Whitman, T.N., Hoogenboom, M.O., Negri, A.P., and Randall, C.J. (2024) Coral-seeding devices with fish-exclusion features reduce mortality on the Great Barrier Reef. Scientific Reports, 14. 13332.

Briggs, Nico D., Page, Cathie A., Giuliano, Christine, Alessi, Cinzia, Hoogenboom, Mia, Bay, Line K., and Randall, Carly J. (2024) Dissecting coral recovery: bleaching reduces reproductive output in Acropora millepora. Coral Reefs, 43. pp. 557-569.

Cumming, Graeme S., Adamska, Maja, Barnes, Michele L., Barnett, Jon, Bellwood, David R., Cinner, Joshua E., Cohen, Philippa J., Donelson, Jennifer M., Fabricius, Katharina, Grafton, R. Quentin, Grech, Alana, Gurney, Georgina G., Hoegh-Guldberg, Ove, Hoey, Andrew S., Hoogenboom, Mia O., Lau, Jacqueline, Lovelock, Catherine E., Lowe, Ryan, Miller, David J., Morrison, Tiffany H., Mumby, Peter J., Nakata, Martin, Pandolfi, John M., Peterson, Garry D., Pratchett, Morgan S., Ravasi, Timothy, Riginos, Cynthia, Rummer, Jodie L., Schaffelke, Britta, Wernberg, Thomas, and Wilson, Shaun K. (2023) Research priorities for the sustainability of coral-rich western Pacific seascapes. Regional Environmental Change, 23 (2). 66.

Brunner, Christopher A., Ricardo, Gerard F., Uthicke, Sven, Negri, Andrew P., and Hoogenboom, Mia O. (2022) Effects of climate change and light limitation on coral recruits. Marine Ecology Progress Series, 690. pp. 65-82.

Noonan, Sam H.C., DiPerna, Stephanie, Hoogenboom, Mia O., and Fabricius, Katharina E. (2022) Effects of variable daily light integrals and elevated CO2 on the adult and juvenile performance of two Acropora corals. Marine Biology, 169. 10.

McWilliam, Mike, Madin, Joshua S., Chase, Tory J., Hoogenboom, Mia O., and Bridge, Tom C.L. (2022) Intraspecific variation reshapes coral assemblages under elevated temperature and acidity. Ecology Letters, 25 (11). pp. 2513-2524.

Hill, Tessa S., and Hoogenboom, Mia O. (2022) The indirect effects of ocean acidification on corals and coral communities. Coral Reefs, 41. pp. 1557-1583.

Comeau, Steeve, Cornwall, Christopher E., Shlesinger, Tom, Hoogenboom, Mia, Mana, Ralph, McCulloch, Malcolm T., and Rodolfo-metalpa, Riccardo (2022) pH variability at volcanic CO2 seeps regulates coral calcifying fluid chemistry. Global Change Biology, 28 (8). pp. 2751-2763.

Brunner, Christopher, Uthicke, Sven, Ricardo, Gerard F., Hoogenboom, Mia O., and Negri, Andrew P. (2021) Climate change doubles sedimentation-induced coral recruit mortality. Science of the Total Environment, 768. 143897.

Bairos-Novak, Kevin R., Hoogenboom, Mia O., van Oppen, Madeleine J., and Connolly, Sean (2021) Coral adaptation to climate change: meta-analysis reveals high heritability across multiple traits. Global Change Biology, 27 (22). pp. 5694-5710.

Berry, K.L.E., Hess, S., Clark, T.D., Wenger, A.S., Hoogenboom, M.O., and Negri, A.P. (2021) Effects of suspended coal particles on gill structure and oxygen consumption rates in a coral reef fish. Marine Pollution Bulletin, 169. 112459.

Jurriaans, Saskia, Hoogenboom, Mia O., and Ferrier-Pages, Christine (2021) Similar thermal breadth of two temperate coral species from the Mediterranean Sea and two tropical coral species from the Great Barrier Reef. Coral Reefs, 40 (4). pp. 1281-1295.

Chase, T. J., Pratchett, M. S., and Hoogenboom, M. O. (2020) Behavioral trade-offs and habitat associations of coral-dwelling damselfishes (family Pomacentridae). Marine Ecology Progress Series, 633. pp. 141-156.

Chase, T. J., Pratchett, M. S., McWilliam, M. J., Hein, M. Y., Tebbett, S. B., and Hoogenboom, M. O. (2020) Damselfishes alleviate the impacts of sediments on host corals. Royal Society Open Science, 7. 192074.

