Nordberg, Eric J., Caley, M. Julian, and Schwarzkopf, Lin (2021) Designing solar farms for synergistic commercial and conservation outcomes. Solar Energy, 228. pp. 586-593.

Bridge, Tom C. L., Huang, Zhi, Przeslawski, Rachel, Tran, Maggie, Siwabessy, Justy, Picard, Kim, Reside, April E., Logan, Murray, Nichol, Scott L., and Caley, M. Julian (2020) Transferable, predictive models of benthic communities informs marine spatial planning in a remote and data-poor region. Conservation Science and Practice, 2 (9). e251.

Wu, Paul Pao-Yen, Mengersen, Kerrie, Caley, M. Julian, McMahon, Kathryn, Rasheed, Michael A., and Kendrick, Gary A. (2019) Analysing the dynamics and relative influence of variables affecting ecosystem responses using functional PCA and boosted regression trees: a seagrass case study. Methods in Ecology and Evolution, 10 (10). pp. 1723-1733.

Roberts, T. Edward, Bridge, Tom C.L., Caley, M. Julian, Madin, Joshua S., and Baird, Andrew H. (2019) Resolving the depth zonation paradox in reef-building corals. Ecology, 100 (8). e02761.

Roberts, T. Edward, Keith, Sally A., Rahbek, Carsten, Bridge, Tom C.L., Caley, M. Julian, and Baird, Andrew H. (2019) Testing biodiversity theory using species richness of reef-building corals across a depth gradient. Biology Letters, 15 (10).

Wu, Paul Pao-Yen, McMahon, Kathryn, Rasheed, Michael A., Kendrick, Gary A., York, Paul H., Chartrand, Kathryn, Caley, M. Julian, and Mengersen, Kerrie (2018) Managing seagrass resilience under cumulative dredging affecting light: predicting risk using dynamic Bayesian networks. Journal of Applied Ecology, 55 (3). pp. 1339-1350.

Wu, Paul Pao-Yen, Mengersen, Kerrie, McMahon, Kathryn, Kendrick, Gary A., Chartrand, Katie, York, Paul H., Rasheed, Michael A., and Caley, M. Julian (2017) Timing anthropogenic stressors to mitigate their impact on marine ecosystem resilience. Nature Communications, 8. 1263.

Fraser, Matthew, Short, Jessie, Kendrick, Gary, McLean, Dianne, Keesing, John, Byrne, Maria, Caley, M. Julian, Clarke, Doug, Davis, Andrew R., Erftemeijer, Paul L.A., Field, Stewart, Gustin-Craig, Sam, Huisman, John, Keough, Mick, Lavery, Paul S., Masini, Ray, McMahon, Kathryn, Mengersen, Kerrie, Rasheed, Michael, Statton, John, Stoddart, Jim, and Wu, Paul (2017) Effects of dredging on critical ecological processes for marine invertebrates, seagrasses and macroalgae, and the potential for management with environmental windows using Western Australia as a case study. Ecological Indicators, 78. pp. 229-242.

Chen, Carla C.M., Bourne, David G., Drovandi, Christopher C., Mengersen, Kerrie, Willis, Bette L., Caley, M. Julian, and Sato, Yui (2017) Modelling environmental drivers of black band disease outbreaks in populations of foliose corals in the genus Montipora. PeerJ, 5. e3438.

Mellin, C., Lurgi, M., Matthews, S., MacNeil, M.A., Caley, M.J., Bax, N., Przeslawski, R., and Fordham, D.A. (2016) Forecasting marine invasions under climate change: biotic interactions and demographic processes matter. Biological Conservation, 204 (Part B). pp. 459-467.

Mellin, C., Mouillot, D., Kulbicki, M., McClanahan, T.R., Vigliola, L., Bradshaw, C.J.A., Brainard, R.E., Chabanet, P., Edgar, G.J., Fordham, D.A., Friedlander, A.M., Parravicini, V., Sequeira, A.M.M., Stuart-Smith, R.D., Wantiez, L., and Caley, M.J. (2016) Humans and seasonal climate variability threaten large-bodied coral reef fish with small ranges. Nature Communications, 7. 10491. pp. 1-9.

