A

Adjeroud, M., Fernandez, J.M., Carroll, A.G., Harrison, P.L., and Penin, L. (2010) Spatial patterns and recruitment processes of coral assemblages among contrasting environmental conditions in the southwestern lagoon of New Caledonia. Marine Pollution Bulletin, 61 (7-12). pp. 375-386.

B

Ban, S.S., Graham, N.A.J., and Connolly, S.R. (2013) Relationships between temperature, bleaching and white syndrome on the Great Barrier Reef. Coral Reefs, 32 (1). pp. 1-12.

Buston, Peter M., Jones, Geoffrey P., Planes, Serge, and Thorrold, Simon R. (2012) Probability of successful larval dispersal declines fivefold over 1 km in a coral reef fish. Proceedings of the Royal Society of London B: Biological Sciences, 279 (1735). pp. 1883-1888.

Ban, Natalie C., Cinner, Joshua E., Adams, Vanessa M., Mills, Morena, Almany, Glenn R., Ban, Stephen S., McCook, Laurence J., and White, Alan (2012) Recasting shortfalls of marine protected areas as opportunities through adaptive management. Aquatic Conservation: marine and freshwater ecosystems , 22 (2). pp. 262-271.

Brodie, J.E., Devlin, M., Haynes, D., and Waterhouse, J. (2011) Assessment of the eutrophication status of the Great Barrier Reef lagoon (Australia). Biogeochemistry, 106 (2). pp. 281-302.

Beer, Nicola A., Wing, Stephen R., and Hu, Yi (2011) Physical versus biological control of element incorporation into biogenic carbonate: an in situ experiment in a New Zealand fjord. Marine Ecology Progress Series, 433. pp. 289-301.

Ben-Hamadou, R., Atanasova, N., and Wolanski, E. (2011) Ecohydrology modeling: tools for management. In: Wolanski, Eric, McLusky, Donald, Chícharo, L., and Zalewski, M., (eds.) Ecohydrology and Restoration. Treatise on Estuarine and Coastal Science, 10 . Academic Press, London, UK, pp. 301-328.

Browne, N.K., Smithers, S.G., and Perry, C.T. (2010) Geomorphology and community structure of Middle Reef, central Great Barrier Reef, Australia: an inner-shelf turbid zone reef subject to episodic mortality events. Coral Reefs, 29 (3). pp. 683-689.

Bainbridge, Zoe T., Brodie, Jon E. , Faithful, John W., Sydes, Damon A., and Lewis, Stephen E. (2009) Identifying the land-based sources of suspended sediments, nutrients and pesticides discharged to the Great Barrier Reef from the Tully–Murray Basin, Queensland, Australia. Marine and Freshwater Research, 60 (11). pp. 1081-1090.

Berkeley, A., Perry, C.T., Smithers, S.G., Horton, B.P., and Cundy, , A.B. (2009) Foraminiferal biofacies across mangrove-mudflat environments at Cocoa Creek, north Queensland, Australia. Marine Geology, 263 (1). pp. 64-86.

Brodie, Jon, Lewis, Stephen, Bainbridge, Zoe, Mitchell, Alan, Waterhouse, Jane, and Kroon, Frederieke (2009) Target setting for pollutant discharge management of rivers in the Great Barrier Reef catchment area. Marine and Freshwater Research, 60 (11). pp. 1141-1149.

Berkeley, A. , Perry, C.T. , Smithers, S.G., and Horton, B.P. (2008) The spatial and vertical distribution of living (stained) benthic foraminifera from a tropical, intertidal environment, north Queensland, Australia. Marine Micropaleontology , 69 (2). pp. 240-261.

C

Collier, Catherine J., Lavery, Paul S., Ralph, Peter J., and Masini, Raymond J. (2009) Shade-induced response and recovery of the seagrass Posidonia sinuosa. Journal of Experimental Marine Biology and Ecology, 370 (1-2). pp. 89-103.

Collier, Catherine, and Waycott, Michelle (2009) Drivers of Change to Seagrass Distributions and Communities on the Great Barrier Reef: literature review and gaps analysis. Report. Reef and Rainforest Research Centre, Cairns, QLD, Australia.

