Mason, Benjamin, Hayward, David C., Moya, Aurelie, Cooke, Ira, Sorenson, Alanna, Brunner, Ramona, Andrade Rodriguez, Natalia, Huerlimann, Roger, Bourne, David G., Schaeffer, Patrick, Grinblat, Mila, Ravasi, Timothy, Ueda, Nobuo, Tang, Sen-Lin, Ball, Eldon E., and Miller, David J. (2024) Microbiome manipulation by corals and other Cnidaria via quorum quenching. Current Biology, 34. pp. 3226-3232.

Ying, Hua, Hayward, David C., Klimovich, Alexander, Bosch, Thomas C.U., Baldassarre, Laura, Neeman, Teresa, Foret, Sylvain, Huttley, Gavin, Reitzel, Adam M., Fraune, Sebastian, Ball, Eldon E., and Miller, David (2022) The Role of DNA Methylation in Genome Defense in Cnidaria and Other Invertebrates. Molecular Biology and Evolution, 39 (2). msac018.

Ball, Eldon E., Hayward, David C., Bridge, Tom C.L., and Miller, David J. (2021) Acropora - The most-studied coral genus. In: Boutet, Agnès, and Schierwater, Bernd, (eds.) Handbook of Marine Model Organisms in Experimental Biology: Established and Emerging. CRC Press, Boca Raton, FL, USA, pp. 173-193.

Mason, B., Cooke, I., Moya, A., Augustin, R., Lin, M.F., Satoh, N., Bosch, T.C.G., Bourne, D.G., Hayward, D.C., Andrade, N., Forêt, S., Ying, H., Ball, E.E., and Miller, D.J. (2021) AmAMP1 from Acropora millepora and damicornin define a family of coral-specific antimicrobial peptides related to the Shk toxins of sea anemones. Developmental and Comparative Immunology, 114. 103866.

Bongaerts, Pim, Cooke, Ira R., Ying, Hua, Wels, Dagmar, den Haan, Stijn, Hernandez-Agreda, Alejandra, Brunner, Christopher A., Dove, Sophie, Englebert, Norbert, Eyal, Gal, Foret, Sylvain, Grinblat, Mila, Hay, Kyra B., Harii, Saki, Hayward, David C., Lin, Yu, Morana, Mihaljevi C., Moya, Aurelie, Muir, Paul, Sinniger, Frederic, Smallhorn-West, Patrick, Torda, Gergely, Ragan, Mark A., van Oppen, Madeleine J.M., and Hoegh-Guldberg, Ove (2021) Morphological stasis masks ecologically divergent coral species on tropical reefs. Current Biology, 31 (11). 2286-2298.e8.

Suryawanshi, Ashwini, Schaefer, Karolin, Holz, Oliver, Apel, David, Lange, Ellen, Hayward, David C., Miller, David J., and Hassel, Monika (2020) What lies beneath: Hydra provides cnidarian perspectives into the evolution of FGFR docking proteins. Development Genes and Evolution, 230. pp. 227-238.

Moya, Aurelie, Sakamaki, Kazuhiro, Mason, Benjamin M., Huisman, Lotte, Forêt, Sylvain, Weiss, Yvonne, Bull, Tara, Tomii, Kentaro, Imai, Kenichiro, Hayward, David C., Ball, Eldon E., and Miller, David J. (2016) Functional conservation of the apoptotic machinery from coral to man: the diverse and complex Bcl-2 and caspase repertoires of Acropora millepora. BMC Genomics, 17. 62. pp. 1-20.

Moya, A., Huisman, L., Fêret, S., Gattuso, J-P., Hayward, D.C., Ball, E.E., and Miller, D.J. (2015) Rapid acclimation of juvenile corals to CO2-mediated acidification by upregulation of heat shock protein and Bcl-2 genes. Molecular Ecology, 24 (2). pp. 438-452.

Hayward, David C., Grasso, Lauretta C., Saint, Robert, Miller, David J., and Ball, Eldon E. (2015) The organizer in evolution–gastrulation and organizer gene expression highlight the importance of Brachyury during development of the coral, Acropora millepora. Developmental Biology, 399 (2). pp. 337-347.

Weiss, Yvonne, Forêt, Sylvain, Hayward, David C., Ainsworth, Tracy, King, Rob, Ball, Eldon E., and Miller, David J. (2013) The acute transcriptional response of the coral Acropora millepora to immune challenge: expression of GiMAP/IAN genes links the innate immune responses of corals with those of mammals and plants. BMC Genomics, 14. 400. pp. 1-12.

