Sinclair, Elizabeth A., Sherman, Craig D.H., Statton, John, Copeland, Craig, Matthews, Andrew, Waycott, Michelle, Van Dijk, Kor-Jent, Vergés, Adriana, Kajlich, Lana, McLeod, Ian M., and Kendrick, Gary A. (2021) Advances in approaches to seagrass restoration in Australia. Ecological Management and Restoration, 22 (1). pp. 10-21.

McKenzie, L.J., Collier, C.J., Langlois, L.A., Yoshida, R.L., Uusitalo, J., and Waycott, M. (2021) Marine Monitoring Program: Annual Report for Inshore Seagrass Monitoring 2019–20. Report. Great Barrier Reef Marine Park Authority, Townsville.

Tan, Yi Mei, Dalby, Oliver, Kendrick, Gary A., Statton, John, Sinclair, Elizabeth A., Fraser, Matthew W., Macreadie, Peter I., Gillies, Chris L., Coleman, Rhys, Waycott, Michelle, van Dijk, Kor-Jent, Vergés, Adriana, Ross, Jeff D., Campbell, Marnie L., Matheson, Fleur E., Jackson, Emma L., Irving, Andrew D., Govers, Laura, Connolly, Rod M., McLeod, Ian M., Rasheed, Michael A., Kirkman, Hugh, Flindt, Morgens R., Lange, Troels, Miller, Adam D,, and Sherman, Craig D.H. (2020) Seagrass restoration is possible: insights and lessons from Australia and New Zealand. Frontiers in Marine Science, 7. 617.

Collier, C.J., Carter, A.B., Rasheed, M., McKenzie, L., Udy, J., Coles, R., Brodie, J., Waycott, M., O’Brien, K.R., Saunders, M., Adams, M., Martin, K., Honchin, C., Petus, C., and Lawrence, E. (2020) An evidence-based approach for setting desired state in a complex Great Barrier Reef seagrass ecosystem: a case study from Cleveland Bay. Environmental and Sustainability Indicators, 7. 100042.

Udy, J., Waycott, M., Carter, A., Collier, C., Kilminster, K., Rasheed, M., McKenzie, L., McMahon, K., Maxwell, P., Lawrence, E., and Honchin, C. (2019) Monitoring Seagrass within the Reef 2050 Integrated Monitoring and Reporting Program: final report of the Seagrass Expert Group. Report. Great Barrier Reef Marine Park Authority, Townsville, QLD, Australia.

Duffy, J. Emmett, Benedetti-Cecchi, Lisandro, Trinanes, Joaquin, Muller-Karger, Frank E., Ambo-Rappe, Rohani, Boström, Christoffer, Buschmann, Alejandro H., Byrnes, Jarrett, Coles, Robert G., Creed, Joel, Cullen-Unsworth, Leanne C., Diaz-Pulido, Guillermo, Duarte, Carlos M., Edgar, Graham J., Fortes, Miguel, Goni, Gustavo, Hu, Chuanmin, Huang, Xiaoping, Hurd, Catriona L., Johnson, Craig, Konar, Brenda, Krause-Jensen, Dorte, Krumhansl, Kira, Macreadie, Peter, Marsh, Helene, McKenzie, Len J., Mieszkowska, Nova, Miloslavich, Patricia, Montes, Enrique, Nakaoka, Masahiro, Norderhaug, Kjell Magnus, Norlund, Lina M., Orth, Robert J., Prathep, Anchana, Putman, Nathan F., Samper-Villarreal, Jimena, Serrao, Ester A., Short, Frederick, Pinto, Isabel Sousa, Steinberg, Peter, Stuart-smith, Rick, Unsworth, Richard K.F., van Keulen, Mike, van Tussenbroek, Brigitta I., Wang, Mengqiu, Waycott, Michelle, Weatherdon, Lauren V., Wernberg, Thomas, and Yaakub, Siti Maryam (2019) Toward a coordinated global observing system for seagrasses and marine macroalgae. Frontiers in Marine Science, 6. 317. pp. 1-26.

Grech, Alana, Hanert, Emmanuel, McKenzie, Len, Rasheed, Michael, Thomas, Christopher, Tol, Samantha, Wang, Mingzhu, Waycott, Michelle, Wolter, Jolan, and Coles, Rob (2018) Predicting the cumulative effect of multiple disturbances on seagrass connectivity. Global Change Biology, 24 (7). pp. 3093-3104.