McWilliam, Mike, Pratchett, Morgan S., Hoogenboom, Mia O., and Hughes, Terry P. (2020) Deficits in functional trait diversity following recovery on coral reefs. Proceedings of the Royal Society of London Series B, Biological Sciences, 287. 20192628.

Ramsby, Blake D., Heishman, Joshua, Hoogenboom, Mia O., Whalan, Steve, and Webster, Nicole S. (2020) Dissolved inorganic nutrient enrichment does not affect sponge growth or condition. Marine Ecology - Progress Series, 634. pp. 77-88.

Wolfe, Kennedy, Anthony, Ken, Babcock, Russell C., Bay, Line, Bourne, David G., Burrows, Damien, Byrne, Maria, Deaker, Dione, Diaz-Pulido, Guillermo, Frade, Pedro, Gonzalez-Rivero, Manuel, Hoey, Andrew, Hoogenboom, Mia, McCormick, Mark, Ortiz, Juan Carlos, Razak, Tries, Richardson, Anthony J., Roff, George, Sheppard-Brennand, Hannah, Stella, Jessica, Thompson, Angus, Watson, Sue-Ann, Webster, Nicole, Audas, Donna, Beeden, Roger, Carver, Jesseca, Cowlishaw, Mel, Dyer, Michelle, Groves, Paul, Horne, Dylan, Thiault, Lauric, Vains, Jason, Wachenfeld, David, Weekers, Damien, Williams, Genevieve, and Mumby, Peter J. (2020) Priority species to support the functional integrity of coral reefs. Oceanography and Marine Biology: an annual review, 58. pp. 179-318.

Jurriaans, Saskia, and Hoogenboom, Mia O. (2020) Seasonal acclimation of thermal performance in two species of reef-building corals. Marine Ecology Progress Series, 635. pp. 55-70.

Torres-Pulliza, Damaris, Dornelas, Maria A., Pizarro, Oscar, Bewley, Michael, Blowes, Shane A., Boutros, Nader, Brambilla, Viviana, Chase, Tory J., Frank, Grace, Friedman, Ariell, Hoogenboom, Mia O., Williams, Stefan, Zawada, Kyle J. A., and Madin, Joshua S. (2020) A geometric basis for surface habitat complexity and biodiversity. Nature Ecology & Evolution, 4. pp. 1495-1501.

Pratchett, Morgan, Bridge, Thomas, Brodie, Jon, Cameron, Darren, Day, Jonathan, Emslie, Mike, Grech, Alana, Hamann, Mark, Heron, Scott, Hoey, Andrew, Hoogenboom, Mia, Lough, Janice, Morrison, Tiffany, Osborne, Kate, Read, Mark, Schauble, Chloe, Smithers, Scott, Sweatman, Hugh, and Waterhouse, Jane (2019) Australia's Great Barrier Reef. In: Sheppard, Charles, (ed.) World Seas: an environmental evaluation. Elsevier, London, UK, pp. 333-362.

Chase, Tory J., and Hoogenboom, Mia O. (2019) Differential occupation of available coral hosts by coral-dwelling damselfish (Pomacentridae) on Australia's Great Barrier Reef. Diversity, 11 (11). 219.

Hughes, Terry P., Kerry, James T., Connolly, Sean R., Baird, Andrew H., Eakin, C. Mark, Heron, Scott F., Hoey, Andrew S., Hoogenboom, Mia O., Jacobson, Mizue, Liu, Gang, Pratchett, Morgan S., Skirving, William, and Torda, Gergely (2019) Ecological memory modifies the cumulative impact of recurrent climate extremes. Nature Climate Change, 9 (1). pp. 40-44.

Hughes, Terry P., Kerry, James T., Baird, Andrew H., Connolly, Sean R., Chase, Tory J., Dietzel, Andreas, Hill, Tessa, Hoey, Andrew S., Hoogenboom, Mia O., Jacobson, Mizue, Kerswell, Ailsa, Madin, Joshua S., Mieog, Abbie, Paley, Allison S., Pratchett, Morgan S., Torda, Gergely, and Woods, Rachael M. (2019) Global warming impairs stock-recruitment dynamics of corals. Nature, 568 (7752). pp. 387-401.

