A

Alvarez Noriega, Mariana, Baird, Andrew H., Bridge, Tom C.L., Dornelas, Maria, Fontoura, Luisa, Pizarro, Oscar, Precoda, Kristin, Torres-Pulliza, Damaris, Woods, Rachael M., Zawada, Kyle, and Madin, Joshua S. (2018) Contrasting patterns of changes in abundance following a bleaching event between juvenile and adult scleractinian corals. Coral Reefs, 37 (2). pp. 527-532.

B

Barnett, Adam, Fitzpatrick, Richard, Bradley, Michael, Miller, Ingo, Sheaves, Marcus, Chin, Andrew, Smith, Bethany, Diedrich, Amy, Yick, Jonah, Lubitz, Nicolas, Crook, Kevin, Mattone, Carlo, Bennett, Mike B., Wojtach, Leah, and Abrantes, Katya (2022) Scientific response to a cluster of shark bites. People and Nature, 4 (4). pp. 963-982.

C

Cartwright, Paula, Iles, Jordan, Mattone, Carlo, O'Callaghan, Mark, and Waltham, Nathan (2022) Turbidity (NTU) to Suspended Sediment Concentration (SSC) Conversion Protocol. Report. TropWATER, Townsville, QLD, Australia.

D

Dibattista, Joseph D., Alfaro, Michael E., Sorenson, Laurie, Choat, John H., Hobbs, Jean-Paul A., Sinclair-Taylor, Tane H., Rocha, Luiz A., Chang, Jonathan, Luiz, Osmar J., Cowman, Peter F., Friedman, Matt, and Berumen, Michael L. (2018) Ice ages and butterflyfishes: phylogenomics elucidates the ecological and evolutionary history of reef fishes in an endemism hotspot. Ecology and Evolution, 8 (22). pp. 10989-11008.

DiBattista, Joseph D., Roberts, May B., Bouwmeester, Jessica, Bowen, Brian W., Coker, Darren J., Lozano-Cortés, Diego F., Choat, J. Howard, Gaither, Michelle R., Hobbs, Jean-Paul A., Khalil, Maha T., Kochzius, Marc, Myers, Robert F., Paulay, Gustav, Robitzch, Vanessa S.N., Saenz-Agudelo, Pablo, Salas, Eva, Sinclair-Taylor, Tane H., Toonen, Robert J., Westneat, Mark W., Williams, Suzanne T., and Berumen, Michael L. (2016) A review of contemporary patterns of endemism for shallow water reef fauna in the Red Sea. Journal of Biogeography, 43 (3). pp. 423-439.

F

Fisher, Eric E., Choat, John H., McCormick, Mark I., and Cappo, Mike (2018) Relative influence of environmental factors on the timing and occurrence of multi-species coral reef fish aggregations. PLoS ONE, 13 (12). e0209234.

G

Guppy, Jarrod L., Jones, Dave B., Jerry, Dean R., Wade, Nicholas M., Raadsma, Herman W., Huerlimann, Roger, and Zenger, Kyall R. (2018) The state of "omics" research for farmed penaeids: advances in research and impediments to industry utilization. Frontiers in Genetics, 9. 282.

Guerra-Castro, E., Cruz-Motta, J.J., and Conde, J.E. (2011) Quantitative analisys of fouling diversity associated with roots of Rhizophora mangle L. in La Restinga Lagoon National Park. Interciencia, 36 (12). pp. 923-930.

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H

Harrison, Hugo B., Álvarez-Noriega, Mariana, Baird, Andrew H., Heron, Scott F., Macdonald, Chancey, and Hughes, Terry P. (2019) Back-to-back coral bleaching events on isolated atolls in the Coral Sea. Coral Reefs, 38 (4). pp. 713-719.

Hall, A. E., Vitale, L., and Kingsford, M. J. (2019) Planktonic larval duration, early growth, and the influence of dietary input on the otolith microstructure of Scolopsis bilineatus (Nemipteridae). Environmental Biology of Fishes, 102 (4). pp. 541-552.

Hughes, Terry P., Kerry, James T., Álvarez-Noriega, Mariana, Alvarez-Romero, Jorge G., Anderson, Kristen D., Baird, Andrew, Babcock, Russell C., Beger, Maria, Bellwood, David, Berkelmans, Ray, Bridge, Tom C., Butler, Ian R., Byrne, Maria, Cantin, Neal E., Comeau, Steeve, Connolly, Sean, Cumming, Graeme S., Dalton, Steven J., Diaz-Pulido, Guillermo, Eakin, C. Mark, Figueira, Will F., Gilmour, James P., Harrison, Hugo B., Heron, Scott F., Hoey, Andrew S., Hobbs, Jean-Paul A., Hoogenboom, Mia O., Kennedy, Emma V., Kuo, Chao-Yang, Lough, Janice M., Lowe, Ryan J., Liu, Gang, McCulloch, Malcolm T., Malcolm, Hamish A., McWilliam, Michael J., Pandolfi, John M., Pears, Rachel J., Pratchett, Morgan S., Schoepf, Verena, Simpson, Tristan, Skirving, William J., Sommer, Brigitte, Torda, Gergely, Wachenfeld, David R., Willis, Bette L., and Wilson, Shaun (2017) Global warming and recurrent mass bleaching of corals. Nature, 543 (7645). pp. 373-377.

Hamilton, Richard J., Almany, Glenn R., Brown, Christopher J., Pita, John, Peterson, Nathan A., and Choat, J. Howard (2017) Logging degrades nursery habitat for an iconic coral reef fish. Biological Conservation, 210 (Part A). pp. 273-280.