O'Brien, Katherine R., Waycott, Michelle, Maxwell, Paul, Kendrick, Gary A., Udy, James W., Ferguson, Angus J.P., Kilminster, Kieryn, Scanes, Peter, McKenzie, Len J., McMahon, Kathryn, Adams, Matthew P., Samper-Villarreal, Jimena, Collier, Catherine, Lyons, Mitchell, Mumby, Peter J., Radke, Lynda, Christianen, Marjolijn J.A., and Dennison, William C. (2018) Seagrass ecosystem trajectory depends on the relative timescales of resistance, recovery and disturbance. Marine Pollution Bulletin, 134. pp. 166-176.

York, Paul H., Smith, Timothy M., Coles, Rob G., McKenna, Skye A., Connolly, Rod M., Irving, Andrew D., Jackson, Emma L., McMahon, Kathryn, Runcie, John W., Sherman, Craig D.H., Sullivan, Brooke K., Trevathan-Tackett, Stacy M., Brodersen, Kasper E., Carter, Alex B., Ewers, Carolyn J., Lavery, Paul S., Roelfsema, Chris M., Sinclair, Elizabeth A., Strydom, Simone, Tanner, Jason E., van Dijk, Kor-jent, Warry, Fiona Y., Waycott, Michelle, and Whitehead, Sam (2017) Identifying knowledge gaps in seagrass research and management: an Australian perspective. Marine Environmental Research, 127. pp. 163-172.

Collier, C.J., Adams, M.P., Langlois, L., Waycott, M., O'Brien, K.R., Maxwell, P.S., and McKenzie, L. (2016) Thresholds for morphological response to light reduction for four tropical seagrass species. Ecological Indicators, 67. pp. 358-366.

Dichmont, Catherine M., Dutra, Leo X.C., Owens, Randall, Jebreen, Eddie, Thompson, Carolyn, Deng, Roy A., van Putten, Elizabeth I., Pascual, Ricardo, Dambacher, Jeffrey M., Warne, Michael St.J., Quinn, Ross H., Thébaud, Olivier, Bennett, John, Read, Mark, Wachenfeld, David, Davies, Julia, Garland, Anna, Dunning, Malcolm, Collier, Catherine, Waycott, Michelle, and Playford, Julia (2016) A generic method of engagement to elicit regional coastal management options. Ocean & Coastal Management, 124. pp. 22-32.

Dutra, Leo X.C., Dichmont, Catherine M., van Putten, Ingrid E., Thébaud, Oliver, Deng, Roy A., Pascual, Ricardo, Owens, Randall, Jebreen, Eddie, Thompson, Carolyn, Warne, M.St.J., Quinn, R., Bennett, J., Read, M., Wachenfeld, D., Collier, Catherine, Waycott, Michelle, Davies, J., Garland, A., Dunning, M., and Playford, J. (2016) How important is the coast? A survey of coastal objectives in an Australian regional city. Marine Policy, 71. pp. 229-241.

Field, Ashley R., Testo, Weston, Bostock, Peter D., Holtum, Joseph A.M., and Waycott, Michelle (2016) Molecular phylogenetics and the morphology of the Lycopodiaceae subfamily Huperzioideae supports three genera: Huperzia, Phlegmariurus and Phylloglossum. Molecular Phylogenetics and Evolution, 94 (Part B). pp. 635-657.

Grech, Alana, Wolter, Jolan, Coles, Rob, McKenzie, Len, Rasheed, Michael, Thomas, Christopher, Waycott, Michelle, and Hanert, Emmanuel (2016) Spatial patterns of seagrass dispersal and settlement. Diversity and Distributions, 22 (11). pp. 1150-1162.

Kilminster, Kieryn, McMahon, Kathryn, Waycott, Michelle, Kendrick, Gary A., Scanes, Peter, McKenzie, Len, O'Brien, Katherine R., Lyons, Mitchell, Ferguson, Angus, Maxwell, Paul, Glasby, Tim, and Udy, James (2015) Unravelling complexity in seagrass systems for management: Australia as a microcosm. Science of the Total Environment, 534. pp. 97-109.

Unsworth, Richard K.F., Collier, Catherine J., Waycott, Michelle, McKenzie, Len J., and Cullen-Unsworth, Leanne C. (2015) A framework for the resilience of seagrass ecosystems. Marine Pollution Bulletin, 100 (1). pp. 34-46.