Reichert, Jessica, Arnold, Angelina L., Hoogenboom, Mia O., Schubert, Patrick, and Wilke, Thomas (2019) Impacts of microplastics on growth and health of hermatypic corals are species-specific. Environmental Pollution, 254 (B). 113074.

Bauer-Civiello, Anne, Critchell, Kay, Hoogenboom, Mia, and Hamann, Mark (2019) Input of plastic debris in an urban tropical river system. Marine Pollution Bulletin, 144. pp. 235-242.

Jaspers, Cornelia, Fraune, Sebastian, Arnold, A. Elizabeth, Miller, David J., Bosch, Thomas C.G., Voolstra, Christian R., Adamska, Maja, Ainsworth, Tracy, Ball, Eldon, Boote, Chlöe, Bourne, David, Butterfield, Nicholas J., Chan, Cheong Xin, Cooke, Ira, Cowman, Peter F., Darling, Aaron, Davy, Simon K., Mohamed, Amin, Fabricius, Katharina, Valero Fortunato, Sofia V., Hernandez Agreda, Alejandra, Hoogenboom, Mia, Moya, Aurelie, Pita, Lucia, Ragan, Mark A., Robbins, Steven J., Andrade Rodriguez, Natalia R., Sakamaki, Kazuhiro, Schoepf, Verena, Seemann, Thorsten, Shinzato, Chuya, Stolarski, Jarosław, Strugnell, Jan, Takahashi, Shunichi, Tang, Sen-Lin, Webster, Nicole N, Whitelaw, Brooke, and Ying, Hua (2019) Resolving structure and function of metaorganisms through a holistic framework combining reductionist and integrative approaches. Zoology, 133. pp. 81-87.

Jurriaans, S., and Hoogenboom, M.O. (2019) Thermal performance of scleractinian corals along a latitudinal gradient on the Great Barrier Reef. Philosophical Transactions of the Royal Society B: Biological Sciences, 374 (1778). 20180546.

Nicolet, K.J., Hoogenboom, M.O., Pratchett, M.S., and Willis, B.L. (2018) Selective feeding by corallivorous fishes neither promotes nor reduces progression rates of black band disease. Marine Ecology Progress Series, 594. pp. 95-106.

Nicolet, K.J., Chong-Seng, K.M., Pratchett, M.S., Willis, B.L., and Hoogenboom, M.O. (2018) Predation scars may influence host susceptibility to pathogens: evaluating the role of corallivores as vectors of coral disease. Scientific Reports, 8. 5258.

