Davies, Claire H., Coughlan, Alex, Hallegraeff, Gustaaf, Ajani, Penelope, Armbrecht, Linda, Atkins, Natalia, Bonham, Prudence, Brett, Steve, Brinkman, Richard, Burford, Michele, Clementson, Lesley, Coad, Peter, Coman, Frank, Davies, Diana, Dela-Cruz, Jocelyn, Devlin, Michelle, Edgar, Steven, Eriksen, Ruth, Furnas, Miles, Hassler, Christel, Hill, David, Holmes, Michael, Ingleton, Tim, Jameson, Ian, Leterme, Sophie C., Lønborg, Christian, McLaughlin, James, McEnnulty, Felicity, Mckinnon, A. David, Miller, Margaret, Murray, Shauna, Nayar, Sasi, Patten, Renee, Pritchard, Tim, Proctor, Roger, Purcell-Meyerink, Diane, Raes, Eric, Rissik, David, Ruszczyk, Jason, Slotwinski, Anita, Swadling, Kerrie M., Tattersall, Katherine, Thompson, Peter, Thomson, Paul, Tonks, Mark, Trull, Thomas W., Uribe-Palomino, Julian, Waite, Anya M., Yauwenas, Rouna, Zammit, Anthony, and Richardson, Anthony J. (2016) A database of marine phytoplankton abundance, biomass and species composition in Australian waters. Scientific Data, 3. 160043. pp. 1-12.

Brodie, Jon, Waterhouse, Jane, Maynard, Jeffrey, Bennett, John, Furnas, Miles, Devlin, Michelle, Lewis, Stephen, Collier, Catherine, Schaffelke, Britta, Fabricius, Katharina, Petus, Caroline, da Silva, Eduardo, Zeh, Daniel, Randall, Lucy, Brando, Vittorio, McKenzie, Len, O'Brien, Dominique, Smith, Rachael, Warne, Michael, Brinkman, Richard, Tonin, Hemerson, Bainbridge, Zoe, Bartley, Rebecca, Negri, Andrew, Turner, Ryan, Davis, Aaron, Bentley, Christie, Mueller, Jochen, Alvarez-Romero, Jorge, Henry, Nyssa, Waters, David, Yorkston, Hugh, and Tracey, Dieter (2013) Assessment of the relative risk of water quality to ecosystems of the Great Barrier Reef. A report to the Department of the Environment and Heritage Protection, Queensland Government, Brisbane - Report 13/28. Report. James Cook University, Townsville, QLD, Australia.

Ceccarelli, Daniela M., McKinnon, A. David, Andréfouët, Serge, Allain, Valerie, Young, Jock, Gledhill, Daniel C., Flynn, Adrian, Bax, Nicholas J., Beaman, Robin, Borsa, Philippe, Brinkman, Richard, Bustamante, Rodrigo H., Campbell, Robert, Cappo, Mike, Cravatte, Sophie, D'Agata, Stéphanie, Dichmont, Catherine M., Dunstan, Piers K., Dupouy, Cécile, Edgar, Graham, Farman, Richard, Furnas, Miles, Garrigue, Claire, Hutton, Trevor, Kulbicki, Michel, Letourneur, Yves, Lindsay, Dhugal, Menkes, Christophe, Mouillot, David, Parravicini, Valeriano, Payri, Claude, Pelletier, Bernard, Richer de Forges, Bertrand, Ridgway, Ken, Rodier, Martine, Samadi, Sarah, Schoeman, David, Skewes, Tim, Swearer, Steven, Vigliola, Laurent, Wantiez, Laurent, Williams, Alan, Williams, Ashley, and Richardson, Anthony J. (2013) The Coral Sea: physical environment, ecosystem status and biodiversity assets. In: Lesser, Michael, (ed.) Advances in Marine Biology. Advances in Marine Biology, 66 . Elsevier, Amsterdam, The Netherlands, pp. 213-290.

Young, Jock W., McKinnon, A. David, Ceccarelli, Daniela, Brinkman, Richard, Bustamante, Rodrigo H., Cappo, Mike, Dichmont, Cathy, Doherty, Peter, Furnas, Miles, Gledhill, Daniel, Griffiths, Shane, Hutton, Trevor, Ridgway, Ken, Smith, David, Skewes, Tim, Williams, Alan, and Richardson, Anthony J. (2012) Workshop on the ecosystem and fisheries of the Coral Sea: an Australian perspective on research and management. Reviews in Fish Biology and Fisheries, 22 (3). pp. 827-834.

McKinna, Lachlan I.W., Furnas, Miles J., and Ridd, Peter V. (2011) A simple, binary classification algorithm for the detection of Trichodesmium spp. within the Great Barrier Reef using MODIS imagery. Limnology and Oceanography: Methods, 9. pp. 50-66.