Van Dijk, Kor-Jent, Mellors, Jane, and Waycott, Michelle (2014) Development of multiplex microsatellite PCR panels for the seagrass Thalassia hemprichii (Hydrocharitaceae). Applications in Plant Sciences, 2 (11). 1400078. pp. 1-5.

Collier, C.J., and Waycott, M. (2014) Temperature extremes reduce seagrass growth and induce mortality. Marine Pollution Bulletin, 83 (2). pp. 483-490.

Collier, Catherine J., Villacorta-Rath, Cecilia, van Dijk, Kor-jent, Takahashi, Miwa, and Waycott, Michelle (2014) Seagrass proliferation precedes mortality during hypo-salinity events: a stress-induced morphometric response. PLoS ONE, 9 (4). e94014. pp. 1-11.

Blair, David, McMahon, Adrian, McDonald, Brenda, Tikel, Daniela, Waycott, Michelle, and Marsh, Helene (2014) Pleistocene sea level fluctuations and the phylogeography of the dugong in Australian waters. Marine Mammal Science, 30 (1). pp. 104-121.

Dichmont, Catherine M., Dutra, Leo X.C., van Putten, Ingrid, Deng, Roy, Owens, Randall, Jebreen, Eddie, Thompson, Carolyn, Pascual, Richardo, Warne, Michael, Quinn, Ross, Thébaud, Olivier, Bennett, John, Read, Mark, Wachenfeld, David, Davies, Julia, Garland, Anna, Dunning, Malcolm, Waycott, Michelle, Collier, Catherine, Dambacher, Jeffrey M., Playford, Julia, Harm, Rachel, Gribble, Neil, and Pitcher, Roland (2014) Design and implementation of management strategy evaluation for the Great Barrier Reef inshore (MSE-GBR). Report. Reef and Rainforest Research Centre, Cairns, Australia.

Collier, Catherine J., Devlin, Michelle, Langlois, Lucas, McKenzie, Len J., Petus, Caroline, Da Silva, Eduardo Teixeira, McMahon, Kathryn, Adams, Matthew, O'Brien, Kate, Statton, John, and Waycott, Michelle (2014) Final report on thresholds and indicators of declining water quality as tools for tropical seagrass management. Report. James Cook University, Townsville, Australia.

Chong, Caroline, Edwards, Will, Pearson, Richard, and Waycott, Michelle (2013) Sprouting and genetic structure vary with flood disturbance in the tropical riverine paperbark tree, Melaleuca leucadendra (Myrtaceae). American Journal of Botany, 100 (11). pp. 2250-2260.

Bell, Johann D., Ganachaud, Alexandre, Gehrke, Peter C., Griffiths, Shane P., Hobday, Alistair J., Hoegh-Guldberg, Ove, Johnson, Johanna E., Le Borgne, Robert, Lehodey, Patrick, Lough, Janice M., Matear, Richard J., Pickering, Timothy D., Pratchett, Morgan S., Sen Gupta, Alex, Senina, Inna, and Waycott, Michelle (2013) Mixed responses of tropical Pacific fisheries and aquaculture to climate change. Nature Climate Change, 3 (6). pp. 591-599.

Reynolds, Laura K., Waycott, Michelle, McGlathery, Karen J., Orth, Robert J., and Zieman, Joseph C. (2012) Eelgrass restoration by seed maintains genetic diversity: case study from a coastal bay system. Marine Ecology Progress Series, 448. pp. 223-233.

Collier, C.J., Waycott, M., and McKenzie, L.J. (2012) Light thresholds derived from seagrass loss in the coastal zone of the northern Great Barrier Reef, Australia. Ecological Indicators, 23. pp. 211-219.

Fox, Samantha, Waycott, Michelle, Blair, David, and Luly, Jon (2012) Regional genetic differentiation in the spectacled flying fox (Pteropus conspicillatus Gould). In: Haberle, Simon G/, and David, Bruno, (eds.) Peopled Landscapes: archaeological and biogeographic approaches to landscapes. Terra Australia, 34 . ANU E Press, Canberra, ACT, Australia, pp. 459-472.

