thompson, Julia, Bay, Line K., Mead, David, Heyward, Andrew J., and Negri, Andrew P. (2020) Rapid counting and spectral sorting of live coral larvae using large-particle flow cytometry. Scientific Reports, 10. 12919.

Randall, Carly J., Negri, Andrew P., Quigley, Kate M., Foster, Taryn, Ricardo, Gerard F., Webster, Nicole S., Bay, Line K., Harrison, Peter L., Babcock, Russ C., and Heyward, Andrew J. (2020) Sexual production of corals for reef restoration in the Anthropocene. Marine Ecology Progress Series, 635. pp. 203-232.

Ceccarelli, Daniela M., McLeod, Ian M., Boström-Einarsson, Lisa, Bryan, Scott E., Chartrand, Kathryn M., Emslie, Michael J., Gibbs, Mark T., Gonzalez Rivero, Manuel, Hein, Margaux Y., Heyward, Andrew, Kenyon, Tania M., Lewis, Brett M., Newlands, Maxine, Mattocks, Neil, Schläppy, Marie-Lise, Suggett, David J., and Bay, Line K. (2020) Substrate stabilisation and small structures in coral restoration: state of knowledge, and considerations for management and implementation. PLoS ONE, 15 (10). e0240846.

Morris, Luke A., Voolstra, Christian R., Quigley, Kate M., Bourne, David G., and Bay, Line K. (2019) Nutrient availability and metabolism Affect the stability of coral–Symbiodiniaceae symbioses. Trends in Microbiology, 27 (8). pp. 678-689.

Rocker, Melissa M., Kenkel, Carly D., Francis, David S., Willis, Bette L., and Bay, Line K. (2019) Plasticity in gene expression and fatty acid profiles of Acropora tenuis reciprocally transplanted between two water quality regimes in the central Great Barrier Reef, Australia. Journal of Experimental Marine Biology and Ecology, 511. pp. 40-53.

Wright, Rachel M., Mera, Hanaka, Kenkel, Carly D., Nayfa, Maria, Bay, Line K., and Matz, Mikhail V. (2019) Positive genetic associations among fitness traits support evolvability of a reef-building coral under multiple stressors. Global Change Biology, 25 (10). pp. 3294-3304.

Burrows, Damien, Purandare, Jemma, Bay, Line, Cook, Nathan, Koopman, Danielle, Long, Suzanne, Lundgren, Petra, Mead, David, Morris, Sheriden, Newlands, Maxine, Roth, Christian, Wachenfeld, David, Smith, Adam K., and McLeod, Ian M. (2019) Symposium report: Great Barrier Reef restoration symposium, 2018. Ecological Management and Restoration, 20 (2). pp. 175-178.

Rocker, Melissa M., Francis, David S., Fabricius, Katharina E., Willis, Bette L., and Bay, Line K. (2019) Temporal and spatial variation in fatty acid composition in Acropora tenuis corals along water quality gradients on the Great Barrier Reef, Australia. Coral Reefs, 38 (2). pp. 215-228.

Quigley, Kate M., Bay, Line K., and van Oppen, Madeleine J. H. (2019) The active spread of adaptive variation for reef resilience. Ecology and Evolution, 9 (19). pp. 11122-11135.

Tan, C.H, Pratchett, M.S., Bay, L.K., Graham, E.M., and Baird, A.H. (2018) Biennium horribile: very high mortality in the reef coral Acropora millepora on the Great Barrier Reef in 2009 and 2010. Marine Ecology Progress Series, 604. pp. 133-142.

Kenkel, Carly D., Moya, Aurelie, Strahl, Julia, Humphrey, Craig, and Bay, Line K. (2018) Functional genomic analysis of corals from natural CO2‐seeps reveals core molecular responses involved in acclimatization to ocean acidification. Global Change Biology, 24 (1). pp. 158-171.