Moya, A., Huisman, L., Ball, E.E., Hayward, D.C., Grasso, L.C., Chua, C.M., Woo, H.N., Gattuso, J.-P, Forêt, S., and Miller, D.J. (2012) Whole transcriptome analysis of the coral Acropora millepora reveals complex responses to CO2-driven acidification during the initiation of calcification. Molecular Ecology, 21 (10). pp. 2440-2454.

Attenborough, Rosalind M.F., Hayward, David C., V. Kitahara, Marcelo, Miller, David J., and Ball, Eldon E. (2012) A "neural" enzyme in nonbilaterian animals and algae: preneural origins for peptidylglycine α-amidating monooxygenase. Molecular Biology and Evolution, 29 (10). pp. 3095-3109.

Hayward, David C., Hetherington, Suzannah, Behm, Carolyn A., Grasso, Lauretta C., Forêt, Sylvain, Miller, David J., and Ball, Eldon E. (2011) Differential gene expression at coral settlement and metamorphosis: a subtractive hybridization study. PLoS ONE, 6 (10). e26411. pp. 1-18.

Grasso, L.C., Negri, A.P., Fôret, S., Saint, R., Hayward, D.C., Miller, D.J., and Ball, E.E. (2011) The biology of coral metamorphosis: molecular responses of larvae to inducers of settlement and metamorphosis. Developmental Biology, 353 (2). pp. 411-419.

Forêt, Sylvain, Seneca, François, De Jong, Danielle, Bieller, Annette, Hemmrich, Georg, Augustin, Rene, Hayward, David C., Ball, Eldon E., Bosch, Thomas C.G., Agata, Kiyokazu, Hassel, Monika, and Miller, David J. (2011) Phylogenomics reveals an anomalous distribution of USP genes in metazoans. Molecular Biology and Evolution, 28 (1). pp. 153-161.

Ball, Eldon E., de Jong, Danielle M., Schierwater, Bernd, Shinzato, Chuya, Hayward, David C., and Miller, David J. (2011) Cnidarian gene expression patterns and the origins of bilaterality – are cnidarians reading the same game plan as "higher" animals? In: DeSalle, Rob, and Schierwater, Bernd, (eds.) Key Transitions in Animal Evolution. Science Publishers, Enfield, NH, USA, pp. 197-216.

Forêt, Sylvain, Knack, Brent, Houliston, Evelyn, Momose, Tsuyoshi, Manuel, Michael, Quéinnec, Eric, Hayward, David C., Ball, Eldon E., and Miller, David J. (2010) New tricks with old genes: the genetic bases of novel cnidarian traits. Trends in Genetics, 26 (4). pp. 154-158.

Reyes-Bermudez, Alejandro, Lin, Zhiyi, Hayward, David C., Miller, David J., and Ball, Eldon E. (2009) Differential expression of three galaxin-related genes during settlement and metamorphosis in the scleractinian coral Acropora millepora. BMC Evolutionary Biology, 9 (178). - .

Shinzato, Chuya, Iguchi, Akira, Hayward, David C., Technau, Ulrich, Ball, Eldon E., and Miller, David J. (2008) Sox genes in the coral Acropora millepora: divergent expression patterns reflect differences in developmental mechanisms within the Anthozoa. BMC Evolutionary Biology, 8. .

Knack, Brent A., Iguchi, Akira, Shinzato, Chuya, Hayward, David C., Ball, Eldon E., and Miller, David J. (2008) Unexpected diversity of cnidarian integrins: expression during coral gastrulation. BMC Evolutionary Biology, 8. - .

Grasso, Lauretta, Maindonald, John, Rudd, Stephen, Hayward, David C., Saint, Robert, Miller, David J., and Ball, Eldon E. (2008) Microarray analysis identifies candidate genes for key roles in coral development. BMC Genomics, 9. pp. 540-557.

Ball, Eldon E., de Jong, Danielle M., Schierwater, Bernd, Shinzato, Chuya, Hayward, David C., and Miller, David J. (2007) Implications of cnidarian gene expression patterns for the origins of bilaterality - is the glass half full or half empty? Integrative and Comparative Biology, 47. pp. 701-711.

Levy, O., Appelbaum, L., Leggat, W., Gothlif, Y., Hayward, D.C., Miller, D.J., and Hoegh-Guldberg, O. (2007) Light-responsive cryptochromes from a simple multicellular animal, the coral Acropora millepora. Science, 318 (5849). pp. 467-470.

Forêt, S., Kassahn, K.S., Grasso, L.C., Hayward, D.C., Iguchi, A., Ball, E.E., and Miller, D.J. (2007) Genomic and microarray approaches to coral reef conservation biology. Coral Reefs, 26 (3). pp. 475-486.