Hall, April E., and Clark, Timothy D. (2016) Seeing is believing: metabolism provides insight into threat perception for a prey species of coral reef fish. Animal Behaviour, 115. pp. 117-126.

K

Kok, Judith E., Graham, Nicholas A. J., and Hoogenboom, Mia O. (2016) Climate-driven coral reorganisation influences aggressive behaviour in juvenile coral-reef fishes. Coral Reefs, 35 (2). pp. 473-483.

Kosnik, Mathew A., Jablonski, David, Lockwood, Rowan, and Novakck-Gottshall, Philip M. (2006) Quantifying Molluscan body size in evolutionary and ecological analyses: maximizing the return on data-collection efforts. Palaios, 21 (6). pp. 588-597.

L

Lee, A.C., and Arango, C.P. (2003) Two new species and other records of sea spiders (Pycnogonida: Arthropoda) from tropical North Queensland. Memoirs of the Queensland Museum, 49 (1). pp. 343-348.

M

Ma, Ka Yan, van Herwerden, Lynne, Newman, Stephen J., Berumen, Michael L., Choat, John Howard, Chu, Ka Hou, and de Mitcheson, Yvonne Sadovy (2018) Contrasting population genetic structure in three aggregating groupers (Percoidei: Epinephelidae) in the Indo-West Pacific: the importance of reproductive mode. BMC Evolutionary Biology, 18. 180.

Madin, Joshua, Alroy, John, Aberhan, Martin, Fursich, Franz, Kiessling, Wolfgang, Kosnik, Mathew, and Wagner, Peter (2006) Statistical independence of escalatory ecological trends in Phanerozoic marine invertebrates. Science, 312 (5775). pp. 897-900.

N

Nams, Vilis O. (2011) Emergent properties of patch shapes affect edge permeability to animals. PLoS ONE, 6 (7). e21886. pp. 1-8.

P

Pearse, Alan R., Hamilton, Richard J., Choat, John Howard, Pita, John, Almany, Glenn, Peterson, Nate, Hamilton, Grant S., and Peterson, Erin E. (2018) Giant coral reef fishes display markedly different susceptibility to night spearfishing. Ecology and Evolution, 8 (20). pp. 10247-10256.

S

Sheaves, M., Mattone, C., Barnett, A., Abrantes, K., Bradley, M., Sheaves, A., Sheaves, J., and Waltham, N.J. (2024) Whale sharks as oceanic nurseries for Golden Trevally. Pacific Conservation Biology, 30 (1). PC23004.

Sheaves, M., Waltham, N.J., Benham, C., Bradley, M., Mattone, C., Diedrich, A., Sheaves, J., Sheaves, A., Hernandez, S., Dale, P., Banhalmi-Zakar, Z., and Newlands, M. (2021) Restoration of marine ecosystems: understanding possible futures for optimal outcomes. Science of the Total Environment, 796. 148845.

Schiel, David R., Ayling, Tony, Kingsford, Michael J., Battershill, Christopher N., Choat, J. Howard, Andrew, Neil L., Clements, Kendall D., Ayling, Avril L., Leum, Linda L., Poynter, Mark, and Jones, Geoffrey P. (2018) Change in the rocky reef fish fauna of the iconic Poor Knights Islands Marine Reserve in north-eastern New Zealand over 4 decades. Marine and Freshwater Research, 69 (10). pp. 1496-1507.

Sinclair-Taylor, Tane H., Berumen, Michael L., Priest, Mark A., Choat, J. Howard, McIlwain, Jennifer H., Rocha, Luiz A., Bowen, Brian W., Piatek, Marek J., Saenz-Agudelo, Pablo, DiBattista, Joseph D., Gaither, Michelle R., and Hobbs, Jean-Paul A. (2017) Comparative phylogeography of reef fishes from the Gulf of Aden to the Arabian Sea reveals two cryptic lineages. Coral Reefs, 36 (2). pp. 625-638.

Steicke, C., Jegatheesan, V., and Zeng, C. (2009) Performance of a recirculating tank-based system utilizing floating and submerged filters with a denitrification column for the culture of barramundi (Lates calcarifer). In: Proceedings of the Fourth International Symposium on Southeast Asian Water Environment (4) pp. 253-260. From: Fourth International Symposium on Southeast Asian Water Environment, 6-8 December 2006, Bangkok, Thailand.

T

Taylor, Brett M., Brandl, Simon J., Kapur, Maia, Robbins, William D., Johnson, Garrett, Huveneers, Charlie, Renaud, Phil, and Choat, John Howard (2018) Bottom-up processes mediated by social systems drive demographic traits of coral-reef fishes. Ecology, 99 (3). pp. 642-651.

Taylor, Brett M., Hamilton, Richard J., Almany, Glenn R., and Choat, J. Howard (2018) The world's largest parrotfish has slow growth and a complex reproductive ecology. Coral Reefs, 37 (4). pp. 1197-1208.

Á

Álvarez Noriega, Mariana, Baird, Andrew H., Dornelas, Maria, Madin, Joshua, and Connolly, Sean R. (2018) Negligible effect of competition on coral colony growth. Ecology, 99 (6). pp. 1347-1356.

Álvarez-Noriega, Mariana, Baird, Andrew H., Dornelas, Maria, Madin, Joshua S., Cumbo, Vivian R., and Connolly, Sean R. (2016) Fecundity and the demographic strategies of coral morphologies. Ecology, 97 (12). pp. 3485-3493.

Álvarez Noriega, Mariana (2019) Competition and coexistence of reef-corals. PhD thesis, James Cook University.