Nguyen, Thi H.O., Rowntree, Louise C., Petersen, Jan, Chua, Brendon Y., Hensen, Luca, Kedzierski, Lukasz, van de Sandt, Carolien E., Chaurasia, Priyanka, Tan, Hyon Xhi, Habel, Jennifer R., Zhang, Wuji, Allen, Lilith F., Earnest, Linda, Mak, Kai Yan, Juno, Jennifer A., Wragg, Kathleen, Mordant, Francesca L., Amanat, Fatima, Krammer, Florian, Mifsud, Nicole A., Doolan, Denise L., Flanagan, Katie L., Sonda, Sabrina, Kaur, Jasveen, Wakim, Linda M., Westall, Glen P., James, Fiona, Mouhtouris, Effie, Gordon, Claire L., Holmes, Natasha E., Smibert, Olivia C., Trubiano, Jason A., Cheng, Allen C., Harcourt, Peter, Clifton, Patrick, Crawford, Jeremy Chase, Thomas, Paul G., Wheatley, Adam K., Kent, Stephen J., Rossjohn, Jamie, Torresi, Joseph, and Kedzierska, Katherine (2021) CD8+ T cells specific for an immunodominant SARS-CoV-2 nucleocapsid epitope display high naive precursor frequency and TCR promiscuity. Immunity, 54 (5). 1066-1082.e5.

Habel, Jennifer H., Nguyen, Thi H.O., van de Sandt, Carolien E., Juno, Jennifer A., Chaurasia, Priyanka, Wragg, Kathleen, Koutsakos, Marios, Hensen, Luca, Jia, Xiaoxiao, Chua, Brendon, Zhang, Wuji, Tan, Hyon-Xhi, Flanagan, Katie L., Doolan, Denise L., Torresi, Joseph, Chen, Weisan, Wakim, Linda M., Cheng, Allen C., Doherty, Peter C., Petersen, Jan, Rossjohn, Jamie, Wheatley, Adam K., Kent, Stephen J., Rowntree, Louise C., and Kedzierska, Katherine (2020) Suboptimal SARS-CoV-2-specific CD8(+) T cell response associated with the prominent HLA-A*02:01 phenotype. Proceedings of the National Academy of Sciences of the United States of America, 117 (39). pp. 24384-24391.

Cole, David K., Bulek, Anna M., Dolton, Garry, Schauenberg, Andrea J., Szomolay, Barbara, Rittase, William, Trimby, Andrew, Jothikumar, Prithiviraj, Fuller, Anna, Skowera, Ania, Rossjohn, Jamie, Zhu, Cheng, Miles, John J., Peakman, Mark, Wooldridge, Linda, Rizkallah, Pierre J., and Sewell, Andrew K. (2016) Hotspot autoimmune T cell receptor binding underlies pathogen and insulin peptide cross-reactivity. Journal of Clinical Investigation, 126 (6). pp. 2191-2204.

Valkenburg, Sophie A., Josephs, Tracy M., Clemens, E. Bridie, Grant, Emma J., Nguyen, Thi H.O., Wang, George C., Price, David A., Miller, Adrian, Tong, Steven Y.C., Thomas, Paul G., Doherty, Peter C., Rossjohn, Jamie, Gras, Stephanie, and Kedzierska, Katherine (2016) Molecular basis for universal HLA-A*0201–restricted CD8+ T-cell immunity against influenza viruses. Proceedings of the National Academy of Sciences of the United States of America, 113 (116). pp. 4440-4445.

Clemens, E. Bridie, Grant, Emma J., Wang, Zhongfang, Gras, Stephanie, Tipping, Peta, Rossjohn, Jamie, Miller, Adrian, Tong, Steven Y.C., and Kedzierska, Katherine (2016) Towards identification of immune and genetic correlates of severe influenza disease in Indigenous Australians. Immunology and Cell Biology, 94 (4). pp. 367-377.