Collier, Catherine J., Waycott, Michelle, and Ospina, Ana Giraldo (2012) Responses of four Indo-West Pacific seagrass species to shading. Marine Pollution Bulletin, 65 (4-9). pp. 342-354.

Verduin, Jennifer J., Van Dijk, Jent Kornelis, Kendrick, Gary A., Waycott, Michelle, Carruthers, Tim J. B., Cambridge, Marion L., Hovey, Renae, Krauss, Siegfried L., Lavery, Paul S., Les, Donald H., Lowe, Ryan J., Mascaro I Vidal, Oriol, Ooi, Jillian L. S., Orth, Robert J., Rivers, David O., Ruiz-Montoya, Leonardo, Sinclair, Elizabeth A., and Statton, John (2012) The central role of dispersal in the maintenance and persistence of seagrass populations. Bioscience, 62 (1). pp. 56-65.

Short, Fred T., Polidoro, Beth, Livingstone, Suzanne R., Carpenter, Kent E., Bandeira, Salomão, Bujang, Japar Sidik, Calumpong, Hilconida P., Carruthers, Tim J.B., Coles, Robert G., Dennison, William C., Erftemeijer, Paul L.A., Fortes, Miguel D., Freeman, Aaren S., Jagtap, T.G., Kamal, Abu Hena M., Kendrick, Gary A., Kenworthy, W. Judson, La Nafie, Yayu A., Nasution, Ichwan M., Orth, Robert J., Prathep, Anchana, Sanciangco, Jonnell C., van Tussenbroek, Brigitta, Vergara, Sheila G., Waycott, Michelle, and Zieman, Joseph C. (2011) Extinction risk assessment of the world's seagrass species. Biological Conservation, 144 (7). pp. 1961-1971.

Waycott, Michelle, Jones, Brendan L., Van Dijk, Jent Kornelis, Robson, Heather L.A., and Calladine, Ainsley (2011) Microsatellite markers in the Australian desert plant, Solanum centrale (Solanaceae). American Journal of Botany, 98 (4). e81-e83.

Bell, Johann D., Andrew, Neil L., Batty, Michael J., Chapman, Lindsay B., Dambacher, Jeffrey M., Dawson, Brian, Ganachaud, Alexandre S., Gehrke, Peter C., Hampton, John, Hobday, Alistair J., Hoegh-Guldberg, Ove, Johnson, Johanna E., Kinch, Jeff P., Le Borgne, Robert, Lehodey, Patrick, Lough, Janice M., Pickering, Timothy D., Pratchett, Morgan S., Vunisea, Aliti, and Waycott, Michelle (2011) Adapting tropical Pacific fisheries and aquaculture to climate change: management measures, policies and investments. In: Bell, Johann D., Johnson, Johanna E., and Hobday, Alistair J., (eds.) Vulnerability of Tropical Pacific Fisheries and Aquaculture to Climate Change. Secretariat of the Pacific Community, Noumea, New Caledonia, pp. 803-876.

Bricker, Eric, Waycott, Michelle, Calladine, Ainsley, and Zieman, Joseph C. (2011) High connectivity across environmental gradients and implications for phenotypic plasticity in a marine plant. Marine Ecology Progress Series, 423. pp. 57-67.

Sparks, Tim H., Butchart, Stuart H.M., Balmford, Andrew, Bennun, Leon, Stanwell-Smith, Damon, Walpole, Matt, Bates, Nicholas R., Bomhard, Bastian, Buchanan, Graeme M., Chenery, Anna M., Collen, Ben, Csirke, Jorge, Diaz, Robert J., Dulvy, Nicholas K., Fitzgerald, Claire, Kapos, Valerie, Mayaux, Philippe, Tierney, Megan, Waycott, Michelle, Wood, Louisa, and Green, Rhys E. (2011) Linked indicator sets for addressing biodiversity loss. Oryx, 45 (3). pp. 411-419.

Collier, Catherine J., Uthicke, Sven, and Waycott, Michelle (2011) Thermal tolerance of two seagrass species at contrasting light levels: Implications for future distribution in the Great Barrier Reef. Limnology and Oceanography, 56 (6). pp. 2200-2210.

Bell, Johann D., Johnson, Johanna E., Ganachaud, Alex S., Gehrke, Peter C., Hobday, Alistair J., Hoegh-Guldberg, Ove, Le Borgne, Robert, Lehodey, Patrick, Lough, Janice M., Pickering, Tim, Pratchett, Morgan S., and Waycott, Michelle (2011) Vulnerability of Tropical Pacific Fisheries and Aquaculture to Climate Change: summary for Pacific Island Countries and Territories. Secretariat of the Pacific Community, New Caledonia, Noumea.

