A

Ani, Chinenye J., Baird, Mark, and Robson, Barbara (2024) Modelling buoyancy-driven vertical movement of Trichodesmium application in the Great Barrier Reef. Ecological Modelling, 487. 110567.

Appert, Collette, Udyawer, Vinay, Simpfendorfer, Colin A., Heupel, Michelle R., Scott, Molly, Currey-Randall, Leanne M., Harborne, Alastair R., Jaine, Fabrice, and Chin, Andrew (2023) Use, misuse, and ambiguity of indices of residence in acoustic telemetry studies. Marine Ecology Progress Series, 714. pp. 27-44.

B

Buddle, Alice L., Van Dyke, James U., Thompson, Michael B., Simpfendorfer, Colin A., Murphy, Christopher R., Day, Margot L., and Whittington, Camilla M. (2022) Structure and permeability of the egg capsule of the placental Australian sharpnose shark, Rhizoprionodon taylori. Journal of Comparative Physiology B: Biochemical Systemic and Environmental Physiology, 192. pp. 263-273.

Bartes, Saia, Simpfendorfer, Colin, Walker, Terence I., King, Carissa, Loneragan, Neil, and Braccini, Matías (2021) Conventional tagging of sharks in Western Australia: the main commercial species exhibit contrasting movement patterns. Marine and Freshwater Research, 72 (11).

Berry, K.L.E., Hess, S., Clark, T.D., Wenger, A.S., Hoogenboom, M.O., and Negri, A.P. (2021) Effects of suspended coal particles on gill structure and oxygen consumption rates in a coral reef fish. Marine Pollution Bulletin, 169. 112459.

Bouyoucos, Ian, Trujillo, Jose E., Weideli, Ornella C., Nakamura, Nao, Mourier, Johann, Planes, Serge, Simpfendorfer, Colin A., and Rummer, Jodie L. (2021) Investigating links between thermal tolerance and oxygen supply capacity in shark neonates from a hyperoxic tropical environment. Science of the Total Environment, 782. 146854.