Rist, Melissa J., Hibbert, Kelly M., Croft, Nathan P., Smith, Corey, Neller, Michelle A., Burrows, Jacqueline M., Miles, John J., Purcell, Anthony W., Rossjohn, Jamie, Gras, Stephanie, and Burrows, Scott R. (2015) T cell cross-reactivity between a highly immunogenic EBV epitope and a self-peptide naturally presented by HLA-B*18:01⁺ cells. Journal of Immunology, 194 (10). pp. 4668-4675.

Miles, John J., McCluskey, James, Rossjohn, Jamie, and Gras, Stephanie (2015) Understanding the complexity and malleability of T-cell recognition. Immunology and Cell Biology, 93 (5). pp. 433-441.

Rossjohn, Jamie, Gras, Stephanie, Miles, John J., Turner, Stephen J., Godfrey, Dale I., and McCluskey, James (2015) T cell antigen receptor recognition of antigen-presenting molecules. Annual Review of Immunology, 33. pp. 169-200.

Brennan, Rebekah M., Burrows, Jacqueline M., Elliott, Thomas, Neller, Michelle A., Gras, Stephanie, Rossjohn, Jamie, Miles, John J., and Burrows, Scott J. (2014) Missense single nucleotide polymorphisms in the human T cell receptor loci control variable gene usage in the T cell repertoire. British Journal of Haematology, 166 (1). pp. 148-152.

Liu, Yu Chih, Chen, Zhenjun, Neller, Michelle A., Miles, John J., Purcell, Anthony W., McCluskey, James, Burrows, Scott R., Rossjohn, Jamie, and Gras, Stephanie (2014) A molecular basis for the interplay between T cells, viral mutants, and human leukocyte antigen micropolymorphism. Journal of Biological Chemistry, 289 (24). pp. 16688-16698.

Smith, Corey, Gras, Stephanie, Brennan, Rebekah M., Bird, Nicola L., Valkenburg, Sophie A., Twist, Kelly-Anne, Burrows, Jacqueline M., Miles, John J., Chambers, Daniel, Bell, Scott, Campbell, Scott, Kedzierska, Katherine, Burrows, Scott R., Rossjohn, Jamie, and Khanna, Rajiv (2014) Molecular imprint of exposure to naturally occurring genetic variants of human cytomegalovirus on the T cell repertoire. Scientific Reports, 4. 3993. pp. 1-10.

Quinones-Parra, Sergio, Grant, Emma, Loh, Liyen, Nguyen, Thi H.O., Campbell, Kristy-Anne, Tong, Steven Y.C., Miller, Adrian, Doherty, Peter C., Vijaykrishna, Dhanasekaran, Rossjohn, Jamie, Gras, Stephanie, and Kedzierska, Katherine (2014) Preexisting CD8+ T-cell immunity to the H7N9 influenza A virus varies across ethnicities. Proceedings of the National Academy of Sciences of the United States of America, 111 (3). pp. 1049-1054.

Nivarthi, Usha K., Gras, Stephanie, Kjer-Nielsen, Lars, Berry, Richard, Lucet, Isabelle S., Miles, John J., Tracy, Samantha L., Purcell, Anthony W., Bowden, David S., Hellard, Margaret, Rossjohn, Jamie, McCluskey, James, and Bharadwaj, Mandvi (2014) An extensive antigenic footprint underpins immunodominant TCR adaptability against a hypervariable viral determinant. Journal of Immunology, 193 (11). pp. 5402-5413.

Rist, Melissa J., Theodossis, Alex, Croft, Nathan P., Neller, Michelle A., Welland, Andrew, Chen, Zhenjun, Sullivan, Lucy C., Burrows, Jacqueline M., Miles, John J., Brennan, Rebekah M., Gras, Stephanie, Khanna, Rajiv, Brooks, Andrew G., McCluskey, James, Purcell, Anthony W., Rossjohn, Jamie, and Burrows, Scott R. (2013) HLA peptide length preferences control CD8+ T cell responses. Journal of Immunology, 191 (2). pp. 561-571.