Waycott, Michelle, McKenzie, Len, Mellors, Jane E., Ellison, Joanna C., Sheaves, Marcus T., Collier, Catherine, Schwarz, Anne-Maree, Webb, Arthur, Johnson, Johanna E., and Payri, Claude E. (2011) Vulnerability of mangroves, seagrasses and intertidal flats in the tropical Pacific to climate change. In: Bell, Johann D., Johnson, Johanna E., and Hobday, Alistair J., (eds.) Vulnerability of Tropical Pacific Fisheries and Aquaculture to Climate Change. Secretariat of the Pacific Community, Noumea, New Caledonia, pp. 297-368.

Jones, Brendan L., Waycott, Michelle, Robson, Heather L.A., Calladine, Ainsley, and Page, Tony (2010) Isolation and characterization of microsatellite loci in Santalum lanceolatum and Santalum leptocladum (Santalaceae). American Journal of Botany, 2010. e97-e98.

Bell, Johann, Batty, Mike, Ganachaud, Alex, Gehrke, Peter, Hobday, Alistair, Hoegh-Guldberg, Ove, Johnson, Johanna, Le Borgne, Robert, Lehodey, Patrick, Lough, Janice, Pickering, Tim, Pratchett, Morgan, Sheaves, Marcus, and Waycott, Michelle (2010) Preliminary assessment of the effects of climate change on fisheries and aquaculture in the Pacific. In: Gillett, Robert, (ed.) Fisheries in the Economies of the Pacific Island Countries and Territories. Pacific Studies Series . Asian Development Bank, Manila, Philippines, pp. 451-469.

Grech, Alana, Coles, Rob, Waycott, Michelle, Rasheed, Michael, and McKenzie, Len (2010) Risk Assessment for Coastal Seagrass Habitats of the Great Barrier Reef World Heritage Area: Outputs from the Risk Assessment Working Group. Report. Reef and Rainforest Research Centre, Cairns, QLD, Australia.

McMahon, K.M., and Waycott, M. (2009) New record for Halophila decipiens Ostenfeld in Kenya based on morphological and molecular evidence. Aquatic Botany, 91 (4). pp. 318-320.

Waycott, Michelle, Duarte, Carlos M., Carruthers, Tim J.B., Orth, Robert J., Dennison, William C., Olyarnik, Suzanne, Calladine, Ainsley, Fourqurean, James W., Heck Jr., Kenneth L., Hughes, A. Randall, Kendrick, Gary A., Kenworthy, W. Judson, Short, Frederick T, and Williams, Susan L. (2009) Accelerating loss of seagrasses across the globe threatens coastal ecosystems. Proceedings of the National Academy of Sciences, 106 (30). pp. 12377-12381.

Boyle, M.C., FitzSimmons, N.N., Limpus, C.J., Kelez, S., Velez-Zuazo, X., and Waycott, M. (2009) Evidence for transoceanic migrations by loggerhead sea turtles in the southern Pacific Ocean. Proceedings of the Royal Society of London Series B, Biological Sciences, 276 (1664). pp. 1993-1999.

Hughes, A. Randall, Williams, Susan L., Duarte, Carlos M., Heck Jr, Kenneth L., and Waycott, Michelle (2009) Associations of concern: declining seagrasses and threatened dependent species. Frontiers in Ecology and the Environment, 7 (5). pp. 242-246.

Collier, Catherine, and Waycott, Michelle (2009) Drivers of Change to Seagrass Distributions and Communities on the Great Barrier Reef: literature review and gaps analysis. Report. Reef and Rainforest Research Centre, Cairns, QLD, Australia.

Ryder, Maarten, Walsh, Fiona, Douglas, Josie, Waycott, Michelle, Robson, Heather, Singh, Zora, de Sousa Majer, Maria, Collins, Tim, White, Janelle, and Cheers, Brian (2009) Sustainable bush produce systems: progress report 2004–2006. Report. Desert Knowledge CRC, Alice Springs, NT, Australia.