Antil, Michel, Hayward, David C., Miller, David J., and Ball, Eldon E. (2007) Sequence and expression of four coral G protein-coupled receptors distinct from all classifiable members of the rhodopsin family. Gene, 392 (1-2). pp. 14-21.

Miller, David J., Hemmrich, Georg, Ball, Eldon E., Hayward, David C., Khalturin, Konstantin, Funayama, Noriko, Agata, Kiyokazu, and Bosch, Thomas C.G. (2007) The innate immune repertoire in Cnidaria - ancestral complexity and stochastic gene loss. Genome Biology, 8 (4). R59.1-R59.13.

de Jong, Danielle M., Hislop, Nikki R., Hayward, David C., Reece-Hoyes, John S., Pontynen, Patricia C., Ball, Eldon, and Miller, David J. (2006) Components of both major axial patterning systems of the Bilateria are differentially expressed along the primary axis of a 'radiate' animal, the anthozoan cnidarian Acropora millepora. Developmental Biology, 298 (2). pp. 632-643.

Technau, Ulrich, Rudd, Stephen, Maxwell, Peter, Gordon, Paul M.K., Saina, Michael, Grasso, Lauretta C., Hayward, David C., Sensen, Christoph W., Saint, Robert, Holstein, Thomas W., Ball, Eldon E., and Miller, David J. (2005) Maintenance of ancestral complexity and non-metazoan genes in two basal cnidarians. Trends in Genetics, 21 (12). pp. 633-639.

Hislop, Nikki R., de Jong, Danielle, Hayward, David C., Ball, Eldon E., and Miller, David J. (2005) Tandem organization of independently duplicated homeobox genes in the basal cnidarian Acropora millepora. Development Genes and Evolution, 215 (5). pp. 268-273.

Ball, Eldon E., Hayward, David C., Saint, Robert, and Miller, David J. (2004) A simple plan: cnidarians and the origins of developmental mechanisms. Nature Reviews: Genetics, 5 (8). pp. 567-577.

Hayward, David C., Miller, David J., and Ball, Eldon E. (2004) Snail expression during embryonic development of the coral Acropora: blurring the diploblast/triplobalst divide. Development Genes and Evolution, 214 (5). pp. 257-260.

Miller, Steven W., Hayward, David C., Bunch, Thomas A., Miller, David J., Ball, Eldon E., Bardwell, Vivian J., Zarkower, David, and Brower, Danny L. (2003) A DM domain protein from a coral, Acropora millepora, homologous to proteins important for sex determination. Evolution & Development, 5 (3). pp. 251-258.

Hayward, David C., Samuel, Gabrielle, Pontynen, Patricia C., Catmull, Julian, Saint, Robert, Miller, David J., and Ball, Eldon E. (2002) Localized expression of a dpp/BMP2/4 ortholog in a coral embryo. National Academy of Sciences. Proceedings, 99 (12). pp. 8106-8111.

Ball, Eldon E., Hayward, David C., Reece-Hoyes, John S., Hislop, Nikki R., Samuel, Gabrielle, Saint, Robert, Harrison, Peter L., and Miller, David J. (2002) Coral development: from classical embryology to molecular control. International Journal of Developmental Biology, 46 (4). pp. 671-678.

Ball, E.E, Hayward, D.C., Catmull, J., Reece-Hoyes, J.S., Hislop, N.R., Harrison, P.L., and Miller, D.J. (2002) Molecular control of development in the reef coral, Acropora millepora. In: Proceedings of the 9th International Coral Reef Symposium (1) pp. 395-401. From: 9th International Coral Reef Symposium: World Coral Reefs in the New Millenium, 23-27 October 2000, Bali, Indonesia.

Hayward, David C., Catmull, Julian, Reece-Hoyes, John S., Berghammer, Heinrich, Dodd, Heather, Hann, Steven J., Miller, David J., and Ball, Eldon E. (2001) Gene structure and larval expression of cnox-2Am from the coral Acropora millepora. Development Genes and Evolution, 211 (1). pp. 10-19.

Miller, David J., Hayward, David C., Reece-Hoyes, John S., Scholten, Ingo, Catmull, Julian, Gehring, Walter J., Callaerts, Patrick, Larsen, Jill E., and Ball, Eldon E. (2000) Pax gene diversity in the basal cnidarian Acropora millepora (Cnidaria, Anthozoa): Implications for the evolution of the Pax gene family. Proceedings of the National Academy of Sciences of the United States of America, 97 (7). pp. 4475-4480.