Zamborain-Mason, Jessica, Cinner, Joshua E., MacNeil, M. Aaron, Graham, Nicholas A.J., Hoey, Andrew S., Beger, Maria, Brooks, Andrew J., Booth, David J., Edgar, Graham J., Feary, David A., Ferse, Sebastian C.A., Friedlander, Alan M., Gough, Charlotte L.A., Green, Alison L., Mouillot, David, Polunin, Nicholas V.C., Stuart-smith, Rick D., Wantiez, Laurent, Williams, Ivor D., Wilson, Shaun K., and Connolly, Sean R. (2023) Sustainable reference points for multispecies coral reef fisheries. Nature Communications, 14 (1). 5368.

Mellin, Camille, Hicks, Christina C., Fordham, Damien A., Golden, Christopher D., Kjellevold, Marian, MacNeil, M. Aaron, Maire, Eva, Mangubhai, Sangeeta, Mouillot, David, Nash, Kirsty L., Omukoto, Johnstone O., Robinson, James P.W., Stuart-Smith, Rick D., Zamborain-Mason, Jessica, Edgar, Graham J., and Graham, Nicholas A.J. (2022) Safeguarding nutrients from coral reefs under climate change. Nature Ecology and Evolution, 6. pp. 1808-1817.

MacNeil, M. Aaron, Chapman, Demian D., Heupel, Michelle, Simpfendorfer, Colin A., Heithaus, Michael, Meekan, Mark, Harvey, Euan, Goetze, Jordan, Kiszka, Jeremy, Bond, Mark E., Currey-Randall, Leanne M., Speed, Conrad W., Sherman, C. Samantha, Rees, Matthew J., Udyawer, Vinay, Flowers, Kathryn I., Clementi, Gina, Valentin-Albanese, Jasmine, Gorham, Taylor, Adam, M. Shiham, Ali, Khadeeja, Pina-Amargós, Fabián, Angulo-Valdés, Jorge A., Asher, Jacob, Barcia, Laura García, Beaufort, Océane, Benjamin, Cecilie, Bernard, Anthony T.F, Berumen, Michael L., Bierwagen, Stacy, Bonnema, Erika, Bown, Rosalind M.K., Bradley, Darcy, Brooks, Edd, Brown, J. Jed, Buddo, Dayne, Burke, Patrick, Cáceres, Camila, Cardeñosa, Diego, Carrier, Jeffrey C., Caselle, Jennifer E., Charloo, Venkatesh, Claverie, Thomas, Clua, Eric, Cochran, Jesse E.M., Cook, Neil, Cramp, Jessica, D'Alberto, Brooke, de Graaf, Martin, Dornhege, Mareike, Estep, Andy, Fanovich, Lanya, Farabough, Naomi F., Fernando, Daniel, Flam, Anna L., Floros, Camilla, Fourqurean, Virginia, Garla, Ricardo, Gastrich, Kirk, George, Lachlan, Graham, Rory, Guttridge, Tristan, Hardenstine, Royale S., Heck, Stephen, Henderson, Aaron C., Hertler, Heidi, Hueter, Robert, Johnson, Mohini, Jupiter, Stacy, Kasana, Devanshi, Kessel, Steven T., Kiilu, Benedict, Kirata, Taratu, Kuguru, Baraka, Kyne, Fabian, Langlois, Tim, Lédée, Elodie J.I., Lindfield, Steve, Luna-Acosta, Andrea, Maggs, Jade, Manjaji-Matsumoto, B. Mabel, Marshall, Andrea, Matich, Philip, McCombs, Erin, McLean, Dianne, Meggs, Llewelyn, Moore, Stephen, Mukherji, Sushmita, Murray, Ryan, Kaimuddin, Muslimin, Newman, Stephen J., Nogués, Josep, Obota, Clay, O'Shea, Owen, Osuka, Kennedy, Papastamatiou, Yannis P., Perera, Nishan, Peterson, Bradley, Ponzo, Alessandro, Prasetyo, Andhika, Quamar, L.M. Sjamsul, Quinlan, Jessica, Ruiz-Abierno, Alexei, Sala, Enric, Samoilys, Melita, Schärer-Umpierre, Michelle, Schlaff, Audrey, Simpson, Nikola, Smith, Adam N.H., Sparks, Lauren, Tanna, Akshay, Torres, Rubén, Travers, Michael J., van Zinnicq Bergmann, Maurits, Vigliola, Laurent, Ward, Juney, Watts, Alexandra M., Wen, Colin, Whitman, Elizabeth, Wirsing, Aaron J., Wothke, Aljoscha, Zarza-Gonzâlez, Esteban, and Cinner, Joshua E. (2020) Global status and conservation potential of reef sharks. Nature, 583. pp. 801-803.

