Lewis, S., James, C., and Bainbridge, Z. (2023) Water quality signatures of pristine and near-pristine landscapes in the Great Barrier Reef Catchment Area. Report. TropWATER, James Cook University, Townsville, QLD, Australia.

Campbell, Cherie J., James, Cassandra S., Morris, Kaylene, Nicol, Jason M., Thomas, Rachael F., Nielsen, Daryl L., Gehrig, Susan L., Palmer, Gary J., Wassens, Skye, Dyer, Fiona, Southwell, Mark, Watt, Robin J., Bond, Nick R., and Capon, Samantha J. (2022) Blue, green and in-between: objectives and approaches for evaluating wetland flow regimes based on vegetation outcomes. Marine and Freshwater Research, 73. pp. 1212-1224.

Marsh, Helene, Albouy, Camille, Arraut, Eduardo, Castelblanco-Martinez, Delma Nataly, Collier, Catherine, Edwards, Holly, James, Cassandra, and Keith-Diagne, Lucy (2022) How Might Climate Change Affect the Ethology and Behavioral Ecology of Dugongs and Manatees? In: Marsh, Helene, (ed.) Ethology and Behavioral Ecology of Sirenia. Ethology and Behavioral Ecology of Marine Mammals . Springer, Cham, Switzerland, pp. 351-406.

Moran, D., Robson, B., Gruber, R., Waterhouse, J., Logan, M., Petus, C., Howley, C., Lewis, S., Tracey, D., James, C., Mellors, J., Bove, U., Davidson, J., Glasson, K., Lefevre, C., Macadam, A., Shanahan, M., Vasile, R., Zagorskis, I., and Shellberg, J. (2022) Marine Monitoring Program: Annual Report for Inshore Water Quality Monitoring 2020-2021. Report. Great Barrier Reef Marine Park Authority, Townsville, QLD, Australia.

Lewis, Stephen E., Bartley, Rebecca, Wilkinson, Scott, Bainbridge, Zoe T., Kinsey-Henderson, Anne, James, Cassandra S., Irvine, Scott A., and Brodie, Jon E. (2021) Land use change in the river basins of the Great Barrier Reef, 1860 to 2019: a foundation for understanding environmental history across the catchment to reef continuum. Marine Pollution Bulletin, 166. p. 112193.

Lewis, S., Bainbridge, Z., Stevens, T., Garzon-George, A., Bahador, M., Burton, J., Rezaei Rasht, M., James, C., Smithers, S., and Olley, J. (2020) What’s really damaging the Reef?: Tracing the origin and fate of the ecologically detrimental sediment and associated bioavailable nutrients. Report. Reef and Rainforest Research Centre, Cairns, QLD, Australia.

Graham, Erin M., Reside, April E., Atkinson, Ian, Baird, Daniel, Hodgson, Lauren, James, Cassandra S., and VanderWal, Jeremy J. (2019) Climate change and biodiversity in Australia: a systematic modelling approach to nationwide species distributions. Australasian Journal of Environmental Management, 26 (2). pp. 112-123.

Arthington, Angela H., Mackay, Steve J., Ronan, Mike, James, Cassandra S., and Kennard, Mark J. (2019) Freshwater wetlands of Moreton Bay Quandamooka and catchments: Biodiversity, ecology, threats and management. In: Tibbetts, Ian R., Rothlisberg, Peter C., Neil, David C., Homburg, Tamara A., Brewer, David T., and Arthington, Angela H., (eds.) Moreton Bay Quandamooka & Catchment: Past, present, and future. The Moreton Bay Foundation, Brisbane, Queensland, Australia, pp. 319-333.

James, Cassandra S., Reside, April E., VanDerWal, Jeremy, Pearson, Richard G., Burrows, Damien, Capon, Samatha J., Harwood, Thomas D., Hodgson, Lauren, and Waltham, Nathan J. (2017) Sink or swim? potential for high faunal turnover in Australian rivers under climate change. Journal of Biogeography, 44 (3). pp. 489-501.

Templeman, Shelley, Baker, Ronnie, and James, Cassandra (2017) Carpentaria Gold Receiving Environment Monitoring Program design version 2: report 17/33. Report. James Cook University, Townsville, QLD, Australia.