Patel, Onisha, Kjer-Nielsen, Lars, Le Nours, Jérôme, Eckle, Sidonia B.G., Birkinshaw, Richard, Beddoe, Travis, Corbett, Alexandra J., Liu, Ligong, Miles, John, Meehan, Bronwyn, Reantragoon, Rangsima, Sandoval-Romero, Maria L., Sullivan, Lucy C., Brooks, Andrew G., Chen, Zhenjun, Fairlie, David P., McCluskey, James, and Rossjohn, Jamie (2013) Recognition of vitamin B metabolites by mucosal-associated invariant T cells. Nature Communications, 4. 2142. pp. 1-9.

Liu, Yu Chih, Miles, John J., Neller, Michelle A., Gostick, Emma, Price, David A., Purcell, Anthony W., McCluskey, James, Burrows, Scott R., Rossjohn, Jamie, and Gras, Stephanie (2013) Highly divergent T-cell receptor binding modes underlie specific recognition of a bulged viral peptide bound to a human leukocyte antigen class I molecule. Journal of Biological Chemistry, 288 (22). pp. 15442-15454.

Ekeruche-Makinde, Julia, Miles, John J., van den Berg, Hugo A., Skowera, Ania, Cole, David K., Dolton, Garry, Schauenburg, Andrea J.A., Tan, Mai Ping, Pentier, Johanne M., Llewellyn-Lacey, Sian, Miles, Kim M., Bulek, Anna M., Clement, Mathew, Williams, Tamsin, Trimby, Andrew, Bailey, Mick, Rizkallah, Pierre, Rossjohn, Jamie, Peakman, Mark, Price, David A., Burrows, Scott R., Sewell, Andrew K., and Wooldridge, Linda (2013) Peptide length determines the outcome of TCR/peptide-MHCI engagement. Blood, 121 (7). pp. 1112-1123.

Illing, Patricia T., Vivian, Julian P., Dudek, Nadine L., Kostenko, Lyudmila, Chen, Zhenjun, Bharadwaj, Mandvi, Miles, John J., Kjer-Nielsen, Lars, Gras, Stephanie, Williamson, Nicholas A., Burrows, Scott R., Purcell, Anthony W., Rossjohn, Jamie, and McCluskey, James (2012) Immune self-reactivity triggered by drug-modified HLA-peptide repertoire. Nature, 486 (7404). pp. 554-558.

Brennan, Rebekah M., Petersen, Jan, Neller, Michelle A., Miles, John J., Burrows, Jacqueline M., Smith, Corey, McCluskey, James, Khanna, Rajiv, Rossjohn, Jamie, and Burrows, Scott R. (2012) The impact of a large and frequent deletion in the human TCR β locus on antiviral immunity. Journal of Immunology, 188 (6). pp. 2742-2748.

Bulek, Anna M., Cole, David K., Skowera, Ania, Dolton, Garry, Gras, Stephanie, Madura, Florian, Fuller, Anna, Miles, John J., Gostick, Emma, Price, David A., Drijfhout, Jan W., Knight, Robin R., Huang, Guo C., Lissin, Nikolai, Molloy, Peter E., Wooldridge, Linda, Jakobsen, Bent K., Rossjohn, Jamie, Peakman, Mark, Rizkallah, Pierre J., and Sewell, Andrew K. (2012) Structural basis of human β-cell killing by CD8⁺ T cells in Type 1 diabetes. Nature Immunology, 13 (3). pp. 283-289.

Miles, John J., Thammanichanond, Duangtawan, Moneer, Sarah, Nivarthi, Usha K., Kjer-Nielsen, Lars, Tracy, Samantha L., Aitken, Campbell K., Brennan, Rebekah M., Zeng, Weiguang, Marquart, Louise, Jackson, David, Burrows, Scott R., Bowden, David S., Torresi, Joseph, Hellard, Margaret, Rossjohn, Jamie, McCluskey, James, and Bharadwaj, Mandvi (2011) Antigen-driven patterns of TCR bias are shared across diverse outcomes of human hepatitis C virus infection. Journal of Immunology, 186 (2). pp. 901-912.