Quigley, Kate M., Bay, Line K., and Willis, Bette L. (2018) Leveraging new knowledge of Symbiodinium community regulation in corals for conservation and reef restoration. Marine Ecology Progress Series, 600. pp. 245-253.

Ceccarelli, Daniela M., Loffler, Zoe, Bourne, David G., Al Moajil-Cole, Grace S., Boström Einarsson, Lisa, Evans-Illidge, Elizabeth, Fabricius, Katharina, Glasl, Bettina, Marshall, Paul, McLeod, Ian, Read, Mark, Schaffelke, Britta, Smith, Adam K., Jorda, Georgina T., Williamson, David H., and Bay, Line (2018) Rehabilitation of coral reefs through removal of macroalgae: state of knowledge and considerations for management and implementation. Restoration Ecology, 26 (5). pp. 827-838.

Quigley, Kate M., Warner, Patricia A., Bay, Line K., and Willis, Bette L. (2018) Unexpected mixed-mode transmission and moderate genetic regulation of Symbiodinium communities in a brooding coral. Heredity, 121 (6). pp. 524-536.

Quigley, Kate M., Torda, Gergely, and Bay, Line K. (2018) The use of larvae or recruits in coral restoration initiatives: Symbiodinium acquisition does not differ between coral life stages in the wild. Restoration Ecology, 26 (3). pp. 422-425.

Quigley, Kate M., Willis, Bette L., and Bay, Line K. (2017) Heritability of the Symbiodinium community in vertically-and horizontally-transmitting broadcast spawning corals. Scientific Reports, 7 (1). 8219.

Montanari, Stefano R., Hobbs, Jean-Paul, Pratchett, Morgan S., Bay, Line K., and van Herwerden, Lynne (2017) Naturally occurring hybrids of coral reef butterflyfishes have similar fitness compared to parental species. PLoS ONE, 12 (3). e0173212.

Torda, Gergely, Donelson, Jennifer M., Aranda, Manuel, Barshis, Daniel J., Bay, Line, Berumen, Michael L., Bourne, David G., Cantin, Neal, Foret, Sylvain, Matz, Mikhail, Miller, David J., Moya, Aurelie, Putnam, Hollie M., Ravasi, Timothy, van Oppen, Madeleine J.H., Vega Thurber, Rebecca, Vidal-Dupiol, Jeremie, Voolstra, Christian R., Watson, Sue-Ann, Whitelaw, Emma, Willis, Bette L., and Munday, Philip L. (2017) Rapid adaptive responses to climate change in corals. Nature Climate Change, 7. pp. 627-636.

Quigley, Kate M., Bay, Line K., and Willis, Bette L. (2017) Temperature and water quality-related patterns in sediment-associated Symbiodinium communities impact symbiont uptake and fitness of juveniles in the genus Acropora. Frontiers in Marine Science, 4. 401.

Rocker, Melissa M., Francis, David S., Fabricius, Katharina E., Willis, Bette L., and Bay, Line K. (2017) Variation in the health and biochemical condition of the coral Acropora tenuis along two water quality gradients on the Great Barrier Reef, Australia. Marine Pollution Bulletin, 119 (2). pp. 106-119.

Cinner, Joshua Eli, Pratchett, Morgan Stuart, Graham, Nicholas Anthony James Graham, Messmer, Vanessa, Fuentes, Mariana Menezes Prata Bezerra, Ainsworth, Tracy, Ban, Natalie, Bay, Line Kolind, Blythe, Jessica, Dissard, Delphine, Dunn, Simon, Evans, Louisa, Fabinyi, Michael, Fidelman, Pedro, Figueiredo, Joana, Frisch, Ashley, Fulton, Christopher John, Hicks, Christina Chemtai, Lukoschek, Vimoksalehi, Mallela, Jenny, Moya, Aurelie, Penin, Lucie, Rummer, Jodie Lynn, Walker, Stefan, and Williamson, David Hall (2016) A framework for understanding climate change impacts on coral reef social–ecological systems. Regional Environmental Change, 16 (4). pp. 1133-1146.