Collier, Catherine J., Lavery, Paul S., Ralph, Peter J., and Masini, Raymond J. (2008) Physiological characteristics of the seagrass Posidonia sinuosa along a depth-related gradient of light availability. Marine Ecology Progress Series, 353. pp. 65-79.

Collier, Catherine J., Lavery, Paul S., Masini, Raymond J., and Ralph, Peter J. (2007) Morphological, growth and meadow characteristics of the seagrass Posidonia sinuosa along a depth-related gradient of light availability. Marine Ecology Progress Series, 337. pp. 103-115.

D

Devlin, Michelle (2011) Flooding in NE Australia: how ongoing monitoring of flood plumes helps in managing the Great Barrier Reef. Marine Ecosystems and Management, 4 (4). p. 7.

Dawson, John L., and Smithers, Scott G. (2010) Shoreline and beach volume change between 1967 and 2007 at Raine Island, Great Barrier Reef, Australia. Global and Planetary Change, 72 (3). pp. 141-154.

Doupe, R.G., and Knott, M.J. (2010) Rapid digestion of fish prey by the highly invasive ‘detritivore’ Oreochromis mossambicus. Journal of Fish Biology, 76 (4). pp. 1019-1024.

Doupe, Robert G., Knott, Matthew J., Schaffer, Jason, Burrows, Damien W., and Lymbery, Alan J. (2010) Experimental herbivory of native Australian macrophytes by the introduced Mozambique tilapia Oreochromis mossambicus. Austral Ecology, 35 (1). pp. 24-30.

Devlin, Michelle, Barry, Jon, Painting, Suzanne, and Best, Mike (2009) Extending the phytoplankton tool kit for the UK Water Framework Directive: indicators of phytoplankton community structure. Hydrobiologia, 633 (1). pp. 151-168.

De Freitas, Debora M., and Tagliani, Paulo Roberto A. (2009) The use of GIS for the integration of traditional and scientific knowledge in supporting artisanal fisheries management in southern Brazil. Journal of Environmental Management, 90 (6). pp. 2071-2080.

Devlin, M.J., Barry, J., Mills, D.K., Gowen, R.J., Foden, J., Sivyer, D., Greenwood, N., Pearce, D., and Tett, P. (2009) Estimating the diffuse attenuation coefficient from optically active constituents in UK marine waters. Estuarine, Coastal and Shelf Science , 82 (1). pp. 73-83.

Devlin, Michelle, and Schaffelke, Britta (2009) Spatial extent of riverine flood plumes and exposure of marine ecosystems in the Tully coastal region, Great Barrier Reef. Marine and Freshwater Research, 60 (11). pp. 1109-1122.

Da Silva, Eduardo Teixeira, Ridd, Michael, Klumpp, David, and Ridd, Peter (2004) Relative contribution of food and water to the Cd burden in Balanus amphitrite in an urban tidal creek discharging into the Great Barrier Reef lagoon. Estuarine, Coastal and Shelf Science , 60 (2). pp. 313-324.

E

Emslie, M.J., Pratchett, M.S., Cheal, A.J., and Osborne, K. (2010) Great Barrier Reef butterflyfish community structure: the role of shelf position and benthic community type. Coral Reefs, 29 (3). pp. 705-715.

F

Foden, Jo, Devlin, Michelle J., Mills, David K., and Malcolm, Stephen J. (2011) Searching for undesirable disturbance: an application of the OSPAR eutrophication assessment method to marine waters of England and Wales. Biogeochemistry, 106 (2). pp. 157-175.

Fuentes, M.M.P.B., Dawson, J.L., Smithers, Scott, Hamann, M., and Limpus, C.J. (2010) Sedimentological characteristics of key sea turtle rookeries: potential implications under projected climate change. Marine and Freshwater Research, 61 (4). pp. 464-473.

Fuentes, M.M.P.B., and Hamann, M. (2009) A rebuttal to the claim natural beaches confer fitness benefits to nesting marine turtles. Biology Letters, 5 (2). pp. 266-267.

G

Grech, A., Coles, R., and Marsh, H. (2011) A broad-scale assessment of the risk to coastal seagrasses from cumulative threats. Marine Policy, 35 (5). pp. 560-567.