Hicks, Christina C., Cohen, Philippa J., Graham, Nicholas A.J., Nash, Kirsty L., Allison, Edward H., D'Lima, Coralie, Mills, David J., Roscher, Matthew, Thilsted, Shakuntala H., Thorne-Lyman, Andrew L., and MacNeil, Aaron (2019) Harnessing global fisheries to tackle micronutrient deficiencies. Nature, 574 (7776). pp. 95-98.

Matthews, Samuel A., Mellin, Camille, MacNeil, Aaron, Heron, Scott F., Skirving, William, Puotinen, Marji, Devlin, Michelle J., and Pratchett, Morgan (2019) High-resolution characterization of the abiotic environment and disturbance regimes on the Great Barrier Reef, 1985–2017. Ecology, 100 (2). e02574.

Graham, Nicholas A.J., Wilson, Shaun K., Carr, Peter, Hoey, Andrew S., Jennings, Simon, and MacNeil, M. Aaron (2018) Seabirds enhance coral reef productivity and functioning in the absence of invasive rats. Nature, 559. pp. 250-253.

Cinner, Joshua E., Maire, Eva, Huchery, Cindy, MacNeil, M. Aaron, Graham, Nicholas A.J., Mora, Camilo, McClanahan, Tim R., Barnes, Michele, Kittinger, John N., Hicks, Christina C., D'Agata, Stephanie, Hoey, Andrew S., Gurney, Georgina G., Feary, David A., Williams, Ivor D., Kulbicki, Michel, Vigliola, Laurent, Wantiez, Laurent, Edgar, Graham J., Stuart-Smith, Rick D., Sandin, Stuart A., Green, Alison, Hardt, Marah J., Beger, Maria, Friedlander, Alan M., Wilson, Shaun, Brokovich, Eran, Brooks, Andrew J., Cruz-Motta, Juan J., Booth, David J., Chabanet, Pascal, Gough, Charlotte, Tupper, Mark, Ferse, Sebastian C.A., Sumaila, U. Rashid, Pardede, Shinta, and Mouillot, David (2018) Gravity of human impacts mediates coral reef conservation gains. Proceedings of the National Academy of Sciences of the United States of America, 115 (27). E6116-E6125.

Hempson, Tessa N., Graham, Nicholas A.J., MacNeil, M. Aaron, Hoey, Andrew S., and Wilson, Shaun (2018) Ecosystem regime shifts disrupt trophic structure. Ecological Applications, 28 (1). pp. 191-200.

Hempson, Tessa N., Graham, Nicholas A.J., MacNeil, M. Aaron, Hoey, Andrew S., and Almany, Glenn R. (2018) Mesopredator trophodynamics on thermally stressed coral reefs. Coral Reefs, 37 (1). pp. 135-144.

Hempson, Tessa N., Graham, Nicholas A.J., MacNeil, M. Aaron, Bodin, Nathalie, and Wilson, Shaun K. (2018) Regime shifts shorten food chains for mesopredators with potential sublethal effects. Functional Ecology, 32 (3). pp. 820-830.

Wilson, S.K., Graham, N.A.J., Holmes, T.H., MacNeil, M.A., and Ryan, N.M. (2018) Visual versus video methods for estimating reef fish biomass. Ecological Indicators, 85. pp. 146-152.