C

Clark, Bethany L., Carneiro, Ana P.B., Pearmain, Elizabeth J., Rouyer, Marie-Morgane, Clay, Thomas A., Cowger, Win, Phillips, Richard A., Manica, Andrea, Hazin, Carolina, Eriksen, Marcus, González-Solís, Jacob, Adams, Josh, Albores-Barajas, Yuri V., Alfaro-Shigueto, Joanna, Alho, Maria Saldanha, Araujo, Deusa Teixeira, Arcos, José Manuel, Arnould, John P.Y., Barbosa, Nadito J.P., Barbraud, Christophe, Beard, Annalea M., Beck, Jessie, Bell, Elizabeth A., Bennet, Della G., Berlincourt, Maud, Biscoito, Manuel, Bjørnstad, Oskar K., Bolton, Mark, Booth Jones, Katherine A., Borg, John J., Bourgeois, Karen, Bretagnolle, Vincent, Bried, Joël, Briskie, James V., Brooke, M. de L., Brownlie, Katherine C., Bugoni, Leandro, Calabrese, Licia, Campioni, Letizia, Carey, Mark J., Carle, Ryan D., Carlile, Nicholas, Carreiro, Ana R., Catry, Paulo, Catry, Teresa, Cecere, Jacopo G., Ceia, Filipe R., Cherel, Yves, Choi, Chang-Yong, Cianchetti-Benedetti, Marco, Clarke, Rohan H., Cleeland, Jaimie B., Colodro, Valentina, Congdon, Bradley C., Danielsen, Jóhannis, De Pascalis, Federico, Deakin, Zoe, Dehnhard, Nina, Dell’Omo, Giacomo, Delord, Karine, Descamps, Sébastien, Dilley, Ben J., Dinis, Herculano A., Dubos, Jerome, Dunphy, Brendon J., Emmerson, Louise M., Fagundes, Ana Isabel, Fayet, Annette L., Felis, Jonathan J., Fischer, Johannes H., Freeman, Amanda N. D., Fromant, Aymeric, Gaibani, Giorgia, García, David, Gjerdrum, Carina, Gomes, Ivandra Soeli Gonçalves Correia, Forero, Manuela G., Granadeiro, José P., Grecian, W. James, Grémillet, David, Guilford, Tim, Hallgrimsson, Gunnar Thor, Halpin, Luke R., Hansen, Erpur Snær, Hedd, April, Helberg, Morten, Helgason, Halfdan H., Henry, Leeann M., Hereward, Hannah F. R., Hernandez-Montero, Marcos, Hindell, Mark A., Hodum, Peter J., Imperio, Simona, Jaeger, Audrey, Jessopp, Mark, Jodice, Patrick G. R., Jones, Carl G., Jones, Christopher W., Jónsson, Jón Einar, Kane, Adam, Kapelj, Sven, Kim, Yuna, Kirk, Holly, Kolbeinsson, Yann, Kraemer, Philipp L., Krüger, Lucas, Lago, Paulo, Landers, Todd J., Lavers, Jennifer L., Le Corre, Matthieu, Leal, Andreia, Louzao, Maite, Madeiros, Jeremy, Magalhães, Maria, Mallory, Mark L., Masello, Juan F., Massa, Bruno, Matsumoto, Sakiko, McDuie, Fiona, McFarlane Tranquilla, Laura, Medrano, Fernando, Metzger, Benjamin J., Militão, Teresa, Montevecchi, William A., Montone, Rosalinda C., Navarro-Herrero, Leia, Neves, Verónica C., Nicholls, David G., Nicoll, Malcolm A. C., Norris, Ken, Oppel, Steffen, Oro, Daniel, Owen, Ellie, Padget, Oliver, Paiva, Vítor H., Pala, David, Pereira, Jorge M., Péron, Clara, Petry, Maria V., de Pina, Admilton, Pina, Ariete T. Moreira, Pinet, Patrick, Pistorius, Pierre A., Pollet, Ingrid L., Porter, Benjamin J., Poupart, Timothée A., Powell, Christopher D. L., Proaño, Carolina B., Pujol-Casado, Júlia, Quillfeldt, Petra, Quinn, John L., Raine, Andre F., Raine, Helen, Ramírez, Iván, Ramos, Jaime A., Ramos, Raül, Ravache, Andreas, Rayner, Matt J., Reid, Timothy A., Robertson, Gregory J., Rocamora, Gerard J., Rollinson, Dominic P., Ronconi, Robert A., Rotger, Andreu, Rubolini, Diego, Ruhomaun, Kevin, Ruiz, Asunción, Russell, James C., Ryan, Peter G., Saldanha, Sarah, Sanz-Aguilar, Ana, Sardà-Serra, Mariona, Satgé, Yvan G., Sato, Katsufumi, Schäfer, Wiebke C., Schoombie, Stefan, Shaffer, Scott A., Shah, Nirmal, Shoji, Akiko, Shutler, Dave, Sigurðsson, Ingvar A., Silva, Mónica C., Small, Alison E., Soldatini, Cecilia, Strøm, Hallvard, Surman, Christopher A., Takahashi, Akinori, Tatayah, Vikash R. V., Taylor, Graeme A., Thomas, Robert J., Thompson, David R., Thompson, Paul M., Thórarinsson, Thorkell L., Vicente-Sastre, Diego, Vidal, Eric, Wakefield, Ewan D., Waugh, Susan M., Weimerskirch, Henri, Wittmer, Heiko U., Yamamoto, Takashi, Yoda, Ken, Zavalaga, Carlos B., Zino, Francis J., and Dias, Maria P. (2023) Global assessment of marine plastic exposure risk for oceanic birds. Nature Communications, 14. 3665.

Chapman, Demian D., Ali, Khadeeja, MacNeil, M. Aaron, Heupel, Michelle R., Meekan, Mark, Harvey, Euan S., Simpfendorfer, Colin A., and Heithaus, Michael R. (2021) Long-term investment in shark sanctuaries. Science, 372 (6541). p. 473.

Carter, A.B., Coles, R.G., McKenna, S.A., and Rasheed, M.A. (2016) A spatial management tool for seagrasses in the Great Barrier Reef World Heritage Area. In: International Coral Reef Symposium: abstract book. 27805. p. 52. From: 13th International Coral Reef Symposium, 19-24 June 2016, Honolulu, HI, USA.