Gusmão, Luiz Felipe Mendes, and Mckinnon, A. David (2011) Nucleic acid indices of egg production in the tropical copepod Acartia sinjiensis. Journal of Experimental Marine Biology and Ecology, 396 (2). pp. 122-137.

Grech, Alana, Coles, Rob, Waycott, Michelle, Rasheed, Michael, and McKenzie, Len (2010) Risk Assessment for Coastal Seagrass Habitats of the Great Barrier Reef World Heritage Area: Outputs from the Risk Assessment Working Group. Report. Reef and Rainforest Research Centre, Cairns, QLD, Australia.

Gereta, Emmanuel , Mwangomo, Ephraim, and Wolanski, Eric (2009) Ecohydrology as a tool for the survival of the threatened Serengeti ecosystem. Ecohydrology and Hydrobiology, 9 (1). pp. 115-124.

H

Harrison, Hugo B., Williamson, David H., Evans, Richard D., Almany, Glenn R., Thorrold, Simon R., Russ, Garry R., Feldheim, Kevin A., van Herwerden, Lynne, Planes, Serge, Srinivasan, Maya, Berumen, Michael L., and Jones, Geoffrey P. (2012) Larval export from marine reserves and the recruitment benefit for fish and fisheries. Current Biology, 22 (11). pp. 1023-1028.

Heupel, Michelle R., and Simpfendorfer, Colin A. (2008) Movement and distribution of young bull sharks Carcharhinus leucas in a variable estuarine environment. Aquatic Biology, 1. pp. 277-289.

Hazel, Julia, Lawler, Ivan R ., Marsh, Helene, and Robson, Simon (2007) Vessel speed increases collision risk for the green turtle Chelonia mydas. Endangered Species Research, 3 (2). pp. 105-113.

Heupel, Michelle R., Simpfendorfer, Colin A., and Hueter, Robert E. (2004) Estimation of shark home ranges using passive monitoring techniques. Environmental Biology of Fishes, 71 (2). pp. 135-142.

J

Johnston, Ross, and Sheaves, Marcus (2008) Cross-channel distribution of small fish in tropical and subtropical coastal wetlands is trophic-, taxonomic-, and wetland depth-dependent. Marine Ecology Progress Series, 357. pp. 255-270.

K

Kench, P.S., Smithers, S.G., and McLean, R.F. (2012) Rapid reef island formation and stability over an emerging reef flat: Bewick Cay, northern Great Barrier Reef, Australia. Geology, 40 (4). pp. 347-350.

Kayal, Mohsen, Lenihan, Hunter S, Pau, Cedric, Penin, Lucie, and Adjeroud, Mehdi (2011) Associational refuges among corals mediate impacts of a crown-of-thorns starfish Acanthaster planci outbreak. Indirect positive interactions in communities. Coral Reefs, 30 (3). pp. 827-837.

Klein, Carissa J., Ban, Natalie C., Halpern, Benjamin S., Beger, Maria, Game, Edward T., Grantham, Hedley S., Green, Alison, Klein, Travis J., Kininmonth, Stuart, Treml, Eric, Wilson, Kerrie, and Possingham, Hugh P. (2010) Prioritizing land and sea conservation investments to protect coral reefs. PLoS ONE, 5 (8). e12431. pp. 1-8.

Kinney, Michael John, and Simpfendorfer, Colin Ashley (2009) Reassessing the value of nursery areas to shark conservation and management. Conservation Letters, 2 (2). pp. 53-60.

Kroon, F.J., and Brodie, J. (2009) Catchment management and health of coastal ecosystems: synthesis and future research. Marine and Freshwater Research, 60 (11). pp. 1196-1200.

L

Lymbery, A.J., Hassan, M., Morgan, D.L., Beatty, S.J., and Doupé, R.G. (2010) Parasites of native and exotic freshwater fishes in south-western Australia. Journal of Fish Biology, 76 (7). pp. 1770-1785.

Lewis, Stephen, Milla, Rob, Brodie, Jon, Bainbridge, Zoë, and Davis, Aaron (2009) Pesticide residues in the Great Barrier Reef. Pesticides News, 86. pp. 8-11.

M

Martins De Freitas, Debora (2010) The role of public participation, spatial information and GIS in natural resource management of the dry tropical coast, northern Australia. PhD thesis, James Cook University.

