Doll, Peter C., Munday, Philip L., Bonin, Mary C., and Jones, Geoffrey P. (2021) Habitat specialisation and overlap in coral reef gobies of the genus Eviota (Teleostei: Gobiidae). Marine Ecology-Progress Series, 677. pp. 81-94.

Sambrook, Katie, Bonin, Mary C., Bradley, Michael, Cumming, Graeme S., Duce, Stephanie, Andréfouët, Serge, and Hoey, Andrew S. (2020) Broadening our horizons: seascape use by coral reef-associated fishes in Kavieng, Papua New Guinea, is common and diverse. Coral Reefs, 39. pp. 1187-1197.

Jones, G.P., Barone, G., Sambrook, K., and Bonin, M.C. (2020) Isolation promotes abundance and species richness of fishes recruiting to coral reef patches. Marine Biology, 167. 167.

Sambrook, Katie, Hoey, Andrew S., Andréfouët, Serge, Cumming, Graeme S., Duce, Stephanie, and Bonin, Mary C. (2019) Beyond the reef: the widespread use of non‐reef habitats by coral reef fishes. Fish and Fisheries, 20 (5). pp. 903-920.

Frisch, Ashley J., Hobbs, Jean-Paul A., Hansen, Scott T., Williamson, David H., Bonin, Mary C., Jones, Geoffrey P., and Rizzari, Justin R. (2019) Recovery potential of mutualistic anemone and anemonefish populations. Fisheries Research, 218. pp. 1-9.

Bostrom Einarsson, Lisa, Bonin, Mary C., Moon, Steve, and Firth, Scott (2018) Environmental impact monitoring of household vinegar-injections to cull crown-of-thorns starfish, Acanthaster spp. Ocean & Coastal Management, 155. pp. 83-89.

Bostrom Einarsson, Lisa, Bonin, Mary C., Munday, Philip L., and Jones, Geoffrey P. (2018) Loss of live coral compromises predator-avoidance behaviour in coral reef damselfish. Scientific Reports, 8. 7795.

Almany, Glenn R., Planes, Serge, Thorrold, Simon R., Berumen, Michael L., Bode, Michael, Saenz-Agudelo, Pablo, Bonin, Mary C., Frisch, Ashley J., Harrison, Hugo B., Messmer, Vanessa, Nanninga, Gerrit B., Priest, Mark A., Srinivasan, Maya, Sinclair-Taylor, Tane, Williamson, David H., and Jones, Geoffrey P. (2017) Larval fish dispersal in a coral-reef seascape. Nature Ecology & Evolution, 1 (6). pp. 1-4.

Wen, Colin K.C., Bonin, Mary C., Harrison, Hugo B., Williamson, David H., and Jones, Geoffrey (2016) Dietary shift in juvenile coral trout (Plectropomus maculatus) following coral reef degradation from a flood plume disturbance. Coral Reefs, 35 (2). pp. 451-455.

Bonin, Mary C., Harrison, Hugo B., Williamson, David H., Frisch, Ashley J., Saenz-Agudelo, Pablo, Berumen, Michael L., and Jones, Geoffrey P. (2016) The role of marine reserves in the replenishment of a locally impacted population of anemonefish on the Great Barrier Reef. Molecular Ecology, 25 (2). pp. 487-499.

Bonin, Mary C., Saenz-Agudelo, Pablo, Harrison, Hugo B., Nanninga, Gerrit B., van der Meer, Martin H., Mansour, Hicham, Perumal, Sadhavisan, Jones, Geoffrey P., and Berumen, Michael L. (2016) Characterization and cross-amplification of microsatellite markers in four species of anemonefish (Pomacentridae, Amphiprion spp.). Marine Biodiversity, 46 (1). pp. 135-140.

Williamson, David H., Harrison, Hugo B., Almany, Glenn R., Berumen, Michael L., Bode, Michael, Bonin, Mary C., Choukroun, Severine, Doherty, Peter J., Frisch, Ashley J., Saenz-Agudelo, Pablo, and Jones, Geoffrey P. (2016) Large-scale, multidirectional larval connectivity among coral reef fish populations in the Great Barrier Reef Marine Park. Molecular Ecology, 25 (24). pp. 6039-6054.

Sambrook, Katie, Jones, Geoffrey P., and Bonin, Mary C. (2016) Life on the edge: coral reef fishes exhibit strong responses to a habitat boundary. Marine Ecology Progress Series, 561. pp. 203-215.

Bonin, Mary C., Boström-Einarsson, Lisa, Munday, Philip L., and Jones, Geoffrey P. (2015) The prevalence and importance of competition among coral reef fishes. Annual Review of Ecology, Evolution, and Systematics, 46. pp. 169-190.

Boström-Einarsson, Lisa, Bonin, Mary C., Munday, Philip L., and Jones, Geoffrey P. (2014) Habitat degradation modifies the strength of interspecific competition in coral dwelling damselfishes. Ecology, 95 (11). pp. 3056-3067.

Boström-Einarsson, Lisa, Bonin, Mary C., Munday, Philip L., and Jones, Geoffrey P. (2013) Strong intraspecific competition and habitat selectivity influence abundance of a coral-dwelling damselfish. Journal of Experimental Marine Biology and Ecology, 448. pp. 85-92.

Bonin, M.C. (2012) Specializing on vulnerable habitat: Acropora selectivity among damselfish recruits and the risk of bleaching-induced habitat loss. Coral Reefs, 31 (1). pp. 287-297.

Bonin, Mary C., Almany, Glenn R., and Jones, Geoffrey P. (2011) Contrasting effects of habitat loss and fragmentation on coral-associated reef fishes. Ecology, 92 (7). pp. 1503-1512.

Bonin, Mary Catherine (2010) Patterns of microhabitat specialization and the consequences of coral degradation for coral-associated reef fishes. PhD thesis, James Cook University.

Bonin, Mary C., Munday, Philip L., McCormick, Mark I., Srinivasan, Maya, and Jones, Geoffrey P. (2009) Coral-dwelling fishes resistant to bleaching but not to mortality of host corals. Marine Ecology Progress Series, 394. pp. 215-222.

Bonin, M.C., Srinivasan, M., Almany, G.R., and Jones, G.P. (2009) Interactive effects of interspecifc competition and microhabitat on early post-settlement survival in a coral reef fish. Coral Reefs, 28 (1). pp. 265-274.