D

Datta, Amber W., and Chaffin, Brian C. (2022) Evolving adaptive governance: challenging assumptions through an examination of fisheries law in Solomon Islands. Ecology and Society, 27 (2). 30.

E

Emmons, Sophia M., D'Alberto, Brooke M., Smart, Jonathan J., and Simpfendorfer, Colin A. (2021) Age and growth of tiger shark (Galeocerdo cuvier) from Western Australia. Marine and Freshwater Research, 72 (7). pp. 950-963.

Espinoza, Mario, Ledee, Elodie J.I., Smoothey, Amy F., Heupel, Michelle, Peddemors, Victor M., Tobin, Andrew J., and Simpfendorfer, Colin A. (2021) Intra-specific variation in movement and habitat connectivity of a mobile predator revealed by acoustic telemetry and network analyses. Marine Biology, 168 (6). 80.

G

Galbraith, Gemma F., Cresswell, Benjamin J., McCormick, Mark, Bridge, Thomas C., and Jones, Geoffrey P. (2022) Contrasting hydrodynamic regimes of submerged pinnacle and emergent coral reefs. PLoS ONE, 17 (8). e0273092.

Glasl, Bettina, Robbins, Steven, Frade, Pedro R., Marangon, Emma, Laffy, Patrick W., Bourne, David G., and Webster, Nicole N. (2020) Comparative genome-centric analysis reveals seasonal variation in the function of coral reef microbiomes. ISME Journal: multidisciplinary journal of microbial ecology, 14. pp. 1435-1450.

Georgeson, L., Rigby, C. L., Emery, T. J., Fuller, M., Hartog, J., Williams, A. J., Hobday, A. J., Duffy, C. A. J., Simpfendorfer, C. A., Okuda, T., Stobutzki, I. C., and Nicol, S. J. (2020) Ecological risks of demersal fishing on deepwater chondrichthyan populations in the Southern Indian and South Pacific Oceans. ICES Journal of Marine Science, 77 (5). pp. 1711-1727.

H

Hutchings, Marissa J., Hamann, Mark, Smithers, Scott G., Daley, Emily, and Birtles, R. Alastair (2023) Color pattern complexity in dwarf minke whales (Balaenoptera acutorostrata) of the northern Great Barrier Reef of Australia. Marine Mammal Science, 39 (3). pp. 780-793.

Hillcoat, Suzanne K., Curnock, Matthew I., Gardiner, Naomi M., and Birtles, R. Alastair (2021) Developing protocols for in‐water morphometric measurements of cetaceans using stereo‐videogrammetry. Marine Mammal Science, 37 (1). pp. 45-63.

J

Jensen, Michael P., Eguchi, Tomoharu, Fitzsimmons, Nancy N., Mccarthy, Michael A., Fuentes, Mariana M.P.B., Hamann, Mark, Limpus, Colin J., Bell, Ian P., and Read, Mark A. (2022) Integrating Climate Change and Management Scenarios in Population Models to Guide the Conservation of Marine Turtles. Bulletin of Marine Science, 98 (2). pp. 131-154.

K

Kembrey, Holly, Pittman, Simon J., Bejarano, Ivonne, Blanco‐Parra, María del Pilar, Jabado, Rima W., Yaghmour, Fadi, and Mateos‐Molina, Daniel (2024) Fish–Seascape Associations Within an Offshore Protected Area in the Arabian Gulf. Marine Ecology, 45 (6). e12847.

Kophamel Orduna, Sara, Ward, Leigh, Konovalov, Dmitry, Ariel, Ellen, Bell, Ian, Cassidy, Nathan, Balastegui Martinez, Maria T., and Munns, Suzanne (2021) Adipose tissue estimation in green turtles (Chelonia mydas) by bioelectrical impedance analysis and diagnostic imaging. In: Abstract Book of the SEB 2021 Annual Conference (2021) A16.3. p. 173. From: Society for Experimental Biology 2021 Annual Conference, 29 June - 8 July 2021, Online.