Bainbridge, S.J., Steinberg, C.R., Heron, M.L., and Furnas, M.J. (2010) Integrating observation systems: an example from the Great Barrier Reef. In: Proceedings of Oceans 2010 IEEE. From: Oceans 10 IEEE Sydney, 24-27 May 2010, Sydney, NSW, Australia.

Mitchell, Alan, Brodie, Jon, and Furnas, Miles (2010) Report on AIMS river nutrient data collected from downstream sites in major Queensland rivers draining to the Great Barrier Reef lagoon, 1987-2000. Report. James Cook University, Townsville, QLD, Australia. (Unpublished)

Mitchell, A., Reghenzani, J., Faithful, J., Furnas, M., and Brodie, J. (2009) Relationships between land use and nutrient concentrations in streams draining a ‘wet-tropics’ catchment in northern Australia. Marine and Freshwater Research, 60 (11). pp. 1097-1108.

Glibert, PM, Azanza, R, Burford, M, Furuya, K, Abal, E, Al-Azri, A, Al-Yamani, F, Andersen, P, Anderson, DM, Beardall, J, Berg, GM, Brand, L, Bronk, D, Brookes, J, Burkholder, J-AM, Cembella, A, Cochlan, WP, Collier, JL, Collos, Y, Diaz, D, Doblin, M, Drennen, T, Dyhrman, S, Fukuyo, Y, Furnas, M, Galloway, J, Graneli, E, Ha, DV, Hallegraeff, G, Harrison, J, Harrison, PJ, Heil, CA, Heimann, Kirsten, Howarth, R, Jauzein, C, Kana, AA, Kana, TM, Kim, H, Kudela, R, Legrand, C, Mallin, M, Mulholland, M, Murray, S, ONeil, Judith, Pitcher, G, Qi, Y, Rabalais, N, Raine, R, Seitzinger, S, Salomon, PS, Solomon, C, Stoecker, DK, Usup, G, Wilson, J, Yin, K, Zhou, M, and Zhu, M (2008) Ocean urea fertilization for carbon credits poses high ecological risks. Marine Pollution Bulletin, 56 (6). pp. 1049-1056.

Brodie, J., De'ath, G., Devlin, M., Furnas, M., and Wright, M. (2007) Spatial and temporal patterns of near-surface chlorophyll a in the Great Barrier Reef lagoon. Marine and Freshwater Research, 58 (4). pp. 342-353.

Luick, John L., Mason, Luciano, Hardy, Thomas, and Furnas, Miles J. (2007) Circulation in the Great Barrier Reef Lagoon using numerical tracers and in situ data. Continental Shelf Research, 27 (6). pp. 757-778.

Wooldridge, Scott, Brodie, Jon, and Furnas, Miles (2006) Exposure of inner-shelf reefs to nutrient enriched runoff entering the Great Barrier Reef Lagoon: post-European changes and the design of water quality targets. Marine Pollution Bulletin, 52 (11). pp. 1467-1479.

Furnas, Miles, Mitchell, Alan, Skuza, Michelle, and Brodie, Jon (2005) In the other 90%: phytoplankton responses to enhanced nutrient availability in the Great Barrier Reef lagoon. Marine Pollution Bulletin, 51 (1). pp. 253-265.

Moss, Andrew, Brodie, Jon, and Furnas, Miles (2005) Water quality guidelines for the Great Barrier Reef World Heritage Area: a basis for development and preliminary values. Marine Pollution Bulletin, 51 (1). pp. 76-88.

Brodie, Jon , and Furnas, Miles (2003) Status of nutrient and sediment inputs from great Barrier Reef catchments and impacts on the Reef. In: Protecting the Values of Rivers, Wetlands and the Reef. From: 2nd National Conference on Aquatic Environments: Sustaining our Aquatic Environments - Implementing Solutions, 20 - 23 November 2001, Townsville, QLD, Australia.

Brodie, Jon E., McKergow, Lucy A., Prosser, Ian P., Furnas, Miles, Hughes, Andrew O., and Hunter, Heather (2003) Sources of sediment and nutrient exports to the Great Barrier Reef World Heritage Area. Report. Australian Centre for Tropical Freshwater Research, Townsville, Australia.

Wilson, Shaun K., Bellwood, David R., Choat, J. Howard, and Furnas, Miles J. (2003) Detritus in the epilithic algal matrix and its use by coral reef fishes. Oceanography and Marine Biology: an annual review, 41. pp. 279-309.

Brodie, J., Mitchell, A., Furnas, M., Haynes, D., Waterhouse, J., Ghonim, S., Morris, S., Yorkston, H., and Audas, D. (2003) Developing catchment pollutant load targets for the protection of the Great Barrier Reef. In: Protecting the Values of Rivers, Wetlands and the Reef. From: 2nd National Conference on Aquatic Environments: Sustaining our Aquatic Environments - Implementing Solutions, 20-23 November 2001, Townsville, QLD, Australia.