Dornelas, Maria, Antão, Laura H., Moyes, Faye, Bates, Amanda E., Magurran, Anne E., Adam, Dušan, Akhmetzhanova, Asem A., Appeltans, Ward, Arcos, José Manuel, Arnold, Haley, Ayyappan, Narayanan, Badihi, Gal, Baird, Andrew, Barbosa, Miguel, Barreto, Tiago Egydio, Bässler, Claus, Bellgrove, Alecia, Belmaker, Jonathan, Benedetti-Cecchi, Lisandro, Bett, Brian J., Bjorkman, Anne D., Błażewicz, Magdalena, Blowes, Shane A., Bloch, Christopher P., Bonebrake, Timothy C., Boyd, Susan, Bradford, Matt, Brooks, Andrew J., Brown, James H., Bruelheide, Helge, Budy, Phaedra, Carvalho, Fernando, Castañeda-Moya, Edward, Chen, Chaolun Allen, Chamblee, John F., Chase, Tory, Siegwart Collier, Laura, Collinge, Sharon K., Condit, Richard, Cooper, Elisabeth J., Cornelissen, J. Hans C., Cotano, Unai, Kyle Crow, Shannan, Damasceno, Gabriella, Davies, Claire H., Davis, Robert A., Day, Frank P., Degraer, Steven, Doherty, Tim S., Dunn, Timothy E., Durigan, Giselda, Duffy, J. Emmett, Edelist, Dor, Edgar, Graham J., Elahi, Robin, Elmendorf, Sarah C., Enemar, Anders, Ernest, S. K. Morgan, Escribano, Rubén, Estiarte, Marc, Evans, Brian S., Fan, Tung-Yung, Turini Farah, Fabiano, Loureiro Fernandes, Luiz, Farneda, Fábio Z., Fidelis, Alessandra, Fitt, Robert, Fosaa, Anna Maria, Daher Correa Franco, Geraldo Antonio, Frank, Grace, Fraser, William R., García, Hernando, Cazzolla Gatti, Roberto, Givan, Or, Gorgone-Barbosa, Elizabeth, Gould, William A., Gries, Corinna, Grossman, Gary D., Gutierréz, Julio R., Hale, Stephen, Harmon, Mark E., Harte, John, Haskins, Gary, Henshaw, Donald L., Hermanutz, Luise, Hidalgo, Pamela, Higuchi, Pedro, Hoey, Andrew, Van Hoey, Gert, Hofgaard, Annika, Holeck, Kristen, Hollister, Robert D., Holmes, Richard, Hoogenboom, Mia, Hsieh, Chih-hao, Hubbell, Stephen P., Huettmann, Falk, Huffard, Christine L., Hurlbert, Allen H., Macedo Ivanauskas, Natália, Janík, David, Jandt, Ute, Jażdżewska, Anna, Johannessen, Tore, Johnstone, Jill, Jones, Julia, Jones, Faith A. M., Kang, Jungwon, Kartawijaya, Tasrif, Keeley, Erin C., Kelt, Douglas A., Kinnear, Rebecca, Klanderud, Kari, Knutsen, Halvor, Koenig, Christopher C., Kortz, Alessandra R., Král, Kamil, Kuhnz, Linda A., Kuo, Chao-Yang, Kushner, David J., Laguionie-Marchais, Claire, Lancaster, Lesley T., Min Lee, Cheol, Lefcheck, Jonathan S., Lévesque, Esther, Lightfoot, David, Lloret, Francisco, Lloyd, John D., López-Baucells, Adrià, Louzao, Maite, Madin, Joshua S., Magnússon, Borgþór, Malamud, Shahar, Matthews, Iain, McFarland, Kent P., McGill, Brian, McKnight, Diane, McLarney, William O., Meador, Jason, Meserve, Peter L., Metcalfe, Daniel J., Meyer, Christoph F. J., Michelsen, Anders, Milchakova, Nataliya, Moens, Tom, Moland, Even, Moore, Jon, Mathias Moreira, Carolina, Müller, Jörg, Murphy, Grace, Myers-Smith, Isla H., Myster, Randall W., Naumov, Andrew, Neat, Francis, Nelson, James A., Paul Nelson, Michael, Newton, Stephen F., Norden, Natalia, Oliver, Jeffrey C., Olsen, Esben M., Onipchenko, Vladimir G., Pabis, Krzysztof, Pabst, Robert J., Paquette, Alain, Pardede, Sinta, Paterson, David M., Pélissier, Raphaël, Peñuelas, Josep, Pérez-Matus, Alejandro, Pizarro, Oscar, Pomati, Francesco, Post, Eric, Prins, Herbert H. T., Priscu, John C., Provoost, Pieter, Prudic, Kathleen L., Pulliainen, Erkki, Ramesh, B. R., Mendivil Ramos, Olivia, Rassweiler, Andrew, Rebelo, Jose Eduardo, Reed, Daniel C., Reich, Peter B., Remillard, Suzanne M., Richardson, Anthony J., Richardson, J. Paul, van Rijn, Itai, Rocha, Ricardo, Rivera-Monroy, Victor H., Rixen, Christian, Robinson, Kevin P., Ribeiro Rodrigues, Ricardo, de Cerqueira Rossa-Feres, Denise, Rudstam, Lars, Ruhl, Henry, Ruz, Catalina S., Sampaio, Erica M., Rybicki, Nancy, Rypel, Andrew, Sal, Sofia, Salgado, Beatriz, Santos, Flavio A. M., Savassi-Coutinho, Ana Paula, Scanga, Sara, Schmidt, Jochen, Schooley, Robert, Setiawan, Fakhrizal, Shao, Kwang-Tsao, Shaver, Gaius R., Sherman, Sally, Sherry, Thomas W., Siciński, Jacek, Sievers, Caya, da Silva, Ana Carolina, Rodrigues da Silva, Fernando, Silveira, Fabio L., Slingsby, Jasper, Smart, Tracey, Snell, Sara J., Soudzilovskaia, Nadejda A., Souza, Gabriel B. G., Maluf Souza, Flaviana, Castro Souza, Vinícius, Stallings, Christopher D., Stanforth, Rowan, Stanley, Emily H., Mauro Sterza, José, Stevens, Maarten, Stuart-Smith, Rick, Rondon Suarez, Yzel, Supp, Sarah, Yoshio Tamashiro, Jorge, Tarigan, Sukmaraharja, Thiede, Gary P., Thorn, Simon, Tolvanen, Anne, Teresa Zugliani Toniato, Maria, Totland, Ørjan, Twilley, Robert R., Vaitkus, Gediminas, Valdivia, Nelson, Vallejo, Martha Isabel, Valone, Thomas J., Van Colen, Carl, Vanaverbeke, Jan, Venturoli, Fabio, Verheye, Hans M., Vianna, Marcelo, Vieira, Rui P., Vrška, Tomáš, Quang Vu, Con, Van Vu, Lien, Waide, Robert B., Waldock, Conor, Watts, Dave, Webb, Sara, Wesołowski, Tomasz, White, Ethan P., Widdicombe, Claire E., Wilgers, Dustin, Williams, Richard, Williams, Stefan B., Williamson, Mark, Willig, Michael R., Willis, Trevor J., Wipf, Sonja, Woods, Kerry D., Woehler, Eric J., Zawada, Kyle, and Zettler, Michael L. (2018) BioTIME: a database of biodiversity time series for the Anthropocene. Global Ecology and Biogeography, 27. pp. 760-786.