Lukoschek, V., Waycott, M., and Keogh, J.S. (2008) Relative information content of polymorphic microsatellites and mitochondrial DNA for inferring dispersal and population genetic structure in the olive sea snake, Aipysurus laevis. Molecular Ecology, 17 (13). pp. 3062-3077.

Short, F., Carruthers, T., Dennison, W., and Waycott, M. (2007) Global seagrass distribution and diversity: a bioregional model. Journal of Experimental Marine Biology and Ecology, 350 (1-2). pp. 3-20.

Carruthers, T.J.B., Dennison, W.C., Kendrick, G.A., Waycott, M., Walker, D.I., and Cambridge, M.L. (2007) Seagrasses of south-west Australia: A conceptual synthesis of the world's most diverse and extensive seagrass meadows. Journal of Experimental Marine Biology and Ecology, 350 (1-2). pp. 21-45.

Fox, Samantha, Waycott, Michelle, and Dunshea, Glenn (2007) Isolation and characterisation of polymorphic microsatellite loci in the vulnerable spectacled flying fox, Pteropus conspicillatus. Conservation Genetics, 8 (4). pp. 1013-1016.

Lukoschek, V., Waycott, M., and Marsh, H. (2007) Phylogeography of the olive sea snake, Aipysurus laevis (Hydrophiinae) indicates Pleistocene range expansion around northern Australia but low contemporary gene flow. Molecular Ecology, 16 (16). pp. 3406-3422.

Chong, Caroline, Edwards, Will, and Waycott, Michelle (2007) Differences in resprouting ability are not related to seed size or seedling growth in four riparian woody species. Journal of Ecology, 95 (4). pp. 840-850.

Rowley, Jodi J.L., Hemingway, Valentine A., Alford, Ross A., Waycott, Michelle, Skerratt, Lee F., Campbell, Ruth, and Webb, Rebecca (2007) Experimental Infection and Repeat Survey Data Indicate the Amphibian Chytrid Batrachochytrium dendrobatidis May Not Occur on Freshwater Crustaceans in Northern Queensland, Australia. EcoHealth, 4 (1). pp. 31-36.

Van Dijk, Jent Kornelis, Waycott, Michelle, van Tussenbroek, Brigitta I., and Ouborg, Joop (2007) Polymorphic microsatellite markers for the Caribbean seagrass Thalassia testudinum Banks ex König. Molecular Ecology Notes, 7 (1). pp. 89-91.

Page, Tony, Tate, Hanington, Tungon, Joseph, Sam, Chanel, Dickinson, Geoff, Robson, Ken, Southwell, Ian, Russell, Mike, Waycott, Michelle, and Leakey, Roger (2007) Evaluation of heartwood and oil characters in nine populations of Santalum austrocaledonicum from Vanuatu. In: Proceedings of the Regional Workshop on Sandalwood Research, Development and Extension in the Pacific Islands and Asia. pp. 123-129. From: Regional Workshop on Sandalwood Research, Development and Extension in the Pacific Islands and Asia, 28 November - 01 December 2005, Nada, Fiji.

Sheaves, Marcus, Brodie, Jon, Brooke, Brendan, Dale, Pat, Lovelock, Catherine, Waycott, Michelle, Gehrke, Peter, Johnston, Ross, and Baker, Ronald (2007) Vulnerability of coastal and estuarine habitats in the GBR to climate change. In: Johnson, Johanna E., and Marshall, Paul A., (eds.) Climate Change and the Great Barrier Reef: a vulnerability assessment. Great Barrier Reef Marine Park Authority and the Australian Greenhouse Office, Townsville, QLD, Australia, pp. 593-620.

Waycott, Michelle, Collier, Catherine, McMahon, Kathryn, Ralph, Peter, McKenzie, Len, Udy, James, and Grech, Alana (2007) Vulnerability of seagrasses in the Great Barrier Reef to climate change. In: Johnson, Johanna E., and Marshall, Paul A., (eds.) Climate Change and the Great Barrier Reef: a vulnerability assessment. Great Barrier Reef Marine Park Authority and Australian Greenhouse Office, Townsville, QLD, Australia, pp. 193-236.

Orth, Robert J., Carruthers, Tim J.B., Short, Frederick T., Dennison, William C., Duarte, Carlos M., Fourqurean, James W., Heck Jr, Kenneth L., Hughes, A. Randall, Kendrick, Gary A., Kenworthy, W. Judson, Olyarnik, Suzanne, Waycott, Michelle, and Williams, Susan L. (2006) A global crisis for seagrass ecosystems. BioScience, 56 (12). pp. 987-996.