Gras, Stephanie, Chen, Zhenjun, Miles, John J., Liu, Yu Chih, Bell, Melissa J., Sullivan, Lucy C., Kjer-Nielsen, Lars, Brennan, Rebekah M., Burrows, Jacqueline M., Neller, Michelle A., Khanna, Rajiv, Purcell, Anthony W., Brooks, Andrew G., McCluskey, James, Rossjohn, Jamie, and Burrows, Scott R. (2010) Allelic polymorphism in the T cell receptor and its impact on immune responses. The Journal of Experimental Medicine, 207 (7). pp. 1555-1567.

Burrows, Scott R., Chen, Zhenjun, Archbold, Julia K., Tynan, Fleur E., Beddoe, Travis, Kjer-Nielsen, Lars, Miles, John J., Khanna, Rajiv, Moss, Denis J., Liu, Yu Chih, Gras, Stephanie, Kostenko, Lyudmila, Brennan, Rebekah M., Clements, Craig S., Brooks, Andrew G., Purcell, Anthony W., McCluskey, James, and Rossjohn, Jamie (2010) Hard wiring of T cell receptor specificity for the major histocompatibility complex is underpinned by TCR adaptability. Proceedings of the National Academy of Sciences, 107 (23). pp. 10608-10613.

Bell, Melissa J., Burrows, Jacqueline M., Brennan, Rebekah, Miles, John J., Tellam, Judy, McCluskey, James, Rossjohn, Jamie, Khanna, Rajiv, and Burrows, Scott R. (2009) The peptide length specificity of some HLA class I alleles is very broad and includes peptides of up to 25 amino acids in length. Molecular Immunology, 46 (8-9). pp. 1911-1917.

Archbold, Julia K., Macdonald, Whitney A., Gras, Stephanie, Ely, Lauren K., Miles, John J., Bell, Melissa J., Brennan, Rebekah M., Beddoe, Travis, Wilce, Matthew C.J., Clements, Craig S., Purcell, Anthony W., McCluskey, James, Burrows, Scott R., and Rossjohn, Jamie (2009) Natural micropolymorphism in human leukocyte antigens provides a basis for genetic control of antigen recognition. The Journal of Experimental Medicine, 206 (1). pp. 209-219.

Wynn, Katherine K., Fulton, Zara, Cooper, Leanne, Silins, Sharon L., Gras, Stephanie, Archbold, Julia K., Tynan, Fleur E., Miles, John J., McCluskey, James, Burrows, Scott R., Rossjohn, Jamie, and Khanna, Rajiv (2008) Impact of clonal competition for peptide-MHC complexes on the CD8⁺ T-cell repertoire selection in a persistent viral infection. Blood, 111 (8). pp. 4283-4292.

Burrows, Jacqueline M., Wynn, Katherine K., Tynan, Fleur E., Archbold, Julia, Miles, John J., Bell, Melissa J., Brennan, Rebekah M., Walker, Susan, McCluskey, James, Rossjohn, Jamie, Khanna, Rajiv, and Burrows, Scott R. (2007) The impact of HLA-B micropolymorphism outside primary peptide anchor pockets on the CTL response to CMV. European Journal of Immunology, 37 (4). pp. 946-953.

Tynan, Fleur E., Reid, Hugh H., Kjer-Nielsen, Lars, Miles, John J., Wilce, Matthew C.J., Kostenko, Lyudmila, Borg, Natalie A., Williamson, Nicholas A., Beddoe, Travis, Purcell, Anthony W., Burrows, Scott R., McCluskey, James, and Rossjohn, Jamie (2007) A T cell receptor flattens a bulged antigenic peptide presented by a major histocompatibility complex class I molecule. Nature Immunology, 8 (3). pp. 268-276.

Miles, John J., Borg, Natalie A., Brennan, Rebekah M., Tynan, Fleur E., Kjer-Nielsen, Lars, Silins, Sharon L., Bell, Melissa J., Burrows, Jacqueline, McCluskey, James, Rossjohn, Jamie, and Burrows, Scott R. (2006) TCR genes direct MHC restriction in the potent human T cell response to a class I-bound viral epitope. Journal of Immunology, 177 (10). pp. 6804-6814.