McWilliam, Mike, Hoogenboom, Mia O., Baird, Andrew H., Kuo, Chao-Yang, Madin, Joshua S., and Hughes, Terry P. (2018) Biogeographical disparity in the functional diversity and redundancy of corals. Proceedings of the National Academy of Sciences of the United States of America, 115 (12). pp. 3084-3089.

Chase, T.J., Pratchett, M.S., Frank, G.E., and Hoogenboom, M.O. (2018) Coral-dwelling fish moderate bleaching susceptibility of coral hosts. PLoS One, 13 (12). e0208545.

Critchell, Kay, and Hoogenboom, Mia O. (2018) Effects of microplastic exposure on the body condition and behaviour of planktivorous reef fish (Acanthochromis polyacanthus). PLoS ONE, 13 (3). e0193308.

DiPerna, Stephanie, Hoogenboom, Mia, Noonan, Sam, and Fabricius, Katharina (2018) Effects of variability in daily light integrals on the photophysiology of the corals Pachyseris speciosa and Acropora millepora. PLoS ONE, 13 (9). e0203882.

Ramsby, Blake D., Hoogenboom, Mia O., Whalan, Steve, and Webster, Nicole S. (2018) Elevated seawater temperature disrupts the microbiome of an ecologically important bioeroding sponge. Molecular Ecology, 27 (8). pp. 2124-2137.

Hughes, Terry P., Kerry, James T., Baird, Andrew H., Connolly, Sean R., Dietzel, Andreas, Eakin, C. Mark, Heron, Scott F., Hoey, Andrew S., Hoogenboom, Mia O., Liu, Gang, McWilliam, Michael J., Pears, Rachel J., Pratchett, Morgan S., Skirving, William J., Stella, Jessica S., and Torda, Gergely (2018) Global warming transforms coral reef assemblages. Nature, 556 (7702). pp. 492-496.

McWilliam, Mike, Chase, Tory J., and Hoogenboom, Mia O. (2018) Neighbor diversity regulates the productivity of coral assemblages. Current Biology, 28 (22). pp. 3634-3639.

Hughes, Terry P., Anderson, Kristen D., Connolly, Sean R., Heron, Scott F., Kerry, James T., Lough, Janice M., Baird, Andrew H., Baum, Julia, Berumen, Michael L., Bridge, Tom C., Claar, Danielle C., Eakin, C. Mark, Gilmour, James P., Graham, Nicholas A.J., Harrison, Hugo, Hobbs, Jean-Paul A., Hoey, Andrew S., Hoogenboom, Mia, Lowe, Ryan J., McCulloch, Malcolm T., Pandolfi, John M., Pratchett, Morgan, Schoepf, Verena, Torda, Gergely, and Wilson, Shaun K. (2018) Spatial and temporal patterns of mass bleaching of corals in the Anthropocene. Science, 359 (6371). pp. 80-83.

Ramsby, Blake D., Hoogenboom, Mia O., Smith, Hillary A., Whalan, Steve, and Webster, Nicole S. (2018) The bioeroding sponge Cliona orientalis will not tolerate future projected ocean warming. Scientific Reports, 8. 8302.