Magnusson, Marie (2009) Effects of priority herbicides and their breakdown products on tropical, estuarine microalgae of the Great Barrier Reef Lagoon. PhD thesis, James Cook University.

Mazda, Yoshihiro, and Wolanski, Eric (2009) Hydrodynamics and modelling of water flow in mangrove areas. In: Perillo, Gerardo M.E., Wolanski, Eric, Cahoon, Donald R., and Brinson, Mark M., (eds.) Coastal Wetlands: an Integrated ecosystem ppproach. Elsevier, Amsterdam, The Netherlands, pp. 231-261.

Maughan, M., and Brodie, J. (2009) Reef exposure to river-borne contaminants: a spatial model. Marine and Freshwater Research, 60 (11). pp. 1132-1140.

Mitchell, A., Reghenzani, J., Faithful, J., Furnas, M., and Brodie, J. (2009) Relationships between land use and nutrient concentrations in streams draining a ‘wet-tropics’ catchment in northern Australia. Marine and Freshwater Research, 60 (11). pp. 1097-1108.

Mackey, Paul, Collier, Catherine J., and Lavery, Paul S. (2007) Effects of experimental reduction of light availability on the seagrass Amphibolis griffithi. Marine Ecology Progress Series, 342. pp. 117-126.

N

Nott, Jonathan, Smithers, Scott, Walsh, Kevin, and Rhodes, Ed (2009) Sand beach ridges record 6000 year history of extreme tropical cyclone activity in northeastern Australia. Quaternary Science Reviews, 28 (15). pp. 1511-1520.

P

Poulakis, Gregg R., Stevens, Philip W., Timmers, Amy A., Stafford, Christopher J., and Simpfendorfer, Colin A. (2013) Movements of juvenile endangered smalltooth sawfish, Pristis pectinata, in an estuarine river system: use of non-main-stem river habitats and lagged responses to freshwater inflow-related changes. Environmental Biology of Fishes, 96 (6). pp. 763-778.

Perry, C.T., Edinger, E.N., Kench, P.S., Murphy, G.N., Smithers, S.G., Steneck, R.S., and Mumby, P.J. (2012) Estimating rates of biologically driven coral reef framework production and erosion: a new census-based carbonate budget methodology and applications to the reefs of Bonaire. Coral Reefs, 31 (3). pp. 853-868.

Perry, Chris T., and Smithers, Scott G. (2011) Cycles of coral reef 'turn-on', rapid growth and 'turn-off' over the past 8500 years: a context for understanding modern ecological states and trajectories. Global Change Biology, 17 (1). pp. 76-86.

Palmer, S. E., Perry, Chris, Smithers, S.G., and Gulliver, P. (2010) Internal structure and accretionary history of a nearshore, turbid-zone coral reef: Paluma Shoals, central Great Barrier Reef, Australia. Marine Geology, 276 (1-4). pp. 14-29.

Perry, C.T., and Smithers, S.G. (2010) Evidence for the episodic “turn on” and “turn off” of turbid-zone coral reefs during the late Holocene sea-level highstand. Geology, 38 (2). pp. 119-122.

Paton, D.C., Rogers, D.J., Hill, B.M., Bailey, C.P., and Ziembicki, M. (2009) Temporal changes to spatially stratified waterbird communities of the Coorong, South Australia: implications for the management of heterogenous wetlands. Animal Conservation, 12 (5). pp. 408-417.

Platten, J. R., Tibbetts, I. R., and Sheaves, M. J. (2002) The influence of increased line-fishing mortality on the sex ratio and age of sex reversal of the venus tusk fish. Journal of Fish Biology, 60 (2). pp. 301-318.

R

Roche, Ronan C., Perry, Chris T., Johnson, Kenneth G., Sultana, Kerry, Smithers, Scott G., and Thompson, Angus A. (2011) Mid-Holocene coral community data as baselines for understanding contemporary reef ecological states. Palaeogeography, Palaeoclimatology, Palaeoecology, 299 (1-2). pp. 159-167.