Hays, Graeme C., Ferreira, Luciana C., Sequeira, Ana M.M., Meekan, Mark G., Duarte, Carlos M., Bailey, Helen, Bailleul, Fred, Bowen, W. Don, Caley, M. Julian, Costa, Daniel P., Eguíluz, Victor M., Fossette, Sabrina, Friedlaender, Ari S., Gales, Nick, Gleiss, Adrian C., Gunn, John, Harcourt, Robert, Hazen, Elliott L., Heithaus, Michael R., Heupel, Michelle, Holland, Kim, Horning, Markus, Jonsen, Ian, Kooyman, Gerald L., Lowe, Christopher G., Madsen, Peter T., Marsh, Helene, Phillips, Richard A., Righton, David, Ropert-Coudert, Yan, Sato, Katsufumi, Shaffer, Scott A., Simpfendorfer, Colin A., Sims, David W., Skomal, Gregory, Takahashi, Akinori, Trathan, Philip N., Wikelski, Martin, Womble, Jamie N., and Thums, Michele (2016) Key Questions in marine megafauna movement ecology. Trends in Ecology & Evolution, 31 (6). pp. 463-475.

Schwarzkopf, Lin, Caley, Michael Julian, and Kearney, Michael R. (2016) One lump or two? Explaining a major latitudinal transition in reproductive allocation in a viviparous lizard. Functional Ecology, 30. pp. 1373-1383.

Roberts, T. Edward, Bridge, Thomas C., Caley, M. Julian, and Baird, Andrew H. (2016) The point count transect method for estimates of biodiversity on coral reefs: improving the sampling of rare species. PLoS One, 11 (3). e0152335. pp. 1-10.

Przeslawski, Rachel, Alvarez, Belinda, Kool, Johnathan, Bridge, Tom, Caley, M. Julian, and Nichol, Scott (2015) Implications of sponge biodiversity patterns for the management of a marine reserve in Northern Australia. PLoS ONE, 10. e014181. pp. 1-20.

Connolly, Sean R., Macneil, M. Aaron, Caley, M. Julian, Knowlton, Nancy, Cripps, Ed, Hisano, Mizue, Thibaut, Loïc M., Bhattacharya, Bhaskar D., Benedetti-Cechi, Lisandro, Brainard, Russell E., Brandt, Angelika, Bulleri, Fabio, Ellingsen, Kari E., Kaiser, Stefanie, Kröncke, Ingrid, Linse, Katrin, Maggi, Elena, O'Hara, Timothy D., Plaisance, Laetititia, Poore, Gary C.B., Sarkar, Santosh K., Satpathy, Kamala, Schückel, Ulrike, Williams, Alan, and Wilson, Robin S. (2014) Commonness and rarity in the marine biosphere. Proceedings of the National Academy of Sciences of the United States of America, 111 (23). pp. 8524-8529.

Devney, Carol A., Caley, M. Julian, and Congdon, Bradley C. (2010) Plasticity of noddy parents and offspring to sea-surface temperature anomalies. PLoS ONE, 5 (7). e11891. pp. 1-10.

Souter, P., Willis, B.L., Bay, L.K., Caley, M.J., Muirhead, A., and van Oppen, M.J.H. (2010) Location and disturbance affect population genetic structure in four coral species of the genus Acropora on the Great Barrier Reef. Marine Ecology Progress Series, 416. pp. 35-45.

Kassahn, Karin S., Crozier, Ross H., Pörtner, Hans O., and Caley, M. Julian (2009) Animal performance and stress: responses and tolerance limits at different levels of biological organisation. Biological Reviews, 84 (2). pp. 277-292.

Bay, Line K., Caley, M. Julian, and Crozier, Ross H. (2008) Meta-population structure in a coral reef fish demonstrated by genetic data on patterns of migration, extinction and re-colonisation. BMC Evolutionary Biology, 8. .

Kassahn, Karin S., Crozier, Ross H., Ward, Alister C., Stone, Glenn, and Caley, M. Julian (2007) From transcriptome to biological function: environmental stress in an ectothermic vertebrate, the coral reef fish Pomacentrus moluccensis. BMC Genomics, 8 (358). pp. 1-16.

Kassahn, Karin S., Caley, M. Julian, Ward, Alister C., Connolly, Ashley R., Stone, Glenn, and Crozier, Ross H. (2007) Heterologous microarray experiments used to identify the early gene response to heat stress in a coral reef fish. Molecular Ecology, 16 (8). pp. 1749-1763.