Hoogenboom, Mia, Frank, Grace E., Chase, Tory J., Jurriaans, Saskia, Álvarez-Noriega, Mariana, Peterson, Katie, Critchell, Kay, Berry, Kathryn L.E., Nicolet, Katia J., Ramsby, Blake, and Paley S., Allison (2017) Environmental drivers of variation in bleaching severity of Acropora species during an extreme thermal anomaly. Frontiers in Marine Science, 4. 376.

Baird, Andrew H., Hoogenboom, Mia O., and Huang, Danwei (2017) Cyphastrea salae, a new species of hard coral from Lord Howe Island, Australia (Scleractinia, Merulinidae). ZooKeys, 662. pp. 49-66.

Hughes, Terry P., Kerry, James T., Álvarez-Noriega, Mariana, Alvarez-Romero, Jorge G., Anderson, Kristen D., Baird, Andrew, Babcock, Russell C., Beger, Maria, Bellwood, David, Berkelmans, Ray, Bridge, Tom C., Butler, Ian R., Byrne, Maria, Cantin, Neal E., Comeau, Steeve, Connolly, Sean, Cumming, Graeme S., Dalton, Steven J., Diaz-Pulido, Guillermo, Eakin, C. Mark, Figueira, Will F., Gilmour, James P., Harrison, Hugo B., Heron, Scott F., Hoey, Andrew S., Hobbs, Jean-Paul A., Hoogenboom, Mia O., Kennedy, Emma V., Kuo, Chao-Yang, Lough, Janice M., Lowe, Ryan J., Liu, Gang, McCulloch, Malcolm T., Malcolm, Hamish A., McWilliam, Michael J., Pandolfi, John M., Pears, Rachel J., Pratchett, Morgan S., Schoepf, Verena, Simpson, Tristan, Skirving, William J., Sommer, Brigitte, Torda, Gergely, Wachenfeld, David R., Willis, Bette L., and Wilson, Shaun (2017) Global warming and recurrent mass bleaching of corals. Nature, 543 (7645). pp. 373-377.

Burgess, Scott C., Ryan, Will H., Blackstone, Neil W., Edmunds, Peter J., Hoogenboom, Mia O., Levitan, Don R., and Wulff, Janie L. (2017) Metabolic scaling in modular animals. Invertebrate Biology, 136 (4). pp. 456-472.

Horwitz, Rael, Hoogenboom, Mia, and Fine, Maoz (2017) Spatial competition dynamics between reef corals under ocean acidification. Scientific Reports, 7. 40288.

Ramsby, Blake D., Hoogenboom, Mia O., Whalan, Steve, Webster, Nicole S., and Thompson, Angus (2017) A decadal analysis of bioeroding sponge cover on the inshore Great Barrier Reef. Scientific Reports, 7. 2706.

Casey, Jordan M., Baird, Andrew H., Brandl, Simon J., Hoogenboom, Mia O., Rizzari, Justin R., Frisch, Ashley J., Mirbach, Christopher E., and Connolly, Sean R. (2017) A test of trophic cascade theory: fish and benthic assembalges across a predator density gradient on coral reefs. Oecologia, 183 (1). pp. 161-175.

Berry, Kathryn L.E., Hoogenboom, Mia O., Brinkman, Diane L., Burns, Kathryn A., and Negri, Andrew P. (2016) Effects of coal contamination on early life history processes of a reef-building coral, Acropora tenuis. Marine Pollution Bulletin, 114 (1). pp. 505-514.

Kok, Judith E., Graham, Nicholas A. J., and Hoogenboom, Mia O. (2016) Climate-driven coral reorganisation influences aggressive behaviour in juvenile coral-reef fishes. Coral Reefs, 35 (2). pp. 473-483.

Madin, Joshua S., Hoogenboom, Mia O., Connolly, Sean R., Darling, Emily S., Falster, Daniel S., Huang, Danwei, Keith, Sally A., Mizerek, Toni, Pandolfi, John M., Putnam, Hollie M., and Baird, Andrew H. (2016) A trait-based approach to advance coral reef science. Trends in Ecology & Evolution, 31 (6). pp. 419-428.

Tremblay, Pascal, Gori, Andrea, Maguer, Jean François, Hoogenboom, Mia, and Ferrier-Pagès, Christine (2016) Heterotrophy promotes the re-establishment of photosynthate translocation in a symbiotic coral after heat stress. Scientific Reports, 6. 38112. pp. 1-14.

Berry, Kathryn L.E., Hoogenboom, Mia O., Flores, Florita, and Negri, Andrew P. (2016) Simulated coal spill causes mortality and growth inhibition in tropical marine organisms. Scientific Reports, 6. 25894. pp. 1-8.