Blair, D., Waycott, M., Byrne, L., Dunshea, G., Smith-Keune, C., and Neil, K.M. (2006) Molecular discrimination of Perna (Mollusca: Bivalvia) species using the polymerase chain reaction and species-specific mitochondrial primers. Marine Biotechnology, 8 (4). pp. 380-385.

Williams, Yvette M., Williams, Stephen E., Alford, Ross A., Waycott, Michelle, and Johnson, Christopher N. (2006) Niche breadth and geographical range: ecological compensation for geographical rarity in rainforest frogs. Biology Letters, 2 (4). pp. 532-535.

Waycott, Michelle, Procaccini, Gabriele, Les, Donald H., and Reusch, Thorsten B.H. (2006) Seagrass evolution, ecology and conservation: a genetic perspective. In: Larkum, Anthony W.D., Orth, Robert J., and Duarte, Carlos M., (eds.) Seagrasses: biology, ecology and conservation. Springer, Dordrecht, The Netherlands, pp. 25-50.

Lukoschek, Vimoksalehi, Waycott, Michelle, and Dunshea, Glenn (2005) Isolation and characterization of microsatellite loci from the Australasian sea snake, Aipysurus laevis. Molecular Ecology Resources, 5 (4). pp. 879-881.

Shepherd, K. A., MacFarlane, T. D., and Waycott, M. (2005) Phylogenetic analysis of the Australian Salicornioideae (Chenopodiaceae) based on morphology and nuclear DNA. Australian Systematic Botany, 18 (1). pp. 89-115.

Waycott, Michelle, Longstaff, Ben J., and Mellors, Jane (2005) Seagrass population dynamics and water quality in the Great Barrier Reef region: a review and future research directions. Marine Pollution Bulletin, 51 (1-4). pp. 343-350.

Mellors, Jane, Waycott, Michelle, and Marsh, Helene (2005) Variation in biogeochemical parameters across intertidal seagrass meadows in the central Great Barrier Reef region. Marine Pollution Bulletin, 51 (1). pp. 335-342.

Gardiner, Christopher, Bielig, Leone, Schlink, Anthony, Coventry, Ross, and Waycott, Michelle (2004) Desmanthus a new pasture legume for the dry tropics. In: Proceedings of the 4th International Crop Science Congress . From: New directions for a diverse planet, 26 September - 1 October 2004, Brisbane, QLD, Australia.

Shepherd, K.A., Waycott, M., and Calladine, A. (2004) Radiation of the Australian Salicornioideae (Chenopodiaceae)—based on evidence from nuclear and chloroplast DNA sequences. American Journal of Botany, 91 (9). pp. 1387-1397.

Mellors, Jane, Marsh, Helene, Carruthers, Tim J.B., and Waycott, Michelle (2002) Testing the sediment-trapping paradigm of seagrass: do seagrasses influence nutrient status and sediment structure in tropical intertidal environments? Bulletin of Marine Science, 71 (3). pp. 1215-1226.

Bussell, John D., Waycott, Michelle, Chappill, Jennifer A., and James, Sidney H. (2002) Molecular phylogenetic analysis of the evolution of complex hybridity in Isotoma petraea. Evolution, 56 (6). pp. 1296-1302.

Waycott, M., and Barnes, P.A.G. (2001) AFLP diversity within and between populations of the Caribbean seagrass Thalassia testudinum (Hydrocharitaceae). Marine Biology, 139 (6). pp. 1021-1028.

Inglis, Graeme J., and Waycott, Michelle (2001) Methods for assessing seagrass seed ecology and population genetics. In: Short, F.T., and Coles, R.G., (eds.) Global Seagrass Research Methods. Elsevier Science, Amsterdam, The Netherlands, pp. 123-140.

Campey, M.L., Waycott, M., and Kendrick, G.A. (2000) Re-evaluatingspeciesboundaries among members of the Posidoniaostenfeldiispeciescomplex (Posidoniaceae): morphological and geneticvariation. Aquatic Botany, 66 (1). pp. 41-56.

Waycott, Michelle (2000) Genetic Factors in the Conservation of Seagrasses. Pacific Conservation Biology, 5 (4). pp. 269-276.