B

Beer, Andrew C., and Southgate, Paul C. (2008) Effect of mesh coverings on retention and growth of blacklip pearl oyster (Pinctada margaritifera) spat during early nursery culture. Aquatic Living Resources, 21 (4). pp. 441-445.

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C

Carl, Christina (2012) Surface-based technologies and the settlement of Mytilus galloprovincialis. PhD thesis, James Cook University.

Carl, C., Poole, A.J., Vucko, M.J., Williams, M.R., Whalan, S., and de Nys, R. (2011) Optimising settlement assays of pediveligers and plantigrades of Mytilus galloprovincialis. Biofouling, 27 (8). pp. 859-868.

Chick, Rowan C. (2010) Batch-tagging blacklip abalone (Haliotis rubra) for identification of hatchery-reared individuals on natural coastal reefs in New South Wales, Australia. Journal of Shellfish Research, 29 (1). pp. 209-215.

Carton, A.G., Jeffs, A.G., Foote, G., Palmer, H., and Bilton, J. (2007) Evaluation of methods for assessing the retention of seed mussels (Perna canaliculus) prior to seeding for grow-out. Aquaculture, 262 (2-4). pp. 521-527.

D

Doubleday, Zoë A., Clarke, Steven M., Li, Xiaoxu, Pecl, Gretta T., Ward, Tim M., Battaglene, Stephen, Frusher, Stewart, Gibbs, Philip J., Hobday, Alistair J., Hutchinson, Neil, Jennings, Sarah M., and Stoklosa, Richard (2013) Assessing the risk of climate change to aquaculture: a case study from south-east Australia. Aquaculture Environment Interactions , 3 (2). pp. 163-175.

Domingos, J.A., Fromm, P., Smith-Keune, C., and Jerry, D.R. (2012) A robust flow-cytometric protocol for assessing growth rate of hatchery-reared barramundi Lates calcarifer larvae. Journal of Fish Biology, 80 (6). pp. 2253-2266.

Distel, Daniel L., Amin, Mehwish, Burgoyne, Adam, Linton, Eric, Mamangkey, Gustaf, Morrill, Wendy, Nove, John, Wood, Nicole, and Yang, Joyce (2011) Molecular phylogeny of Pholadoidea Lamarck, 1809 supports a single origin for xylotrophy (wood feeding) and xylotrophic bacterial endosymbiosis in Bivalvia. Molecular Phylogenetics and Evolution, 61 (2). pp. 245-254.

G

Gan, Han Ming, Tan, Mun Hua, Austin, Christopher M., Sherman, Craig D.H., Wong, Yen Ting, Strugnell, Jan, Gervis, Mark, McPherson, Luke, and Miller, Adam D. (2019) Best foot forward: nanopore long reads, hybrid meta-assembly, and haplotig purging optimizes the first genome assembly for the southern hemisphere blacklip abalone (Haliotis rubra). Frontiers in Genetics, 10. 889.

J

Jerry, Dean R., Kvingedal, Renate, Lind, Curtis E., Evans, Brad S., Taylor, Joseph J.U., and Safari, Alex E. (2012) Donor-oyster derived heritability estimates and the effect of genotype × environment interaction on the production of pearl quality traits in the silver-lip pearl oyster, Pinctada maxima. Aquaculture, 338-341. pp. 66-71.

K

Kvingedal, Renate (2011) Environment, genes and the effects of genotype by environment (G x E) interactions, on the expression of commercially important traits in the silver-lipped pearl oyster, Pinctada maxima (Jameson). PhD thesis, James Cook University.

L

Lapico, Adrian, Sankupellay, Mangalam, Cianciullo, Louis, Myers, Trina, Konovalov, Dmitry A., Jerry, Dean R., Toole, Preston, Jones, David B., and Zenger, Kyall R. (2019) Using image processing to automatically measure pearl oyster size for selective breeding. In: Proceedings of the International Conference on Digital Image Computing. pp. 90-97. From: DICTA 2019: International Conference on Digital Image Computing: Techniques and Applications, 2-4 December 2019, Perth, WA, Australia.

Lu, Xia, Wang, Hongxia, Li, Yan, and Liu, Baozhong (2016) The impact of selection on population genetic structure in the clam Meretrix petechialis revealed by microsatellite markers. Genetica, 144 (1). pp. 1-8.

Liu, W., Heasman, M., Simpson, R., Dworjanyn, S., and Pirozzi, I. (2006) Growth and feeding in juvenile triploid and diploid blacklip abalone, Haliotis rubra (Leach, 1814), at two temperatures. Aquaculture Nutrition, 12 (6). pp. 410-417.

M

Militz, Thane A., Kinch, Jeff, and Southgate, Paul C. (2015) Population demographics of Tridacna noae (Röding, 1798) in New Ireland, Papua New Guinea. Journal of Shellfish Research, 34 (2). pp. 329-335.