MacNeil, M. Aaron, Chong-Seng, Karen M., Pratchett, Deborah J., Thompson, Cassandra A., Messmer, Vanessa, and Pratchett, Morgan S. (2017) Age and growth of an outbreaking Acanthaster cf. solaris population within the Great Barrier Reef. Diversity, 9 (1). 18.

Graham, Nicholas A.J., McClanahan, Tim R., MacNeil, M. Aaron, Wilson, Shaun K., Cinner, Joshua E., Huchery, Cindy, and Holmes, Thomas H. (2017) Human disruption of coral reef trophic structure. Current Biology, 27 (2). pp. 231-236.

Cinner, Joshua E., Huchery, Cindy, MacNeil, M. Aaron, Graham, Nicholas A.J., McClanahan, Tim R., Maina, Joseph, Maire, Eva, Kittinger, John N., Hicks, Christina C., Mora, Camilo, Allison, Edward H., D'Agata, Stephanie, Hoey, Andrew, Feary, David A., Crowder, Larry, Williams, Ivor D., Kulbicki, Michel, Vigliola, Laurent, Wantiez, Laurent, Edgar, Graham, Stuart-Smith, Rick D., Sandin, Stuart A., Green, Alison L., Hardt, Marah J., Beger, Maria, Friedlander, Alan, Campbell, Stuart J., Holmes, Katherine E., Wilson, Shaun, Brokovich, Eran, Brooks, Andrew J., Cruz-Motta, Juan J., Booth, David J., Chabanet, Pascale, Gough, Charlie, Tupper, Mark, Ferse, Sebastian C.A., Sumaila, U. Rashid, and Mouillot, David (2016) Bright spots among the world's coral reefs. Nature, 535 (7612). pp. 416-419.

Mellin, C., Lurgi, M., Matthews, S., MacNeil, M.A., Caley, M.J., Bax, N., Przeslawski, R., and Fordham, D.A. (2016) Forecasting marine invasions under climate change: biotic interactions and demographic processes matter. Biological Conservation, 204 (Part B). pp. 459-467.

MacNeil, M. Aaron, Mellin, Camille, Pratchett, Morgan S., Hoey, Jessica, Anthony, Kenneth R.N., Cheal, Alistair J., Miller, Ian, Sweatman, Hugh, Cowan, Zara L., Taylor, Sascha, Moon, Steven, and Fonnesbeck, Chris J. (2016) Joint estimation of crown of thorns (Acanthaster planci) densities on the Great Barrier Reef. PeerJ, 4. e2310. pp. 1-17.

Emslie, Michael J., Logan, Murray, Williamson, David H., Ayling, Anthony M., MacNeil, M. Aaron, Ceccarelli, Daniela, Cheal, Alistair J., Evans, Richard D., Johns, Kerryn A, Jonker, Michelle J., Miller, Ian R., Osborne, Kate, Russ, Garry R., and Sweatman, Hugh P.A. (2015) Expectations and outcomes of reserve network performance following re-zoning of the Great Barrier Reef Marine Park. Current Biology, 25 (8). pp. 983-992.

Cinner, Joshua E., Graham, Nicholas A.J., Huchery, Cindy, and Macneil, M. Aaron (2013) Global effects of local human population density and distance to markets on the condition of coral reef fisheries. Conservation Biology, 27 (3). pp. 453-458.

Cinner, Joshua E., MacNeil, M. Aaron, Basurto, Xavier, and Gelcich, Stefan (2013) Looking beyond the fisheries crisis: Cumulative learning from small-scale fisheries through diagnostic approaches. Global Environmental Change, 23 (6). pp. 1359-1365.

McClanahan, Tim R., Graham, Nicholas A.J., Calnan, Jacqulyn M., and MacNeil, M. Aaron (2007) Towards pristine biomass: reef fish recovery in coral reef marine protected areas in Kenya. Ecological Applications, 17 (4). pp. 1055-1067.