James, Cassandra, Templeman, Shelley, and Burrows, Damien (2017) Townsville field training area ecological monitoring November 2016 - July 2017. External Commissioned Report. James Cook University, Townsville, QLD, Australia.

Capon, Samatha, James, Cassandra, and Reid, Simon (2016) Vegetation of Australian Riverine Landscapes: biology, ecology and management. CSIRO Publishing, Melbourne, VIC, Australia.

Templeman, Shelley, and James, Cassandra (2016) Mt Leyshon Mine Receiving Environment Monitoring Program Report 1 Nov 2014 to 31 Oct 2015 Vol 1 & 2. Report. Centre for Tropical Water and Aquatic Ecosystem Research (TropWATER), Townsville, QLD, Australia.

Mackay, Stephen J., and James, Cassandra S. (2016) Aquatic vascular macrophytes of Australias riverine systems. In: Capon, Samatha J., James, Cassandra S., and Reid, Michael, (eds.) Vegetation of Australian Riverine Landscapes: biology, ecology and management. CSIRO Publishing, Melbourne, VIC, Australia, pp. 87-102.

James, Cassandra S., Reid, Michael A., and Capon, Samatha J. (2016) Climate change and the future of Australian riverine vegetation. In: Capon, Samatha J., James, Cassandra S., and Reid, Michael, (eds.) Vegetation of Australian Riverine Landscapes: biology, ecology and management. CSIRO publishing, Melbourne, VIC, Australia, pp. 387-407.

James, Cassandra S., Mackay, Stephen J., Arthington, Angela H., Capon, Samatha J., Barnes, Anna, and Pearson, Ben (2016) Does stream flow structure woody riparian vegetation in subtropical catchments? Ecology and Evolution, 6 (16). pp. 5950-5963.

Maxwell, Adam, Capon, Samatha J., and James, Cassandra S. (2016) Effects of flooding on seedling establishment in two Australian riparian trees with contrasting distributions; Acacia stenophylla A. Cunn. ex Benth. and Casuarina cunninghamiana Miq. Ecohydrology, 9 (6). pp. 942-949.

Capon, Samatha, James, Cassandra, and George, Amy (2016) Riverine trees and shrubs. In: Capon, Samatha J., James, Cassandra S., and Reid, Michael, (eds.) Vegetation of Australian Riverine Landscapes: biology, ecology and management. CSIRO Publishing, Melbourne, VIC, Australia, pp. 119-141.

Capon, Samatha J., Porter, John, and James, Cassandra S. (2016) Vegetation of Australia's desert river landscapes. In: Capon, Samatha J., James, Cassandra S., and Reid, Michael, (eds.) Vegetation of Australian Riverine Landscapes: biology, ecology and management. CSIRO Publishing, Melbourne, VIC, Australia, pp. 239-258.

Templeman, Shelley, and James, Cassandra (2015) Carpentaria Gold Receiving Environment Monitoring Program Design Report 15/71. Report. Centre for Tropical Water and Aquatic Ecosystem Research (TropWATER), Townsville, QLD, Australia.

Templeman, S., and James, C. (2015) Carpentaria Gold Review of Historic Information and Data Report 15/70. Report. Centre for Tropical Water and Aquatic Ecosystem Research (TropWATER), Townsville, QLD, Australia.

James, Cassandra S., Capon, Samatha J., and Quinn, Gerry P. (2015) Nurse plant effects of a dominant shrub (Duma florulenta) on understorey vegetation in a large, semiarid wetland in relation to flood frequency and drying. Journal of Vegetation Science, 26 (5). pp. 985-994.

Templeman, Shelley, Butler, Barry, and James, Cassandra (2015) Closed Mt Leyshon Mine Lease Receiving Environment Monitoring Program 1 Nov 2013 to 31 Oct 2014 Vol 1 & 2. Report. Centre for Tropical Water and Aquatic Ecosystem Research (TropWATER), Townsville, QLD, Australia.

Templeman, Shelley, and James, Cassandra (2015) Challenges to monitoring groundwater contaminants in riparian and terrestrial vegetation. In: Abstracts from the 2015 ASL Conference. p. 126. From: The Changing Freshwater Landscape, 23-26 November 2015, Wellington, NZ.