S

Simpfendorfer, Colin A., Yeiser, Beau G., Wiley, Tonya R., Poulakis, Gregg R., Stevens, Philip W., and Heupel, Michelle R. (2011) Environmental influences on the spatial ecology of juvenile smalltooth sawfish (Pristis pectinata): results from acoustic monitoring. PLoS One, 6 (2). e16918. pp. 1-12.

Stoeckl, Natalie, Hicks, Christina C., Mills, Morena, Fabricius, Katharina, Esparon, Michelle, Kroon, Frederieke, Kaur, Kamaljit, and Costanza, Robert (2011) The economic value of ecosystem services in the Great Barrier Reef: our state of knowledge. Annals of the New York Academy of Sciences, 1219. pp. 113-133.

Smithers, Scott G. (2009) Great Barrier Reef Islands, Geology. In: Gillespie, Rosemary G., and Clague, David A., (eds.) Encyclopedia of Islands. University of California Press, Berkeley, USA, pp. 386-388.

Sheaves, Marcus, Duc, Nguyen Huu , and Khoa, Nguyen Xuan (2008) Ecological attributes of a tropical river basin vulnerable to the impacts of clustered hydropower developments. Marine and Freshwater Research, 59 (11). pp. 971-986.

Sheaves, Marcus, and Johnston, Ross (2008) Influence of marine and freshwater connectivity on the dynamics of subtropical estuarine wetland fish metapopulations. Marine Ecology Progress Series, 357. pp. 225-243.

Sheaves, Marcus, Connolly, Rod, and Johnston, Ross (2007) Assessment of Techniques for Determining the Health of Tropical Estuarine Ecosystems. Report. Marine and Tropical Sciences Research Facility, Cairns. (Unpublished)

Sheaves, Marcus, Collins, John, Houston, Wayne, Dale, Pat, Revill, Andrew, Johnston, Ross, and Abrantes, Katya (2006) Contribution of floodplain wetland pools to the ecological functioning of the Fitzroy River Estuary. Report. Cooperative Research Centre for Coastal Zone, Estuary and Waterway Management, Brisbane, QLD, Australia.

Simpfendorfer, Colin A., Freitas, Garin G., Wiley, Tonya R., and Heupel, Michelle R. (2005) Distribution and habitat partitioning of immature bull sharks (Carcharhinus leucas) in a southwest Florida estuary. Estuaries, 28 (1). pp. 76-83.

Smithers, S., and Larcombe, P. (2003) Late Holocene initiation and growth of a nearshore turbid-zone coral reef: Paluma Shoals, central Great Barrier Reef, Australia. Coral Reefs, 22. pp. 499-505.

T

Trapon, Mélanie L., Pratchett, Morgan S., and Penin, Lucie (2011) Comparative effects of different disturbances in coral reef habitats in Moorea, French Polynesia. Journal of Marine Biology, 2011. 807625. pp. 1-11.

U

Ubeda, Armando J., Simpfendorfer, C.A., and Heupel, M.R. (2009) Movement of bonnetheads, Sphyrna tiburo, as a response to salinity change in a Florida estuary. Environmental Biology of Fishes, 84 (3). pp. 292-303.

W

Wilkinson, Adam D., Collier, Catherine J., Flores, Florita, Mercurio, Phil, O'Brien, Jake, Ralph, Peter J., and Negri, Andrew P. (2015) A miniature bioassay for testing the acute phytotoxicity of Photosystem II herbicides on seagrass. PLoS ONE, 10 (2). e0117541. pp. 1-17.

Wolanski, Eric, McLusky, Donald, Laane, R.W.P.M., and Middleburg, J.J. (2011) Biogeochemistry. Treatise on Estuarine and Coastal Science, 5 . Academic Press, London, UK.

Wolanski, Eric, McLusky, Donald, Simenstad, C., and Yanagi, T. (2011) Classification of Estuarine and Nearshore Coastal Ecosystems. Treatise on Estuarine and Coastal Science, 1 . Academic Press, London, UK.

Wolanski, Eric, McLusky, Donald, Chícharo, L., and Zalewski, M. (2011) Ecohydrology and Restoration. Treatise on Estuarine and Coastal Science, 10 . Academic Press, London, UK.

Wolanski, Eric, McLusky, Donald, van den Belt, M., and Costanza, R. (2011) Ecological Economics of Estuaries and Coasts. Treatise on Estuarine and Coastal Science, 12 . Academic Press, London, UK.