Kophamel, Sara, Ward, Leigh, Konovalov, Dmitry, Ariel, Ellen, Mendez, Diana, Bell, Ian, Cassidy, Nathan, Balastegui Martinez, Maria T., and Munns, Suzanne (2021) Adipose tissue estimation in green turtles (Chelonia mydas) using deep learning, diagnostic imaging and bioelectrical impedance analysis. In: [Presented at CUENCA 2021]. 3. p. 293. From: CUENCA 2021: 69th Wildlife Disease Association (WDA)/14th European Wildlife Disease Association (EWDA) Joint Virtual Conference, 30 August - 2 September 2021, Online.

Kophamel, Sara, Illing, Bjorn, Ariel, Ellen, Ward, Leigh C., Mendez, Diana, Skerratt, Lee F., Hamann, Mark, Difalco, Morgan, and Munns, Suzanne (2021) Global conservation implications for health assessment studies in non-captive wildlife. In: [Presented at CUENCA 2021]. 51. p. 178. From: CUENCA 2021: 69th Wildlife Disease Association (WDA)/14th European Wildlife Disease Association (EWDA) Joint Virtual Conference, 30 August - 2 September 2021, Online.

M

Mazoudier, Samuel Q., Kingsford, Michael J., Strickland, Jessica K., and Pitt, Kylie A. (2023) Stable isotopes reveal sargassum rafts provide a trophic subsidy to juvenile pelagic fishes. Estuarine, Coastal and Shelf Science, 295. 108548.

Miller, Michaela E. (2022) Ecological fate of microplastics in a tropical marine environment. PhD thesis, James Cook University.

Matley, Jordan K., Klinard, Natalie V., Barbosa Martins, Ana P., Aarestrup, Kim, Aspillaga, Eneko, Cooke, Steven J., Cowley, Paul D., Heupel, Michelle R., Lowe, Christopher G., Lowerre-Barbieri, Susan K., Mitamura, Hiromichi, Moore, Jean Sébastien, Simpfendorfer, Colin A., Stokesbury, Michael J.W., Taylor, Matthew D., Thorstad, Eva B., Vandergoot, Christopher S., and Fisk, Aaron T. (2022) Global trends in aquatic animal tracking with acoustic telemetry. Trends in Ecology & Evolution, 37 (1). pp. 79-94.

Marangoni, Laura F.B., Davies, Thomas, Smyth, Tim, Rodriguez, Airam, Hamann, Mark, Duarte, Cristian, Pendoley, Kellie, Berge, Jørgen, Maggi, Elena, and Levy, Oren (2022) Impacts of artificial light at night in marine ecosystems—A review. Global Change Biology, 28 (18). pp. 5346-5367.

Morrissey, Scott J., Schlaefer, Jodie A., and Kingsford, Michael J. (2020) Experimental validation of the relationships between cubozoan statolith elemental chemistry and salinity and temperature. Journal of Experimental Marine Biology and Ecology, 527. 151375.

N

Neil, Rachel C., Cabrera, Maria Gomez, and Uthicke, Sven (2022) Juvenile age and available coral species modulate transition probability from herbivory to corallivory in Acanthaster cf. solaris (Crown-of-Thorns Seastar). Coral Reefs, 41. pp. 843-848.

O

Oleksyn, Semonn, Tosetto, Louise, Raoult, Vincent, Joyce, Karen E., and Williamson, Jane E. (2021) Going batty: the challenges and opportunities of using drones to monitor the behaviour and habitat use of rays. Drones, 5 (1). 12.

P

Pacoureau, Nathan, Rigby, Cassandra L., Kyne, Peter M., Sherley, Richard B., Winker, Henning, Carlson, John K., Fordham, Sonja V., Barreto, Rodrigo, Fernando, Daniel, Francis, Malcolm P., Jabado, Rima W., Herman, Katelyn B., Liu, Kwang-Ming, Marshall, Andrea D., Pollom, Riley A., Romanov, Evgeny V., Simpfendorfer, Colin A., Yin, Jamie S., Kindsvater, Holly K., and Dulvy, Nicholas K. (2021) Half a century of global decline in oceanic sharks and rays. Nature, 589. pp. 567-571.

R

Raudino, Holly C., Cleguer, Christophe, Hamel, Melanie A., Swaine, Michael, and Waples, Kelly A. (2022) Species identification of morphologically similar tropical dolphins and estimating group size using aerial imagery in coastal waters. Mammalian Biology, 102. pp. 829-839.