Dixon, Groves B., Bay, Line K., and Matz, Mikhail V. (2016) Evolutionary consequences of DNA methylation in a basal Metazoan. Molecular Biology and Evolution, 33 (9). pp. 2285-2293.

Quigley, Kate M., Willis, Bette L., and Bay, Line K. (2016) Maternal effects and Symbiodinium community composition drive differential patterns in juvenile survival in the coral Acropora tenuis. Royal Society Open Science, 3. 160471. pp. 1-17.

Howells, E.J., Willis, B.L., Bay, L.K., and van Oppen, M.J.H. (2016) Microsatellite allele sizes alone are insufficient to delineate species boundaries in Symbiodinium. Molecular Ecology, 25 (12). pp. 2719-2723.

Bay, Line K., Doyle, Jason, Logan, Murray, and Berkelmans, Raymond (2016) Recovery from bleaching is mediated by threshold densities of background thermo-tolerant symbiont types in a reef-building coral. Royal Society Open Science, 3 (6). 160322. pp. 1-10.

Rocker, Melissa M., Noonan, Sam, Humphrey, Craig, Moya, Aurelie, Willis, Bette L., and Bay, Line K. (2015) Expression of calcification and metabolism-related genes in response to elevated pCO(2) and temperature in the reef-building coral Acropora millepora. Marine Genomics, 24 (Part 3). pp. 313-318.

Montanari, Stefano R., Hobbs, Jean-Paul A., Pratchett, Morgan S., Bay, Line K., and Van Herwerden, Lynne (2014) Does genetic distance between parental species influence outcomes of hybridization among coral reef butterflyfishes? Molecular Ecology, 23 (11). pp. 2757-2770.

Dixon, Groves B., Bay, Line K., and Matz, Mikhail V. (2014) Bimodal signatures of germline methylation are linked with gene expression plasticity in the coral Acropora millepora. BMC Genomics, 15. 1103. pp. 1-11.

Quigley, Kate M., Davies, Sarah W., Kenkel, Carly D., Willis, Bette L., Matz, Mikhail V., and Bay, Line K. (2014) Deep-sequencing method for quantifying background abundances of Symbiodinium types: exploring the rare Symbiodinium biosphere in reef-building corals. PLoS One, 9 (4). e94297. pp. 1-15.

Montanari, Stefano R., Gardner, Michael G., Hobbs, Jean-Paul A., Pratchett, Morgan S., Bay, Line K., and van Herwerden, Lynne (2013) Isolation and characterization of twenty microsatellite markers for the study of hybridization in butterflyfish of the genus Chaetodon. Conservation Genetics Resources, 5 (3). pp. 783-786.

Howells, Emily J., Willis, Bette L., Bay, Line K., and van Oppen, Madeleine J.H. (2013) Spatial and temporal genetic structure of Symbiodinium populations within a common reef-building coral on the Great Barrier Reef. Molecular Ecology, 22 (14). pp. 3693-3708.

Howells, Emily J., Berkelmans, Ray, van Oppen, Madeleine J.H., Willis, Bette L., and Bay, Line K. (2013) Historical thermal regimes define limits to coral acclimatization. Ecology, 94 (5). pp. 1078-1088.

Pratchett, Morgan S., Bay, Line K., Coker, Darren J., Cole, Andrew J., and Lawton, Rebecca J. (2012) Effects of coral bleaching on coral habitats and associated fishes. In: Lunney, Daniel, and Hutchings, Pat, (eds.) Wildlife and Climate Change: towards robust conservation strategies for Australian fauna. RZS Forum Series . Royal Zoological Society New South Wales, Sydney, NSW, pp. 59-67.

