Mangiola, Stefano, Young, Neil D., Korhonen, Pasi, Mondal, Alinda, Scheerlinck, Jean-Pierre, Sternberg, Paul W., Cantacessi, Cinzia, Hall, Ross S., Jex, Aaron R., and Gasser, Robin B. (2013) Getting the most out of parasitic helminth transcriptomes using HelmDB: implications for biology and biotechnology. Biotechnology Advances, 31 (8). pp. 1109-1119.

Schwarz, Erich M., Korhonen, Pasi K., Campbell, Bronwyn E., Young, Neil D., Jex, Aaron R., Jabbar, Abdul, Hall, Ross S., Mondal, Alinda, Howe, Adina C., Pell, Jason, Hofmann, Andreas, Boag, Peter R., Zhu, Xing-Quan, Gregory, T. Ryan, Loukas, Alex, Williams, Brian A., Antoshechkin, Igor, Brown, C. Titus, Sternberg, Paul W., and Gasser, Robin B. (2013) The genome and developmental transcriptome of the strongylid nematode Haemonchus contortus. Genome Biology, 14 (8). R89. pp. 1-18.

Cantacessi, C., Campbell, B.E., Jex, A.R., Young, N.D., Hall, R.S., Ranganathan, S., and Gasser, R.B. (2012) Bioinformatics meets parasitology. Parasite Immunology, 34 (5). pp. 265-275.

Jabbar, Abdul, Khoon, Avalene T.W., Hui, Teo X. , Schaeffner, Bjoern C., Jex, Aaron R., Nolan, Matthew J., Lopata, Andreas, Gasser, Robin B., and Beveridge, Ian (2012) Mutation scanning-based analysis of anisakid larvae from Sillago flindersi from Bass Strait, Australia. Electrophoresis, 33 (3). pp. 499-505.

Young, Neil D., Jex, Aaron R., Lo, Bo, Liu, Shiping, Yang, Linfeng, Xiong, Zijun, Li, Yingrui, Cantacessi, Cinzia, Hall, Ross S., Xu, Xun, Chen, Fangyuan, Wu, Xuan, Zerlotini, Adhemar, Oliveira, Guilherme, Hofmann, Andreas, Zhang, Guojie, Fang, Xiaodong, Kang, Yi, Campbell, Bronwyn E., Loukas, Alex, Ranganathan, Shoba, Rollinson, David, Rinaldi, Gabriel, Brindley, Paul J., Yang, Huanming, Wang, Jun, Wang, Jian, and Gasser, Robin B. (2012) Whole-genome sequence of Schistosoma haematobium. Nature Genetics, 44 (2). pp. 221-225.

Cantacessi, Cinzia, Gasser, Robin B., Strube, Christina, Schnieder, Thomas, Jex, Aaron R., Hall, Ross S., Campbell, Bronwyn E., Young, Neil D., Ranganathan, Shoba, Sternberg, Paul W., and Mitreva, Makedonka (2011) Deep insights into Dictyocaulus viviparus transcriptomes provides unique prospects for new drug targets and disease intervention. Biotechnology Advances, 29 (3). pp. 261-271.

Jex, Aaron R., Liu, Shiping, Li, Bo, Young, Neil D., Hall, Ross S., Li, Yingrui, Yang, Lifeng, Zeng, Na, Xu, Xun, Xiong, Zijun, Chen, Fangyuan, Wu, Xuan, Zhang, Guojie, Fang, Xiaodong, Kang, Yi, Anderson, Garry A., Harris, Todd W., Campbell, Bronwyn E., Vlaminck, Johnny, Wang, Tao, Cantacessi, Cinzia, Schwarz, Erich M., Ranganathan, Shoba, Geldhof, Peter, Nejsum, Peter, Sternberg, Paul W., Yang, Huanming, Wang, Jun, Wang, Jian, and Gasser, Robin B. (2011) Ascaris suum draft genome. Nature, 479. pp. 529-533.

Young, Neil D., Jex, Aaron R., Cantacessi, Cinzia, Hall, Ross S., Campbell, Bronwyn E., Spithill, Terence W., Tangkawattana, Sirikachorn, Tangkawattana, Prasarn, Laha, Thewarach, and Gasser, Robin B. (2011) A portrait of the transcriptome of the neglected trematode, Fasciola gigantica: biological and biotechnological implications. PLoS Neglected Tropical Disease, 5 (2). e1004. pp. 1-12.

