Cook, P.A., Warnock, B., Gillies, C.L., and Hams, A.B. (2022) Historical abundance and distribution of the native flat oyster (Ostrea angasi) in estuaries of the Great Southern region of Western Australia help to prioritise potential sites for contemporary oyster reef restoration. Marine and Freshwater Research, 73 (1). pp. 48-56.

Cook, Peter G., Shanafield, Margaret, Andersen, Martin S., Bourke, Sarah, Cartwright, Ian, Cleverly, Jamie, Currell, Matthew, Doody, Tanya M., Hofmann, Harald, Hugmann, Rui, Irvine, Dylan J., Jakeman, Anthony, McKay, Jennifer, Nelson, Rebecca, and Werner, Adrian D. (2022) Sustainable management of groundwater extraction: An Australian perspective on current challenges. Journal of Hydrology: Regional Studies, 44. 101262.

Rodellas, Valentí, Stieglitz, Thomas C., Tamborski, Joseph J., van Beek, Pieter, Andrisoa, Aladin, and Cook, Peter G. (2021) Conceptual uncertainties in groundwater and porewater fluxes estimated by radon and radium mass balances. Limnology and Oceanography, 66 (4). pp. 1237-1255.

Manassa, R.P., Smith, T.M., Beardall, J., Keough, M.J., and Cook, P.L.M. (2017) Capacity of a temperate intertidal seagrass species to tolerate changing environmental conditions: Significance of light and tidal exposure. Ecological Indicators, 81. pp. 578-586.

Pettit, Neil E., Naiman, Robert J., Fry, Julia M., Roberts, J. Dale, Close, Paul G., Pusey, Bradley J., Woodall, Geoff S., MacGregor, Colin J., Speldewinde, Peter C., Stewart, Barbara, Dobbs, Rebecca J., Paterson, Harriet L., Cook, Peter, Toussaint, Sandy, Comer, Sarah, and Davies, Peter M. (2015) Environmental change: prospects for conservation and agriculture in a southwest Australia biodiversity hotspot. Ecology and Society, 20 (3). 10.

Nguyen, Tran Hien, Nguyen, H. Le, Nguyen, Thu Yen, Vu, Sinh Nam, Tran, Nhu Duong, Le, T.N., Vien, Quang Mai, Bui, T.C., Le, Huu Tho, Kutcher, Simon, Hurst, Tim P., Duong, T.T.H., Jeffery, Jason A.L., Darbro, Jonathan M., Kay, B.H., Iturbe-Ormaetxe, Iñaki, Popovici, Jean, Montgomery, Brian L., Turley, Andrew P., Zigterman, Flora, Cook, Helen, Cook, Peter E., Johnson, Petrina H., Ryan, Peter A., Paton, Chris J., Ritchie, Scott A., Simmons, Cameron P., O’Neill, Scott L., and Hoffmann, Ary A. (2015) Field evaluation of the establishment potential of wMelPop Wolbachia in Australia and Vietnam for dengue control. Parasites & Vectors, 8 (563). pp. 1-14.

Batlle-Aguilar, J., Harrington, G.A., Leblanc, M., Welch, C., and Cook, P.G. (2014) Chemistry of groundwater discharge inferred from longitudinal river sampling. Water Resources Research, 50 (2). pp. 1550-1568.

Welch, Chani, Harrington, Glenn A., Leblanc, Marc, Batlle-Aguilar, Jordi, and Cook, Peter G. (2014) Relative rates of solute and pressure propagation into heterogeneous alluvial aquifers following river flow events. Journal of Hydrology, 511. pp. 891-903.

Stieglitz, Thomas C., van Beek, Pieter, Souhaut, Marc, and Cook, Peter G. (2013) Karstic groundwater discharge and seawater recirculation through sediments in shallow coastal Mediterranean lagoons, determined from water, salt and radon budgets. Marine Chemistry, 156. pp. 73-84.

Stieglitz, T.C., Hancock, G., Clarke, J., and Cook, P.G. (2011) Radioisotopes and coastal research in the Great Barrier Reef. In: Abstracts from 11th Australasian Environmental Isotopes Conference and 4th Australasian Hydrogeology Research Conference. pp. 106-107. From: 11th Australasian Environmental Isotopes Conference and 4th Australasian Hydrogeology Research Conference, 12-14 July 2011, Cairns, QLD, Australia.

Stieglitz, Thomas C., Cook, Peter G., and Burnett, William C. (2010) Inferring coastal processes from regional-scale mapping of 222Radon and salinity: examples from the Great Barrier Reef, Australia. Journal of Environmental Radioactivity, 101 (7). pp. 544-552.

Hugo, Leon E., Cook, Peter E., Johnson, Petrina H., Rapley, Luke P., Kay, Brian H., Ryan, Peter A., Ritchie, Scott A., and O'Neill, Scott L. (2010) Field validation of a transcriptional assay for the prediction of age of uncaged Aedes aegypti mosquitoes in Northern Australia. PLoS Neglected Tropical Diseases, 4 (2). e608. pp. 1-9.

Stieglitz, T.C., Holliday, D., Ridd, P.V., Cook, P.G., and Read, W.W. (2010) Geological controls and tidal forcing of submarine groundwater discharge from a confined aquifer, Elim Beach, northeast Australia. In: Abstracts from ASLO & NABS 2010 Summer Meeting. p. 1. From: ASLO & NABS: 2010 Summer Meeting, 6 - 11 June 2010, Santa Fe, NM, USA.

Fass, T., Cook, P.G., Stieglitz, T., and Herczeg, A.L. (2007) Development of saline ground water through transpiration of sea water. Ground Water, 45 (6). pp. 703-710.

Cook, Peter E., Hugo, Leon E., Iturbe-Ormaetxe, Inaki, Williams, Craig R., Chenoweth, Stephen F., Ritchie, Scott A., Ryan, Peter A., Kay, Brian H., Blows, Mark W., and O'Neill, Scott L. (2007) Predicting the age of mosquitoes using transcriptional profiles. Nature Protocols, 2 (11). pp. 2796-2806.

Cook, Peter E., Hugo, Leon E., Iturbe-Ormaetxe, Iñaki, Williams, Craig R., Chenoweth, Stephen F., Ritchie, Scott A., Ryan, Peter A., Kay, Brian H., Blows, Mark W., and O'Neill, Scott L. (2006) The use of transcriptional profiles to predict adult mosquito age under field conditions. Proceedings of the National Academy of Sciences of the United States of America, 103 (48). pp. 18060-18065.

O'Grady, A.P., Cook, P.G., Howe, P., and Werren, G. (2006) Groundwater use by dominant tree species in tropical remnant vegetation communities. Australian Journal of Botany, 54 (2). pp. 155-171.

Lopata, Andreas L., Luijx, Thomas, Fenemore, Bartha, Sweijd, Neville A., and Cook, Peter A. (2002) Development of a monoclonal antibody detection assay for species-specific identification of abalone. Marine Biotechnology, 4 (5). pp. 454-462.

Sweijd, Neville A., Bowie, Rauri C.K., Lopata, Andreas L., Marinaki, Anthony M., Harley, Eric H., and Cook, Peter A. (1998) A PCR technique for forensic species level identification of abalone tissue. Journal of Shellfish Research, 17 (3). pp. 889-895.