Arrigoni, Roberto, Benzoni, Francesca, Huang, Danwei, Fukami, Hironobu, Chen, Chaolun Allen, Berumen, Michael L., Hoogenboom, Mia, Thompson, Damian, Hoeksema, Bert W., Budd, Ann F., Zayasu, Yuna, Terraneo, Tullia I., Kitano, Yuki F., and Baird, Andrew H. (2016) When forms meet genes: revision of the scleractinian genera Micromussa and Homophyllia (Lobophylliidae) with a description of two new species and one new genus. Contributions to Zoology, 85 (4). pp. 387-422.

Madin, Joshua S., Anderson, Kristen D., Andreasen, Magnus Heide, Bridge, Tom C.L., Cairns, Stephen d., Connolly, Sean R., Darling, Emily S., Diaz, Marcela, Falster, Daniel S., Franklin, Erik C., Gates, Ruth, Hoogenboom, Mia O., Huang, Danwei, Keith, Sally A., Kosnik, Matthew A., Kuo, Chao-Yang, Lough, Janice M., Lovelock, Catherine E., Luiz, Osmar, Martinelli, Julieta, Mizerek, Toni, Pandolfi, John M., Pochon, Xavier, Pratchett, Morgan S., Putnam, Hollie M., Roberts, T. Edward, Stat, Michael, Wallace, Carden C., Widman, Elizabeth, and Baird, Andrew H. (2016) The coral trait database: a curated database of trait information for coral species from the global oceans. Scientific Data, 3. 160017. pp. 1-21.

Hall, N.M., Berry, K.L.E., Rintoul, L., and Hoogenboom, M.O. (2015) Microplastic ingestion by scleractinian corals. Marine Biology, 162 (3). pp. 725-732.

Hoogenboom, Mia, Rottier, Cécile, Sikorski, Severine, and Ferrier-Pagés, Christine (2015) Among-species variation in the energy budgets of reef-building corals: scaling from coral polyps to communities. Journal of Experimental Biology, 218 (24). pp. 3866-3877.

Brien, H.V., Watson, S.-A., and Hoogenboom, M.O. (2015) Presence of competitors influences photosynthesis, but not growth, of the hard coral Porites cylindrica at elevated seawater CO2. ICES Journal of Marine Science, 73 (3). pp. 659-669.

Pratchett, Morgan S., Anderson, Kristen D., Hoogenboom, Mia O., Windman, Elizabeth, Baird, Andrew H., Pandolfi, John M., Edmunds, Peter J., and Lough, Janice M. (2015) Spatial, temporal and taxonomic variation in coral growth: implications for the structure and function of coral reef ecosystems. Oceanography and Marine Biology, 53. pp. 215-295.

Rodolfo-Metalpa, Riccardo, Hoogenboom, Mia O., Rottier , Cécile, Ramos-Esplá, Alfonso, Baker, Andrew C., Fine, Maoz, and Ferrier-Pagès, Christine (2014) Thermally tolerant corals have limited capacity to acclimatize to future warming. Global Change Biology, 20 (10). pp. 3036-3049.

Langlois, Lucas A., and Hoogenboom, Mia O. (2014) Capacity for short-term physiological acclimation to light does not control the lower depth distributions of branching corals. Marine Ecology Progress Series, 508. pp. 149-162.

Tremblay, P., Grover, R., Maguer, J.F., Hoogenboom, M., and Ferrier-Pagès, C. (2014) Carbon translocation from symbiont to host depends on irradiance and food availability in the tropical coral Stylophora pistillata. Coral Reefs, 33 (1). pp. 1-13.

Chase, T.J., Pratchett, M.S., Walker, S.P.W., and Hoogenboom, M.O. (2014) Small-scale environmental variation influences whether coral-dwelling fish promote or impede coral growth. Oecologia, 176 (4). pp. 1009-1022.

Jeans, Jennifer, Campbell, Douglas A., and Hoogenboom, Mia O. (2013) Increased reliance upon photosystem II repair following acclimation to high-light by coral-dinoflagellate symbioses. Photosynthesis Research, 118 (3). pp. 219-229.

Burton, Tim, Hoogenboom, Mia, Beevers, N.D., Armstrong, J.D., and Metcalfe, N.B. (2013) Among-sibling differences in the phenotypes of juvenile fish depend on their location within the egg mass and maternal dominance rank. Proceedings of the Royal Society of London Series B, Biological Sciences, 280 (1751). pp. 1-7.