Wolanski, Eric, McLusky, Donald, Baird, D., and Mehta, A. (2011) Estuarine and Coastal Ecosystem Modeling. Treatise on Estuarine and Coastal Science, 9 . Academic Press, London, UK.

Wolanski, Eric, McLusky, Donald, Flemming, B.W., and Hansom, J.D. (2011) Estuarine and Coastal Geology and Geomorphology. Treatise on Estuarine and Coastal Science, 3 . Academic Press, London, UK.

Wolanski, Eric, McLusky, Donald, Heip, C.H.R., Middleburg, J.J., and Philippart, C.J.M. (2011) Functioning of Ecosystems at the Land–Ocean Interface. Treatise on Estuarine and Coastal Science, 7 . Academic Press, London, UK.

Wolanski, Eric, McLusky, Donald, and Schimmield, G. (2011) Geochemistry of Estuaries and Coasts. Treatise on Estuarine and Coastal Science, 4 . Academic Press, London, UK.

Wolanski, Eric, McLusky, Donald, Kennish, M.J., and Elliott, M. (2011) Human-Induced Problems (Uses and Abuses). Treatise on Estuarine and Coastal Science, 8 . Academic Press, London, UK.

Wolanski, Eric, McLusky, Donald, Kremer, H.H., and Pinckney, J.L. (2011) Management of Estuaries and Coasts. Treatise on Estuarine and Coastal Science, 11 . Academic Press, London, UK.

Wolanski, Eric, McLusky, Donald, Wilson, J.G., and Luczkovich, J.J. (2011) Trophic Relationships of Coastal and Estuarine Ecosystems. Treatise on Estuarine and Coastal Science, 6 . Academic Press, London, UK.

Wolanski, Eric, McLusky, Donald, Uncles, R.J., and Monismith, S.G. (2011) Water and Fine-Sediment Circulation. Treatise on Estuarine and Coastal Science, 2 . Academic Press, London, UK.

Werry, J.M., Lee, S.Y., Otway, N.M., Hu, Y., and Sumpton, W. (2011) A multi-faceted approach for quantifying the estuarine–nearshore transition in the life cycle of the bull shark, Carcharhinus leucas. Marine and Freshwater Research, 62 (12). pp. 1421-1431.

Wen, C.K-C. , Pratchett, M.S., Shao, K-T., Kan, K-P., and Chan, B.K.K. (2010) Effects of habitat modification on coastal fish assemblages. Journal of Fish Biology, 77 (7). pp. 1674-1687.

Wolanski, Eric, Spagnol, Simon, and Lim, Eng B. (2002) Fine sediment dynamics in the mangrove-fringed, muddy coastal zone. In: Healy, Terry, Wang, Ying, and Healy, Judy-Ann, (eds.) Muddy Coasts of the World: processes, deposits and function. Proceedings in Marine Science, 4 . Elsevier, Amsterdam, The Netherlands, pp. 279-292.

Y

Yeo, Bee Hong, Squires, Dale, Ibrahim, Kamarruddin, Gjertsen, Heidi, Kamil, Syarifah Khadiejah S.M., Zulkifli, Rahayu, Groves, Theodore, Dutton, Peter H., Hong, Meen Chee, and Tan, Chun Hong (2011) Can coastal fisheries bear the cost of sea turtle conservation: evidence from the east coast of peninsular Malaysia. In: Dutton, Peter H., Squires, Dale, and Ahmed, Mahfuzuddin, (eds.) Conservation of Pacific Sea Turtles. University of Hawai'i Press, Honolulu, HI, USA, pp. 319-349.

Z

Ziegler, S., Stieglitz, T., and Kininmonth, S. (2009) Mapping reef features from multibeam sonar data using multiscale morphometric analysis. Marine Geology, 264 (3). pp. 209-217.

Ziegler, Stefan, Stieglitz, Thomas, and Kininmonth, Stuart (2009) Biotic classification of a coral reef using pattern recognition from multibeam bathymetric sonar data. In: Proceedings of AMSA2009 International Conference. - . From: AMSA2009 International Conference, 5 - 9 July 2009, Adelaide, SA, Australia.