Roscher, Matthew B., Allison, Edward H., Mills, David J., Eriksson, Hampus, Hellebrandt, Denis, and Andrew, Neil L. (2022) Sustainable development outcomes of livelihood diversification in small-scale fisheries. Fish and Fisheries, 23 (4). pp. 910-925.

Raoult, Vincent, Grant, Michael I., Barbosa Martins, Ana Paula, Feitosa, Leonardo Manir, Braccini, Matias, Cardeñosa, Diego, Carlson, John, Chin, Andrew, Curtis, Tobey, Carvalho Costa, Luís Fernando, Rodrigues Filho, Luís Fernando, Giarrizzo, Tommaso, Nunes, Jorge Luiz S., Sales, João Bráullio L., Williamson, Jane E., and Simpfendorfer, Colin (2021) Assigning shark fin origin using species distribution models needs a reality check. Biology Letters, 17 (7).

Raoult, Vincent, Tosetto, Louis, Harvey, Courtney, Nelson, Tess M., Reed, Josh, Parikh, Aashi, Chan, Alysha J., Smith, Timothy M., and Williamson, Jane E. (2020) Remotely operated vehicles as alternatives to snorkellers for video-based marine research. Journal of Experimental Marine Biology and Ecology, 522. 151253.

S

Sherman, C. Samantha, Simpfendorfer, Colin A., Pacoureau, Nathan, Matsushiba, Jay H., Yan, Helen F., Walls, Rachel H.L., Rigby, Cassandra L., Vanderwright, Wade J., Jabado, Rima W., Pollom, Riley A., Carlson, John K., Charvet, Patricia, Bin Ali, Ahmad, Fahmi, Cheok, Jessica, Derrick, Danielle H., Herman, Katelyn B., Finucci, Brittany, Eddy, Tyler D., Palomares, Maria Lourdes D., Avalos-Castillo, Christopher G., Kinattumkara, Bineesh, Blanco-Parra, María del Pilar, Dharmadi, Espinoza, Mario, Fernando, Daniel, Haque, Alifa B., Mejía-Falla, Paola A., Navia, Andrés F., Pérez-Jiménez, Juan Carlos, Utzurrum, Jean, Yuneni, Ranny R., and Dulvy, Nicholas K. (2023) Half a century of rising extinction risk of coral reef sharks and rays. Nature Communications, 14. 15.

Saleh, Alzayat (2020) Developing deep learning methods for aquaculture applications. Masters (Research) thesis, James Cook University.

T

Terzin, Marko, Laffy, Patrick W., Robbins, Steven, Yeoh, Yun Kit, Frade, Pedro R., Glasl, Bettina, Webster, Nicole S, and Bourne, David G. (2024) The road forward to incorporate seawater microbes in predictive reef monitoring. Environmental Microbiome, 19. 5.

W

Webster, Emily G., Hamann, Mark, Shimada, Takahiro, Limpus, Colin, and Duce, Stephanie (2022) Space-use patterns of green turtles in industrial coastal foraging habitat: Challenges and opportunities for informing management with a large satellite tracking dataset. Aquatic Conservation: marine and freshwater ecosystems, 32 (6). pp. 1041-1056.

Wilson, Shaun K., Fulton, Christopher J., Graham, Nicholas A.J., Abesamis, Rene A., Berkstrom, Charlotte, Coker, Darren J., Depczynski, Martial, Evans, Richard D., Fisher, Rebecca, Goetze, Jordan, Hoey, Andrew, Holmes, Thomas H., Kulbicki, Michel, Noble, Mae, Robinson, James P.W., Bradley, Michael, Akerlund, Carolina, Barrett, Luke T., Bucol, Abner A., Birt, Matthew J., Chacin, Dinorah H., Chong-Seng, Karen M., Eggertsen, Linda, Eggertsen, Maria, Ellis, David, Leung, Priscilla T.Y., Lam, Paul K.S., van Lier, Joshua, Matis, Paloma A., Perez-Matus, Alejandro, Piggott, Camilla V.H., Radford, Ben T., Tano, Stina, and Tinkler, Paul (2022) The contribution of macroalgae-associated fishes to small-scale tropical reef fisheries. Fish and Fisheries, 23 (4). pp. 847-861.