Legge, Sarah, Woinarski, John C.Z., Scheele, Ben C., Garnett, Stephen T., Lintermans, Mark, Nimmo, Dale G., Whiterod, Nick S., Southwell, Darren M., Ehmke, Glenn, Buchan, Anne, Gray, Jenny, Metcalfe, Dan J., Page, Manda, Rumpff, Libby, van Leeuwen, Stephen, Williams, Dick, Ahyong, Shane T., Chapple, David G., Cowan, Mitch, Hossain, Md Anwar, Kennard, Mark, Macdonald, Stewart, Moore, Harry, Marsh, Jessica, McCormack, Robert B., Michael, Damian, Mitchell, Nicola, Newell, David, Raadik, Tarmo A., and Tingley, Reid (2022) Rapid assessment of the biodiversity impacts of the 2019–2020 Australian megafires to guide urgent management intervention and recovery and lessons for other regions. Diversity and Distributions, 28. pp. 571-591.

Macdonald, Stewart L., Bradford, Matthew, McKeown, Adam, Vanderduys, Eric, Hoskins, Andrew, Westcott, David, and UNSPECIFIED (2021) Camp site habitat preferences of the little red flying-fox (Pteropus scapulatus) in Queensland. Australian Journal of Zoology, 68 (6). pp. 234-253.

Ward, Michelle, Tulloch, Ayesha I. T., Radford, James Q., Williams, Brooke A., Reside, April E., Macdonald, Stewart L., Mayfield, Helen J., Maron, Martine, Possingham, Hugh P., Vine, Samantha J., O’Connor, James L., Massingham, Emily J., Greenville, Aaron C., Woinarski, John C. Z., Garnett, Stephen T., Lintermans, Mark, Scheele, Ben C., Carwardine, Josie, Nimmo, Dale G., Lindenmayer, David B., Kooyman, Robert M., Simmonds, Jeremy S., Sonter, Laura J., and Watson, James E. M. (2020) Impact of 2019–2020 mega-fires on Australian fauna habitat. Nature Ecology & Evolution, 4. pp. 1321-1326.

Tingley, Reid, Macdonald, Stewart, Mitchell, Nicola J., Woinarski, John C. Z., Meiri, Shai, Bowles, Phil, Cox, Neil A., Shea, Glenn M., Bohm, Monika, Chanson, Janice, Tognelli, Marcelo, Harris, Jaclyn, Walke, Claire, Harrison, Natasha, Victor, Savannah, Woods, Calum, Amey, Andrew P., Bamford, Mike, Catt, Gareth, Clemann, Nick, Couper, Patrick, Cogger, Hal, Cowan, Mark, Craig, Michael D., Dickman, Chris R., Doughty, Paul, Ellis, Ryan, Fenner, Aaron, Ford, Stewart, Gaikhorst, Glen, Gillespie, Graeme, Greenlees, Matthew J., Hobson, Rod, Hoskin, Conrad J., How, Ric, Hutchinson, Michael N., Lloyd, Ray, McDonald, Peter, Melville, Jane, Michael, Damian R., Moritz, Craig, Oliver, Paul M., Peterson, Garry, Robertson, Peter, Sanderson, Chris, Somaweera, Ruchira, Teale, Roy, Valentine, Leonie, Vanderduys, Eric, Venz, Melanie, Wapstra, Erik, Wilson, Steve, and Chapple, David (2019) Geographic and taxonomic patterns of extinction risk in Australian squamates. Biological Conservation, 238. 108203.

Nordberg, Eric J., Macdonald, Stewart, Zimny, Gina, Hoskins, Andrew, Zimny, Anders, Somaweera, Ruchira, Ferguson, Janine, and Perry, Justin (2019) An evaluation of nest predator impacts and the efficacy of plastic meshing on marine turtle nests on the western Cape York Peninsula, Australia. Biological Conservation, 238. 108201.

Llewelyn, John, Macdonald, Stewart L., Moritz, Craig, Martins, Felipe, Hatcher, Amberlee, and Phillips, Ben L. (2018) Adjusting to climate: acclimation, adaptation and developmental plasticity in physiological traits of a tropical rainforest lizard. Integrative Zoology, 13 (4). pp. 411-427.

Macdonald, Stewart L., Llewelyn, John, and Phillips, Ben L. (2018) Using connectivity to identify climatic drivers of local adaptation. Ecology Letters, 21. pp. 207-216.