Mackay, Stephen J., Arthington, Angela H., and James, Cassandra S. (2014) Classification and comparison of natural and altered flow regimes to support an Australian trial of the Ecological Limits of Hydrologic Alteration framework. Ecohydrology, 7 (6). pp. 1485-1507.

Hilbert, David W., Hill, Rosemary, Moran, Catherine, Turton, Stephen M., Bohnet, Iris C., Marshall, Nadine A., Pert, Petina L., Stoeckl, Natalie, Murphy, Helen T., Reside, April E., Laurance, Susan G.W., Alamgir, Mohammed, Coles, Rob, Crowley, Gabriel, Curnock, Matt, Dale, Allan, Duke, Norman C., Esparon, Michelle, Farr, Marina, Gillet, Sarah, Gooch, Margaret, Fuentes, Mariana, Hamann, Mark, James, Cassandra S., Kroon, Frederieke J., Larson, Silva, Lyons, Pethie, Marsh, Helene, Meyer Steiger, Dagmar, Sheaves, Marcus, and Westcott, David (2014) Climate change issues and impacts in the Wet Tropics NRM cluster region. Report. James Cook University, Cairns, QLD, Australia.

Arthington, A.H., Rolls, R.J., Sternberg, D., Mackay, S.J., and James, C.S. (2014) Fish assemblages in subtropical rivers: low-flow hydrology dominates hydro-ecological relationships. Hydrological Sciences Journal, 59 (3-4). pp. 594-604.

Hilbert, David W., Hill, Rosemary, Moran, Catherine, Turton, Steve M., Bohnet, Iris C., Marshall, Nadine A., Pert, Petina L., Stoeckl, Natalie, Murphy, Helen T., Reside, April E., Laurance, Susan G.W., Alamgir, Mohammed, Coles, Rob, Crowley, Gabriel, Curnock, Matthew, Dale, Allan, Duke, Norman C., Esparon, Michelle, Farr, Marina, Gillet, Sarah, Gooch, Margaret, Fuentes, Marianna, Hamann, Mark, James, Cassandra S., Kroon, Frederieke J., Larson, Silva, Lyons, Pethie, Marsh, Helene, Meyer Steiger, Dagmar, Sheaves, Marcus, and Westcott, David A. (2014) Key messages extracted from the Synthesis of Climate Change Issues and Impacts in the Wet Tropics NRM Cluster Region. Report. James Cook University, Cairns, QLD, Australia.

Fisher, Jane, James, Cassandra S., Moore, Victoria L., and Moss, Brian (2013) Dinophyta characterise nitrogen scarcity more strongly than cyanobacteria in moderately deep lakes. Acta protozoologica, 52 (3). pp. 203-216.

James, Cassandra, Vanderwal, Jeremy, Capon, Samantha, Hodgson, Lauren, Waltham, Nathan, Ward, Doug, Anderson, Barbara, and Pearson, Richard (2013) Identifying Climate Refuges for Freshwater Biodiversity Across Australia: identification and characterisation of freshwater refuges in the face of climate change. National Climate Change Adaptation Research Facility, Gold Coast, QLD, Australia.

Fisher, Jane, Barker, Tom, James, Cassandra, and Clarke, Stewart (2009) Water quality in chronically nutrient-rich lakes: the example of the Shropshire-Cheshire meres. Freshwater Reviews, 2 (1). pp. 79-99.

Wang, Xiqin, Zhang, Yuan, and James, Cassandra (2009) Approaches to providing and managing environmental flows in China. International Journal of Water Resources Development, 25 (2). pp. 283-300.

Capon, S.J., James, C.S., Williams, L., and Quinn, G.P. (2009) Responses to flooding and drying in seedlings of a common Australian desert floodplain shrub: Muehlenbeckia florulenta Meisn. (tangled lignum). Environmental and Experimental Botany, 66 (2). pp. 178-185.

Gippel, Christopher J., Bond, Nick R., James, Cassandra S., and Wang, Xiqin (2009) An asset-based, holistic, environmental flows assessment approach. International Journal of Water Resources Development, 25 (2). pp. 301-330.

James, Cassandra S., Thoms, Martin C., and Quinn, Gerry P. (2008) Zooplankton dynamics from inundation to drying in a complex ephemeral floodplain-wetland. Aquatic Sciences, 70 (3). pp. 259-271.