Archbold, Julia K., Macdonald, Whitney A., Miles, John J., Brennan, Rebekah M., Kjer-Nielsen, Lars, McCluskey, James, Burrows, Scott R., and Rossjohn, Jamie (2006) Alloreactivity between disparate cognate and allogeneic pMHC-I complexes is the result of highly focused, peptide-dependent structural mimicry. Journal of Biological Chemistry, 281 (45). pp. 34324-34332.

Wilmann, Pascal G., Battad, Jion, Beddoe, Travis, Olsen, Seth, Smith, Sean C., Dove, Sophie, Devenish, Rodney J., Rossjohn, Jamie, and Prescott, Mark (2006) The 2.0 Å crystal structure of a pocilloporin at pH 3.5: the structural basis for the linkage between color transition and halide binding. Photochemistry and Photobiology, 82 (2). pp. 359-366.

Tynan, Fleur E., Elhassen, Diah, Purcell, Anthony W., Burrows, Jacqueline M., Borg, Natalie A., Miles, John J., Williamson, Nicholas A., Green, Kate A., Tellam, Judy, Kjer-Nielsen, Lars, McCluskey, James, Rossjohn, Jamie, and Burrows, Scott r. (2005) The immunogenicity of a viral cytotoxic T cell epitope is controlled by its MHC-bound conformation. The Journal of Experimental Medicine, 202 (9). pp. 1249-1260.

Miles, John J., Elhassen, Diah, Borg, Natalie A., Silins, Sharon L., Tynan, Fleur E., Burrows, Jacqueline M., Purcell, Anthony W., Kjer-Nielsen, Lars, Rossjohn, Jamie, Burrows, Scott R., and McCluskey, James (2005) CTL recognition of a bulged viral peptide involves biased TCR selection. Journal of Immunology, 175 (6). pp. 3826-3834.

Tynan, Fleur E., Borg, Natalie A., Miles, John J., Beddoe, Travis, El-Hassen, Diah, Silins, Sharon L., van Zuylen, Wendy J.M., Purcell, Anthony W., Kjer-Nielsen, Lars, McCluskey, James, Burrows, Scott R., and Rossjohn, Jamie (2005) High resolution structures of highly bulged viral epitopes bound to major histocompatibility complex class I: implications for T-cell receptor engagement and T-cell immunodominance. Journal of Biological Chemistry, 280 (25). pp. 23900-23909.

Ely, Lauren K., Green, Katherine J., Beddoe, Travis, Clements, Craig S., Miles, John J., Bottomley, Stephen P., Zernich, Danielle, Kjer-Nielsen, Lars, Purcell, Anthony W., McCluskey, James, Rossjohn, Jamie, and Burrows, Scott R. (2005) Antagonism of antiviral and allogeneic activity of a human public CTL clonotype by a single altered peptide ligand: implications for allograft rejection. Journal of Immunology, 174 (9). pp. 5593-5601.

Borg, Natalie A., Ely, Lauren K., Beddoe, Travis, Macdonald, Whitney A., Reid, Hugh H., Clements, Craig S., Purcell, Anthony W., Kjer-Nielsen, Lars, Miles, John J., Burrows, Scott R., McCluskey, James, and Rossjohn, Jamie (2005) The CDR3 regions of an immunodominant T cell receptor dictate the 'energetic landscape' of peptide-MHC recognition. Nature Immunology, 6 (2). pp. 171-180.

Tynan, Fleur E., Burrows, Scott R., Buckle, Ashley M., Clements, Craig S., Borg, Natalie A., Miles, John J., Beddoe, Travis, Whisstock, James C., Wilce, Matthew C., Silins, Sharon L., Burrows, Jacqueline M., Kjer-Nielsen, Lars, Kostenko, Lyudmila, Purcell, Anthony W., McCluskey, James, and Rossjohn, Jamie (2005) T cell receptor recognition of a 'super-bulged' major histocompatibility complex class I–bound peptide. Nature Immunology, 6 (11). pp. 1114-1122.