Scheffers, Brett R., Edwards, David P., Macdonald, Stewart L., Senior, Rebecca A., Andriamahohatra, Lydou R., Roslan, Nadiah, Rogers, Andrew M., Haugaasen, Torbjørn, and Wright, Patricia (2017) Extreme thermal heterogeneity in structurally complex tropical rain forests. Biotropica, 49 (1). pp. 35-44.

Macdonald, Stewart L., Llewelyn, John, Moritz, Craig, and Phillips, Ben L. (2017) Peripheral isolates as sources of adaptive diversity under climate change. Frontiers in Ecology and Evolution, 5. 88.

Llewelyn, John, Macdonald, Stewart, Hatcher, Amberlee, Moritz, Craig, and Phillips, Ben L. (2017) Thermoregulatory behaviour explains countergradient variation in the upper thermal limit of a rainforest skink. Oikos, 126 (5). pp. 748-757.

Scheffers, Brett R., Shoo, Luke, Phillips, Ben, Macdonald, Stewart L., Anderson, Alex, VanDerWal, Jeremy, Storlie, Collin, Gourret, Arnaud, and Williams, Stephen E. (2017) Vertical (arboreality) and horizontal (dispersal) movement increase the resilience of vertebrates to climatic instability. Global Ecology and Biogeography, 26 (7). pp. 787-798.

Phillips, Ben L., Muñoz, Martha M., Hatcher, Amberlee, Macdonald, Stewart L., Llewelyn, John, Lucy, Vanessa, and Moritz, Craig (2016) Heat hardening in a tropical lizard: geographic variation explained by the predictability and variance in environmental temperatures. Functional Ecology, 30 (7). pp. 1161-1168.

Llewelyn, John, Macdonald, Stewart L., Hatcher, Amberlee, Moritz, Craig, and Phillips, Ben L. (2016) Intraspecific variation in climate-relevant traits in a tropical rainforest lizard. Diversity and Distributions, 22 (10). pp. 1000-1012.

Macdonald, Stewart (2016) Locating adaptive diversity in the face of climate change. PhD thesis, James Cook University.

Hoskin, Conrad, Grigg, Gordon, Stewart, David, and Macdonald, Stewart (2015) Frogs of Australia (1.0) [Mobile application software]. Ug Media, Townsville, QLD, Australia.

Reside, April E., Ceccarelli, Daniela M., Isaac, Joanne L., Hilbert, David W., Moran, Cath, Llewelyn, John, Macdonald, Stewart, Hoskin, Conrad J., Pert, Petina, and Parsons, Jennifer (2014) Biodiversity: adaptation pathways and opportunities. In: Moran, Catherine, Turton, Stephen M., and Hill, Rosemary, (eds.) Adaptation Pathways and Opportunities for the Wet Tropics NRM Cluster Region: volume 1: introduction, biodiversity and ecosystem services. James Cook University, Cairns, QLD, Australia, pp. 11-74.

Phillips, B.L., Llewelyn, J., Hatcher, A., Macdonald, S., and Moritz, C. (2014) Do evolutionary constraints on thermal performance manifest at different organizational scales? Journal of Evolutionary Biology, 27 (12). pp. 2687-2694.

Delfino, Massimo, Scheyer, Torsten M., Chesi, Francesco, Fletcher, Tamara, Gemel, Richard, Macdonald, Stewart, Rabi, Márton, and Salisbury, Steven W. (2013) Gross morphology and microstructure of type locality ossicles of Psephophorus polygonus Meyer, 1847 (Testudines, Dermochelyidae). Geological Magazine, 150 (5). pp. 767-782.

Macdonald, Stewart L., Borsboom, Adrian C., Best, Russell, and Hoskin, Conrad J. (2013) Significant range extensions for Delma labialis and a review of its biology. Australian Zoologist, 36 (4). pp. 470-477.

Zozaya, Stephen M., Scheffers, Brett R., Hoskin, Conrad J., Macdonald, Stewart L., and Williams, Stephen E. (2013) A significant range extension for the Australian Wet Tropics skink Eulamprus frerei (Reptilia: Squamata: Scincidae). Memoirs of the Queensland Museum - Nature, 56 (2). pp. 621-624.

Brown, Danny, Worthington Wilmer, Jessica , and Macdonald, Stewart (2012) A revision of Strophurus taenicauda (Squamata; Diplodactylidae) with the description of two new subspecies from central Queensland and a southerly range extension. Zootaxa, 3243. pp. 1-28.