Paley, Allison S., and Bay, Line K. (2012) Bleaching condition varies among Acropora millepora color morphs. In: Proceedings of the 12th International Coral Reef Symposium. 9A_9. pp. 1-5. From: 12th International Coral Reef Symposium, 9-13 July 2012, Cairns, QLD, Australia.

Howells, E. J., Beltran, V. H., Bay, L. K., Willis, B. L., Van Oppen, M. J. H., and Larsen, N. W. (2012) Coral thermal tolerance shaped by local adaptation of photosymbionts. Nature Climate Change, 2 (2). pp. 116-120.

Tan, James C.H., Pratchett, Morgan S., Bay, Line K., and Baird, Andrew H. (2012) Massive coral mortality following a large flood event. In: Proceedings of the 12th International Coral Reef Symposium. 11E_1. pp. 1-4. From: 12th International Coral Reef Symposium, 9-13 July 2012, Cairns, QLD, Australia.

Rocker, Melissa M., Willis, Bette L., and Bay, Line K. (2012) Thermal stress-related gene expression in corals with different Symbiodinium types. In: Proceedings of the 12th International Coral Reef Symposium. 9A_12. pp. 1-5. From: 12th International Coral Reef Symposium, 9-13 July 2012, Cairns, QLD, Australia.

Bay, Line Kolind, Cumbo, Vivian Ruth, Abrego, David, Kool, Johnathan Travis, Ainsworth, Tracy Danielle, and Willis, Bette Lynn (2011) Infection dynamics vary between Symbiodinium types and cell surface treatments during establishment of endosymbiosis with coral larvae. Diversity, 3 (3). pp. 356-374.

Lawton, Rebecca J., Pratchett, Morgan S., and Bay, Line K. (2011) Cross-species amplification of 44 microsatellite loci developed for Chaetodon trifascialis, C. lunulatus and C. vagabundus in 22 related butterflyfish species. Molecular Ecology Resources, 11 (2). pp. 323-327.

Souter, P., Bay, L.K., Andreakis, N., Császár, N., Seneca, F.O., and van Oppen, M.J.H. (2011) A multilocus, temperature stress-related gene expression profile assay in Acropora millepora, a dominant reef-building coral. Molecular Ecology Resources, 11 (2). pp. 328-334.

Levy, O., Kaniewska, P., Alon, S., Eisenberg, E., Karako-Lampert , S., Bay, L.K., Reef, R., Rodriguez-Lanetty , M., Miller, D.J., and Hoegh-Guldberg, O. (2011) Complex diel cycles of gene expression in coral-algal symbiosis. Science, 331 (6014). p. 175.

Pratchett, Morgan S., Bay, Line, Gehrke, Peter C., Koehn, John D., Osborne, Kate, Pressey, Robert L., Sweatman, Hugh P.A., and Wachenfeld, David (2011) Contribution of climate change to degradation and loss of critical fish habitats in Australian marine and freshwater environments. Marine and Freshwater Research, 62 (9). pp. 1062-1081.

Graham, Nicholas A.J., Ainsworth, Tracy D., Baird, Andrew H., Ban, Natalie C., Bay, Line K., Cinner, Joshua E., De Freitas, Debora M., Diaz-Pulido, Guillermo, Dornelas, Maria, Dunn, Simon R., Fidelman, Pedro I.J., Foret, Sylvain, Good, Tatjana C., Kool, Johnathan, Mallela, Jennie, Penin, Lucie, Pratchett, Morgan S., and Williamson, David H. (2011) From microbes to people: tractable benefits of no-take areas for coral reefs. Oceanography and Marine Biology, 49. pp. 105-136.

Lawton, Rebecca, Messmer, Vanessa, Pratchett, Morgan, and Bay, Line (2011) High gene flow across large geographic scales reduces extinction risk for a highly specialised coral feeding butterflyfish. Molecular Ecology, 20. pp. 3584-3598.

