Salamena, Gerry Giliant, Heron, Scott F., Ridd, Peter V., and Whinney, James C. (2023) A risk assessment of marine plastics in coastal waters of a small island: Lessons from Ambon Island, eastern Indonesia. Regional Studies in Marine Science, 65. 103086.

Salamena, Gerry Giliant, Whinney, James C., Heron, Scott F., and Ridd, Peter (2022) Frontogenesis and estuarine circulation at the shallow sill of a tropical fjord: Insights from Ambon Bay, eastern Indonesia. Regional Studies in Marine Science, 56. 102696.

Salamena, Gerry Giliant, Whinney, James C., and Heron, Scott F. (2022) Vertical circulation due to deep-water renewal and phytoplankton blooms in the tropical fjord of Ambon Bay, eastern Indonesia. Journal of Marine Systems, 234. 103776.

Salamena, Gerry Giliant, Whinney, James C., Heron, Scott F., and Ridd, Peter (2021) Internal tidal waves and deep-water renewal in a tropical fjord: lessons from Ambon Bay, eastern Indonesia. Estuarine, Coastal and Shelf Science, 253. 107291.

Calvert, Brendan, Olsen, Alex, Whinney, James, and Rahimi Azghadi, Mostafa (2021) Robotic spot spraying of Harrisia cactus (Harrisia martinii) in grazing pastures of the Australian rangelands. Plants, 10 (10). 2054.

Olsen, Alex, Konovalov, Dmitry A., Philippa, Bronson, Ridd, Peter, Wood, Jake, Johns, Jamie, Banks, Wesley, Girgenti, Benjamin, Kenny, Owen, Whinney, James, Calvert, Brendan, Rahimi Azghadi, Mostafa, and White, Ronald D. (2019) DeepWeeds: a multiclass weed species image dataset for deep learning. Scientific Reports, 9. 2058.

Bird, Michael I., Brand, Michael, Diefendorf, Aaron F., Haig, Jordahna L., Hutley, Lindsay B., Levchenko, Vladimir, Ridd, Peter V., Rowe, Cassandra, Whinney, James, Wurster, Christopher M., and Zwart, Costijn (2019) Identifying the 'savanna' signature in lacustrine sediments in northern Australia. Quaternary Science Reviews, 203. pp. 233-247.

Whinney, James, Jones, Ross, Duckworth, Alan, and Ridd, Peter (2017) Continuous in situ monitoring of sediment deposition in shallow benthic environments. Coral Reefs, 36. pp. 521-533.

Waltham, Nathan, York, Paul, McKenna, Skye, Petus, Caroline, Devlin, Michelle, Rasheed, Michael, Campbell, Sean, Whinney, James, and Kane, Kevin (2017) Long term ambient water quality monitoring to support port management in the Great Barrier Reef World Heritage Area. In: Proceedings of the Australasian Coasts & Ports 2017 Conference. pp. 1125-1130. From: Australasian Coasts & Ports 2017 Conference: working with nature, 21-23 June 2017, Cairns, QLD, Australia.

Wenger, Amelia S., Whinney, James, Taylor, Brett, and Kroon, Frederieke (2016) The impact of individual and combined abiotic factors on daily otolith growth in a coral reef fish. Scientific Reports, 6. 28875. pp. 1-10.

Roop, Heidi A., Dunbar, Gavin B., Levy, Richard, Vandergoes, Marcus J., Forrest, Alexander L., Walker, Sharon L., Purdie, Jennifer, Upton, Phaedra, and Whinney, James (2015) Seasonal controls on sediment transport and deposition in Lake Ohau, South Island, New Zealand: implications for a high-resolution Holocene palaeoclimate reconstruction. Sedimentology, 62 (3). pp. 826-844.

Marchant, Ross, Stevens, Thomas, Choukroun, Severine, Combes, Gavin, Santarossa, Michael, Whinney, James, and Ridd, Peter (2014) A buoyant tethered sphere for marine current estimation. IEEE Journal of Oceanic Engineering, 39 (1). pp. 2-9.

Macdonald, Rachael K., Ridd, Peter V., Whinney, James C., Larcombe, Piers, and Neil, David T. (2013) Towards environmental management of water turbidity within open coastal waters of the Great Barrier Reef. Marine Pollution Bulletin, 74 (1). pp. 82-94.

Whinney, James Christopher (2007) Physical conditions on marginal coral reefs. PhD thesis, James Cook University.