Budd, Alyssa M., Cooper, Madalyn K., Le Port, Agnès, Schils, Tom, Mills, Matthew S., Deinhart, Mari E., Huerlimann, Roger, and Strugnell, Jan M. (2021) First detection of critically endangered scalloped hammerhead sharks (Sphyrna lewini) in Guam, Micronesia, in five decades using environmental DNA. Ecological Indicators, 127. 107649.

Cooper, Madalyn K., Huerlimann, Roger, Edmunds, Richard C., Budd, Alyssa M., Le Port, Agnes, Kyne, Peter M., Jerry, Dean R., and Simpfendorfer, Colin A. (2021) Improved detection sensitivity using an optimal eDNA preservation and extraction workflow and its application to threatened sawfishes. Aquatic Conservation: marine and freshwater ecosystems, 31 (8). pp. 2131-2148.

McLeod, Ian M., Bourne, David, Ceccarelli, Daniela M., Boström-Einarsson, Lisa, Cook, Nathan, Fulton, Stella E., Hancock, Boze, Harrison, Peter, Hein, Margaux, Le Port, Agnès, Paewai-Higgins, Roma, Smith, Hillary A., and Smith, Adam (2020) Best practice coral restoration for the Great Barrier Reef. Report. Reef and Rainforest Research Centre Limited (RRRC), Cairns, QLD, Australia.

Guppy, Jarrod L., Jones, David B., Kjeldsen, Shannon R., Le Port, Agnes, Khatkar, Mehar S., Wade, Nicholas M., Sellars, Melony J., Raadsma, Herman W., Jerry, Dean R., and Zenger, Kyall R. (2020) Development and validation of a RAD-Seq target-capture based genotyping assay for routine application in advanced black tiger shrimp (Penaeus monodon) breeding programs. BMC Genomics, 21. 541.

Huerlimann, R., Cooper, M.K., Edmunds, R.C., Villacorta-Rath, C., Le Port, A., Robson, H.L.A., Strugnell, J.M., Burrows, D., and Jerry, D.R. (2020) Enhancing tropical conservation and ecology research with aquatic environmental DNA methods: an introduction for non-environmental DNA specialists. Animal Conservation, 23 (6). pp. 632-645.

McLeod, I.M., Bostrom Einarsson, L., Creighton, C., D'Anastasi, B., Diggles, B., Dwyer, P.G., Firby, L., Le Port, A., Luongo, A., Martinez-Baena, F., McOrrie, S., Heller-Wagner, G., and Gillies, C.L (2020) Habitat value of Sydney rock oyster (Saccostrea glomerata) reefs on soft sediments. Marine and Freshwater Research, 71 (7). pp. 771-781.

Roycroft, Emily J., Le Port, Agnes, and Lavery, Shane D. (2019) Population structure and male-biased dispersal in the short-tail stingray Bathytoshia brevicaudata (Myliobatoidei: Dasyatidae). Conservation Genetics, 20 (4). pp. 717-728.

Jones, Andrew T., Lavery, Shane D., Le Port, Agnes, Wang, You Gan, Blower, Dean, and Ovenden, Jennifer (2019) Sweepstakes reproductive success is absent in a New Zealand snapper (Chrysophrus auratus) population protected from fishing despite "tiny" Ne/N ratios elsewhere. Molecular Ecology, 28 (12). pp. 2986-2995.

Gillies, Chris, McLeod, Ian, Alleway, Heidi K., Cook, Peter, Crawford, Christine, Creighton, Colin, Diggles, Ben, Ford, John, Hamer, Paul, Heller-Wagner, Gideon, Lebrault, Emma, Le Port, Agnes, Russell, Kylie, Sheaves, Marcus, and Warnock, Bryn (2018) Australian shellfish ecosystems: past distribution, current status and future direction. PLoS ONE, 13 (2).

Le Port, Agnes, Bakker, Judith, Cooper, Madalyn K., Huerlimann, Roger, and Mariani, Stefano (2018) Environmental DNA (eDNA): a valuable tool for ecological inference and management of sharks and their relatives. In: Carrier, Jeffrey C., Heithaus, Michael R., and Simpfendorfer, Colin A., (eds.) Shark Research: emerging technologies and applications for the field and laboratory. Marine Biology Series . CRC Press, Boca Raton, FL, USA, pp. 255-283.

Le Port, A., Montgomery, J.C., Smith, A.N.H., Croucher, A.E., McLeod, I.M., and Lavery, S.D. (2017) Temperate marine protected area provides recruitment subsidies to local fisheries. Proceedings of the Royal Society of London Series B, Biological Sciences, 284 (1865). 20171300.

Le Port, A., Roycroft, E.J., Thakur, V., and Lavery, S.D. (2016) Characterisation of eleven new polymorphic microsatellite markers for the coastal stingray Dasyatis brevicaudata (Dasyatidae Hutton 1875), and cross-amplification in seven dasyatid species. Biochemical Systematics and Ecology, 65. pp. 234-237.

Le Port, Agnes, Montgomery, J. C., and Croucher, A.E. (2014) Biophysical modelling of snapper Pagrus auratus larval dispersal from a temperate MPA. Marine Ecology Progress Series, 515. pp. 203-215.

Parsons, D.M., Sim-Smith, C.J., Cryer, M., Francis, M.P., Hartill, B., Jones, E.G., Le Port, A., Lowe, M., McKenzie, J., Morrison, M., Paul, L.J., Radford, C., Ross, P.M., Spong, K.T., Trnski, T., Usmar, N., Walsh, C., and Zeldis, J. (2014) Snapper (Chrysophrys auratus): a review of life history and key vulnerabilities in New Zealand. New Zealand Journal of Marine and Freshwater Research, 48 (2). pp. 256-283.

Le Port, A., Pawley, M.D.M., and Lavery, S.D. (2013) Speciation of two stingrays with antitropical distributions: low levels of divergence in mitochondrial DNA and morphological characters suggest recent evolution. Aquatic Biology, 19. pp. 153-165.

Le Port, A., Lavery, S., and Montgomery, J.C. (2012) Conservation of coastal stingrays: seasonal abundance and population structure of the short-tailed stingray Dasyatis brevicaudata at a Marine Protected Area. ICES Journal of Marine Science, 69 (8). pp. 1427-1435.

McLeod, Ian M., Parsons, Darren M., Morrison, Mark A., Le Port, Agnès, and Taylor, Richard B. (2012) Factors affecting the recovery of soft-sediment mussel reefs in the Firth of Thames, New Zealand. Marine and Freshwater Research, 63 (1). pp. 78-83.

Le Port, Agnès, and Lavery, Shane (2012) Population structure and phylogeography of the short-tailed stingray, Dasyatis brevicaudata (Hutton 1875), in the Southern Hemisphere. Journal of Heredity, 103 (2). pp. 174-185.

Le Port, Agnès, Sippel, Tim, and Montgomery, John C. (2008) Observations of mesoscale movements in the short-tailed stingray, Dasyatis brevicaudata from New Zealand using a novel PSAT tag attachment method. Journal of Experimental Marine Biology and Ecology, 359 (2). pp. 110-117.