Jex, Aaron R., Smith, Huw V., Nolan, Matthew J., Campbell, Bronwyn E., Young , Neil D., Cantacessi, Cinzia, and Gasser, Robin B. (2011) Cryptic parasite revealed: improved prospects for treatment and control of human cryptosporidiosis through advanced technologies. In: Rollinson, D., and Hay, S.I., (eds.) Advances in Parasitology. Elsevier, pp. 141-173.

Cantacessi, Cinzia, Young, Neil D., Nejsum, Peter, Jex, Aaron R., Campbell, Bronwyn E., Hall, Ross S., Thamsborg, Stig M., Scheerlinck, Jean-Peirre, and Gasser, Robin B. (2011) The transcriptome of Trichuris suis: first molecular insights into a parasite with curative properties for key immune diseases of humans. PLoS ONE, 6 (8). e23590. pp. 1-10.

Young, Neil D., Hall, Ross S., Jex, Aaron R., Cantacessi, Cinzia, and Gasser, Robin B. (2010) Elucidating the transcriptome of Fasciola hepatica: a key to fundamental and biotechnological discoveries for a neglected parasite. Biotechnology Advances, 28 (2). pp. 222-231.

Young, Neil D., Jex, Aaron R., Cantacessi, Cinzia, Campbell, Bronwyn E., Laha, Thewarach, Sohn, Woon-Mok, Sripa, Banchob , Loukas, Alex, Brindley, Paul J., and Gasser, Robin B. (2010) Progress on the transcriptomics of carcinogenic liver flukes of humans - unique biological and biotechnological prospects. Biotechnology Advances, 28 (6). pp. 859-870.

Young, Neil D., Campbell, Bronwyn E., Hall, Ross S., Jex, Aaron R., Cantacessi, Cinzia , Laha, Thewarach, Sohn, Woon-Mok , Sripa, Banchob , Loukas, Alex, Brindley, Paul J., and Gasser, Robin B. (2010) Unlocking the transcriptomes of two carcinogenic parasites, Clonorchis sinensis and Opisthorchis viverrini. PLoS Neglected Tropical Diseases, 4 (6). e719. pp. 1-14.

Cantacessi, Cinzia , Mitreva, Makedonka , Jex, Aaron R., Young, Neil D., Campbell, Bronwyn E., Hall, Ross S., Doyle, Maria A., Ralph, Stuart A., Rabelo, Elida M., Ranganathan, Shoba , Sternberg, Paul W., Loukas, Alex, and Gasser, Robin B. (2010) Massively parallel sequencing and analysis of the Necator americanus transcriptome. PLoS Neglected Tropical Diseases, 4 (5). e684. pp. 1-11.

Cantacessi, Cinzia, Campbell, Bronwyn E., Young, Neil D., Jex, Aaron R., Hall, Ross S., Presidente, Paul J.A., Zawadzki, Jodi L., Zhong, Weiwei, Aleman-Meza, Boanerges, Loukas, Alex, Sternberg, Paul W., and Gasser, Robin B. (2010) Differences in transcription between free-living and CO2-activated third-stage larvae of Haemonchus contortus. BMC Genomics, 11. 266. pp. 1-14.

Cantacessi, Cinzia, Mitreva, Makedonka, Campbell, Bronwyn E., Hall, Ross S., Young , Neil D., Jex, Aaron R., Ranganathan, Shoba, and Gasser, Robin B. (2010) First transcriptomic analysis of the economically important parasitic nematode, Trichostrongylus colubriformis, using a next-generation sequencing approach. Infection, Genetics and Evolution, 10 (8). pp. 1199-1207.

Cantacessi, Cinzia, Jex, Aaron R., Hall, Ross S., Young, Neil D., Campbell, Bronwyn E., Joachim, Anja, Nolan, Matthew J., Abubucker, Sahar, Sternberg, Paul W., Ranganatha, Shoba, Mitreva , Makedonka, and Gasser, Robin B. (2010) A practical, bioinformatic workflow system for large datasets generated by next-generation sequencing. Nucleic Acids Research, 38 (17). e171. pp. 1-12.

Cantacessi, C., Zou, F.C., Hall, R.S., Zhong, W., Jex, A.R., Campbell, B.E., Ranganathan, S., Sternberg, P.W., Zhu, X.Q., and Gasser, R.B. (2009) Bioinformatic analysis of abundant, gender-enriched transcripts of adult Ascaris suum (Nematoda) using a semi-automated workflow platform. Molecular and Cellular Probes, 23 (5). pp. 205-217.