Nayfa, Maria G., Jones, Dave B., Benzie, John A.H., Jerry, Dean R., and Zenger, Kyall R. (2020) Comparing genomic signatures of selection between the Abbassa Strain and eight wild populations of Nile tilapia (Oreochromis niloticus) in Egypt. Frontiers in Genetics, 11. 567969.

Nayfa, Maria G., Jones, David B., Lind, Curtis E., Benzie, John A.H., Jerry, Dean R., and Zenger, Kyall R. (2020) Pipette and paper: combining molecular and genealogical methods to assess a Nile tilapia (Oreochromis niloticus) breeding program. Aquaculture, 523. 735171.

Benzie, J.A.H., and Smith-Keune, C. (2006) Microsatellite variation in Australian and Indonesian pearl oyster Pinctada maxima populations. Marine Ecology Progress Series, 314. pp. 197-211.

Nevalainen, Timo J., Peuravuori, Heikki J., Quinn, Ronald J., Llewellyn, Lyndon E., Benzie, John A.H., Fenner, Peter J., and Winkel, Ken D. (2004) Phospholipase A2 in Cnidaria. Comparative Biochemistry and Physiology-Part B: biochemistry & molecular biology, 139 (4). pp. 731-735.

Uthicke, S., Welch, D., and Benzie, J.A.H. (2004) Slow growth and lack of recovery in overfished holothurians on the Great Barrier Reef: evidence from DNA fingerprints and repeated large-scale surveys. Conservation Biology, 18 (5). pp. 1395-1404.

Benzie, John A.H., Smith, Carolyn, and Sugama, Ketut (2003) Mitochondrial DNA reveals genetic differentiation between Australian and Indonesian pearl oyster Pinctada maxima (Jameson 1901) populations. Journal of Shellfish Research, 22 (3). pp. 781-787.

van Herwerden, L., Benzie, J., and Davies, Campbell (2003) Microsatellite variation and population genetic structure of the red throat emperor on the Great Barrier Reef. Journal of Fish Biology, 62 (5). pp. 987-999.

Smith, C., Benzie, J.A.H, and Wilson, K.J. (2003) Isolation and characterization of eight microsatellite loci from silver-lipped pearl oyster Pinctada maxima. Molecular Ecology Notes, 3 (1). pp. 125-127.

Bastidas, C., Benzie, J.A.H., and Fabricius, K.E. (2002) Genetic differentiation among populations of the brooding soft coral Clavularia koellikeri on the Great Barrier Reef. Coral Reefs, 21 (3). pp. 233-241.

Van Herwerden, Lynne, Benzie, John, Peplow, Lesa, and Davies, Campbell (2001) Microsatellite markers for coral trout (Plectropomus laevis) and red throat emperor (Lethrinus miniatus) and their utility in other species of reef fish. Molecular Ecology, 9 (11). pp. 1929-1931.

Bastidas, C., Benzie, J.A.H., Uthicke, S., and Fabricius, K. (2001) Genetic differentiation among populations of a broadcast spawning soft coral, Sinularia flexibilis, on the Great Barrier Reef. Marine Biology, 138 (3). pp. 517-525.

Brooker, Amanda, Benzie, J.A.H., Blair, D., and Versini, J.-J. (2000) Population structure of the giant tiger prawn Penaeus monodon in Australian waters, determined using microsatellite markers. Marine Biology, 136 (1). pp. 149-157.

Williams, S.T., and Benzie, J.A.H. (1998) Evidence of a biogeographic break between populations of a high dispersal starfish: congruent regions within the Indo-West Pacific defined by color morphs, mtDNA, and allozyme data. Evolution, 52 (1). pp. 87-99.

Stobart, B., and Benzie, J.A.H. (1994) Allozyme electrophoresis demonstrates that the scleractinian coral Montipora digitata is two species. Marine Biology, 118 (2). pp. 183-190.