Lawton, Rebecca J., Pratchett, Morgan S., and Bay, Line K. (2010) Isolation and characterization of 29 microsatellite loci for studies of population connectivity in the butterflyfishes Chaetodon trifascialis and Chaetodon lunulatus. Conservation Genetics Resources, 2 (Supplement 1). 209-213.

Jones, D.B., Jerry, D.R., McCormick, M.I., and Bay, L.K. (2010) The population genetic structure of a common tropical damselfish on the Great Barrier Reef and eastern Papua New Guinea. Coral Reefs, 29 (2). pp. 455-467.

Souter, P., Willis, B.L., Bay, L.K., Caley, M.J., Muirhead, A., and van Oppen, M.J.H. (2010) Location and disturbance affect population genetic structure in four coral species of the genus Acropora on the Great Barrier Reef. Marine Ecology Progress Series, 416. pp. 35-45.

Bay, Line, Howells, Emily J., and van Oppen, Madeleine J.H. (2009) Isolation, characterisation and cross amplification of thirteen microsatellite loci for coral endo-symbiotic dinoflagellates (Symbiodinium clade C). Conservation Genetics Resources, 1 (1). pp. 199-203.

Bay, Line K., Ulstrup, Karin E., Nielsen, H. Bjorn, Jarmer, Hanne, Goffard, Nicolas, Willis, Bette L., Miller, David J., and van Oppen, Madeleine J.H. (2009) Microarray analysis reveals transcriptional plasticity in the reef building coral Acropora millepora. Molecular Ecology, 18 (14). pp. 3062-3075.

Bay, Line K., Nielsen, H. Bjørn, Jarmer, Hanne, Seneca, Francois, and van Oppen, Madeleine J.H. (2009) Transcriptomic variation in a coral reveals pathways of clonal organisation. Marine Genomics, 2 (2). pp. 119-125.

Bay, Line K., Caley, M. Julian, and Crozier, Ross H. (2008) Meta-population structure in a coral reef fish demonstrated by genetic data on patterns of migration, extinction and re-colonisation. BMC Evolutionary Biology, 8. .

Jones, David, Jerry, Dean, McCormick, Mark, and Bay, Line (2008) Development of nine microsatellite markers for Pomacentrus amboinensis. Molecular Ecology Resources, 8 (6). pp. 1332-1334.

Bay, Line K., Crozier, Y. Ching, and Crozier, Ross H. (2007) Isolation and characterization of eight microsatellite loci in the mangrove mud-nesting ant, Polyrhachis sokolova. Molecular Ecology Notes, 7 (6). pp. 1239-1241.

Munkres, Katherine P., Bay, Line K., Jerry, Dean R., McCormick, Mark I., and van Herwerden, Lynne (2007) Development and characterization of microsatellite markers for parentage analyses of the coral reef damselfish (Pomacentrus amboinensis: Pomacentridae). Conservation Genetics, 8 (4). pp. 987-990.

Bay, L.K., Crozier, R.H., and Caley, M.J. (2006) The relationship between population genetic structure and pelagic larval duration in coral reef fishes on the Great Barrier Reef. Marine Biology, 149 (5). pp. 1247-1256.

Bay, L.K., Buechler, K., Gagliano, M., and Caley, M.J. (2006) Intraspecific variation in the pelagic larval duration of tropical reef fishes. Journal of Fish Biology, 68 (4). pp. 1206-1214.

Bay, Line Kolind (2005) The population genetic structure of coral reef fishes on the Great Barrier Reef. PhD thesis, James Cook University.

Bay, L.K., Choat, J.H., van Herwerden, L., and Robertson, D.R. (2004) High genetic diversities and complex genetic structure in an Indo-Pacific tropical reef fish (Chlorurus sordidus): evidence of an unstable evolutionary past? Marine Biology, 144 (4). pp. 757-767.

Bay, L.K., Jones, G.P., and McCormick, M.I. (2001) Habitat selection and aggression as determinants of spatial segregation among damselfish on a coral reef. Coral Reefs, 20 (3). pp. 289-298.