McGinty, E.L., Zenger, K.R., Jones, D.B., and Jerry, D.R. (2012) Transcriptome analysis of biomineralisation-related genes within the pearl sac: host and donor oyster contribution. Marine Genomics, 5. pp. 27-33.

Mamangkey, Noldy Gustaf F., Agatonovic, Snezana, and Southgate, Paul C. (2010) Assessing pearl quality using reflectance UV-Vis spectroscopy: does the same donor produce consistent pearl quality? Marine Drugs, 8 (9). pp. 2517-2525.

Mingoa, Sylvia Suzanne M. (1990) The influence of environmental factors on juvenile Tridacna gigas. PhD thesis, James Cook University of North Queensland.

P

Paisley, Larry G., Ariel, Ellen, Lyngstad, Trude, Jónsson, Gísli, Vennerström, Pia, Hellström, Anders, and Østergaard, Peter (2010) An overview of aquaculture in the Nordic countries. Journal of the World Aquaculture Society, 41 (1). pp. 1-17.

R

Roura, Álvaro, Doyle, Stephen R., Nande, Manuel, and Strugnell, Jan M. (2017) You are what you eat: a genomic analysis of the gut microbiome of captive and wild Octopus vulgaris paralarvae and their zooplankton prey. Frontiers in Physiology, 8. 362.

Robinson, Nick, Smith, Ben, Cooke, Ira, and Strugnell, Jan (2013) A snail's pace: a preliminary analysis of the effects of stress and genetics on movement of Haliotis. Aquaculture, 376-379. pp. 25-35.

S

Shiel, Brett P., Cooke, Ira R., Hall, Nathan E., Robinson, Nicholas A., and Strugnell, Jan M. (2020) Gene expression differences between abalone that are susceptible and resilient to a simulated heat wave event. Aquaculture, 526. 735317.

Shiel, Brett P., Cooke, Ira R., Hall, Nathan E., Robinson, Nicholas A., and Strugnell, Jan M. (2018) Summer mortality in molluscs: the genetic basis for resilience and susceptibility. In: Breeding Focus 2018. pp. 59-79. From: Breeding Focus 2018: reducing heat stress, 19-20 September 2018, Armidale, NSW, Australia.

Shiel, Brett P., Hall, Nathan E., Cooke, Ira R., Robinson, Nicholas A., Stone, David A.J., and Strugnell, Jan M. (2017) The effect of commercial, natural and grape seed extract supplemented diets on gene expression signatures and survival of greenlip abalone (Haliotis laevigata) during heat stress. Aquaculture, 479. pp. 798-807.

Shiel, Brett P., Hall, Nathan E., Cooke, Ira R., Robinson, Nicholas A., and Strugnell, Jan M. (2017) Epipodial tentacle gene expression and predetermined resilience to summer mortality in the commercially important greenlip abalone, Haliotis laevigata. Marine Biotechnology, 19 (2). pp. 191-205.

Shiel, Brett P., Hall, Nathan E., Cooke, Ira R., Robinson, Nicholas A, and Strugnell, Jan M. (2015) De novo characterisation of the greenlip abalone transcriptome (Haliotis laevigata) with a focus on the heat shock protein 70 (HSP70) family. Marine Biotechnology, 17. pp. 23-32.

Southgate, Paul C., Strack, Elisabeth, Hart, Anthony, Wada, Katsuhiko T., Monteforte, Mario, Cariño , Micheline, Langy, Sandra, Lo, Cedrik, Acosta-Salmon, Hector, and Wang, Aimin (2008) Exploitation and culture of major commercial species. In: Southgate, Paul C., and Lucas, John S., (eds.) The Pearl Oyster. Elsevier, Oxford, UK, pp. 303-355.

Southgate, Paul C., Lucas, John S., and Torrey, Richard D. (2008) Future developments. In: Southgate, Paul C., and Lucas, John S., (eds.) The Pearl Oyster. Elsevier, Oxford, UK, pp. 555-565.

W

Watson, Sue-Ann, Southgate, Paul C., Miller, Gabrielle M., Moorhead, Jonathan A., and Knauer, Jens (2012) Ocean acidification and warming reduce juvenile survival of the fluted giant clam, Tridacna squamosa. Molluscan Research, 32 (3). pp. 177-180.

Welladsen, Heather M., Southgate, Paul C., and Heimann, Kirsten (2010) The effects of exposure to near-future levels of ocean acidification on shell characteristics of Pinctada fucata (Bivalvia: Pteriidae). Molluscan Research, 30 (3). pp. 125-130.

Wassnig, Matthew, Roberts, Rodney D., Krsinich, Anton, and Way, Robert W. (2010) Effects of water flow rate on growth rate, mortality and biomass return of abalone in slab tanks. Aquaculture Research, 41 (6). pp. 839-846.

Watson, Sue-Ann, Southgate, Paul C., Tyler, Paul A., and Peck, Lloyd (2009) Early larval development of the Sydney rock oyster Saccostrea glomerata under near-future predictions of CO2 driven ocean acidification. Journal of Shellfish Research, 28 (3). pp. 431-437.