Bay, L.K., Crozier, R.H., and Caley, M.J. (2006) The relationship between population genetic structure and pelagic larval duration in coral reef fishes on the Great Barrier Reef. Marine Biology, 149 (5). pp. 1247-1256.

Bay, L.K., Buechler, K., Gagliano, M., and Caley, M.J. (2006) Intraspecific variation in the pelagic larval duration of tropical reef fishes. Journal of Fish Biology, 68 (4). pp. 1206-1214.

Game, Edward T., and Caley, M. Julian (2006) The stability of P in coral reef fishes. Evolution: international journal of organic evolution, 60 (4). pp. 814-823.

Caley, MJ, and Schwarzkopf, Lin (2004) Complex growth rate evolution in a latitudinally widespread species. Evolution: international journal of organic evolution, 58 (4). pp. 862-869.

Caley, M. Julian, and Munday, Philip L. (2003) Growth trades off with habitat specialization. Proceedings of the Royal Society of London Series B, Biological Sciences, 270 (52). pp. 175-177.

Schubert, Melissa, Munday, Philip L., Caley, M. Julian, Jones, Geoffrey P., and Llewellyn, Lyndon E. (2003) The toxicity of skin secretions from coral-dwelling gobies and their potential role as a predator deterrent. Environmental Biology of Fishes, 67 (2). pp. 359-367.

van Herwerden, Lynne, Caley, M. Julian, and Blair, David (2003) Regulatory motifs are present in the ITS1 of some flatworm species. Journal of Experimental Zoology Part B: molecular and developmental evolution, 296 (1). pp. 80-86.

Caley, M. Julian, and Schluter, Dolph (2003) Predators favour mimicry in a tropical reef fish. Proceedings of the Royal Society of London Series B, Biological Sciences, 270 (1516). pp. 667-672.

Munday, P.L., Schubert, M., Baggio, J.A., Jones, G.P., Caley, M.J., and Grutter, A.S. (2003) Skin toxins and external parasitism of coral-dwelling gobies. Journal of Fish Biology, 62 (4). pp. 976-981.

Bean, Kyi, Jones, Geoffrey P., and Caley, M. Julian (2002) Relationships among distribution, abundance and microhabitat specialisation in a guild of coral reef triggerfish (family Balistidae). Marine Ecology - Progress Series, 233. pp. 263-272.

Jones, Geoffrey P., Caley, M. Julian, and Munday, Philip L. (2002) Rarity in coral reef fish communities. In: Sale, Peter F., (ed.) Coral Reef Fishes: dynamics and diversity in a complex ecosystem. Elsevier, San Diego, CA, USA, pp. 81-101.

Caley, M. Julian, Schwarzkopf, Lin, and Shine, Richard (2001) Does total reproductive effort evolve independently of offspring size? Evolution: international journal of organic evolution, 55 (6). pp. 1245-1248.

Munday, Philip L., Jones, Geoffrey P., and Caley, M. Julian (2001) Interspecific competition and coexistence in a guild of coral-dwelling fishes. Ecology, 82 (8). pp. 2177-2189.

Caley, M. Julian, Buckley, Kathryn A., and Jones, Geoffrey P. (2001) Separating ecological effects of habitat fragmentation, degradation, and loss on coral commensals. Ecology, 82 (12). pp. 3435-3448.

Hughes, T.P., Cornell, H.V., Caley, M.J., Karlson, R.H., Wallace, C.C., and Wolstenholme, J. (2000) Local and regional patterns in the community structure of corals. In: Abstracts of the Ninth International Coral Reef Symposium. p. 5. From: 9th International Coral Reef Symposium: World Coral Reefs in the New Millenium, 23-27 October 2000, Bali, Indonesia.

Schwarzkopf, Lin, Blows, Mark W., and Caley, M. Julian (1999) Life-history consequences of divergent selection on egg size in Drosophila melanogaster. American Naturalist, 154 (3). pp. 333-340.

Shine, R., Schwarzkopf, L., and Caley, M.J. (1996) Energy, risk, and reptilian reproductive effort: a reply to Niewiarowski and Dunham. Evolution, 50 (5). pp. 2111-2114.

Caley, M.J., Carr, M.H., Hixon, M.A., Hughes, T.P., Jones, G.P., and Menge, B.A. (1996) Recruitment and the local dynamics of open marine populations. Annual Review of Ecology and Systematics, 27. pp. 477-500.