Nicolet, K.J., Hoogenboom, M.O., Gardiner, N.M., Pratchett, M.S., and Willis, B.L. (2013) The corallivorous invertebrate Drupella aids in transmission of brown band disease on the Great Barrier Reef. Coral Reefs, 32 (2). pp. 585-595.

Hoogenboom, Mia O., Armstrong, John D., Groothuis, Ton G.G., and Metcalfe, Neil B. (2013) The growth benefits of aggressive behavior vary with individual metabolism and resource predictability. Behavioral Ecology, 24 (1). pp. 253-261.

Flores, Florita, Hoogenboom, Mia O., Smith, Luke D., Cooper, Timothy F., Abrego, David, and Negri, Andrew P. (2012) Chronic exposure of corals to fine sediments: lethal and sub-lethal impacts. PLoS ONE, 7 (5). e37795. pp. 1-12.

Hoogenboom, Mia O., Campbell, Douglas A., Beraud, Eric, DeZeeuw, Katrina, and Ferrier-Pages, Christine (2012) Effects of light, food availability and temperature stress on the function of Photosystem II and Photosystem I of coral symbionts. PLoS ONE, 7 (1). e30167. pp. 1-14.

Madin, Joshua S., Hoogenboom, Mia O., and Connolly, Sean R. (2012) Integrating physiological and biomechanical drivers of population growth over environmental gradients on coral reefs. The Journal of Experimental Biology, 215 (6). pp. 968-976.

Hoogenboom, Mia O., Metcalfe, Neil B., Groothuis, Ton G.G., de Vries, Bonnie, and Costantini, David (2012) Relationship between oxidative stress and circulating testosterone and cortisol in pre-spawning female brown trout. Comparative Biochemistry and Physiology A - Molecular and Integrative Physiology, 163 (3-4). pp. 379-387.

Hoogenboom, M.O., Connolly, S.R., and Anthony, K.R.N. (2011) Biotic and abiotic correlates of tissue quality for common scleractinian corals. Marine Ecology Progress Series, 438. pp. 119-128.

Burton, Tim, Hoogenboom, Mia, Armstrong, John D., Groothuis, Ton G. G., and Metcalfe, Neil B. (2011) Egg hormones in a highly fecund vertebrate: do they influence offspring social structure in competitive conditions? Functional Ecology, 25 (6). pp. 1379-1388.

Bannister, Raymond, Hoogenboom, Mia, Anthony, Kenneth R. N., Battershill, Chris, Whalan, Stephen, Webster, Nicole, and De Nys, Rocky (2011) Incongruence between the distribution of a common coral reef sponge and photosynthesis. Marine Ecology Progress Series, 423. pp. 95-100.

Hoogenboom, Mia, Armstrong, John D., Miles, Mike S., Burton, Tim, Groothuis, Ton G. G., and Metcalfe, Neil B. (2011) Implantation of cocoa butter reduces egg and hatchling size in Salmo trutta. Journal of Fish Biology, 79 (3). pp. 587-596.

Negri, Andrew P., and Hoogenboom, Mia O. (2011) Water contamination reduces the tolerance of coral larvae to thermal stress. PLoS ONE, 6 (5). pp. 19703-19712.

Ferrier-Pagès, Christine, Hoogenboom, Mia, and Houlbrèque, Fanny (2011) The role of plankton in coral trophodynamics. In: Dubinsky, Zvy, and Stambler, Noga, (eds.) Coral Reefs: an ecosystem in transition. Springer, Dordrecht, The Netherlands, pp. 215-229.

Hoogenboom, Mia, Rodolfo-Metalpa, Riccardo, and Ferrier-Pagès, Christine (2010) Co-variation between autotrophy and heterotrophy in the Mediterranean coral Cladocora caespitosa. Journal of Experimental Biology, 213 (14). pp. 2399-2409.

Hoogenboom, M., Beraud, E., and Ferrier-Pagès, C. (2010) Relationship between symbiont density and photosynthetic carbon acquisition in the temperate coral Cladocora caespitosa. Coral Reefs, 29 (1). pp. 21-29.

Hoogenboom, Mia O., Connolly, Sean R., and Anthony, Kenneth R.N. (2009) Effects of photoacclimation on the light niche of corals: a process-based approach. Marine Biology, 156 (12). pp. 2493-2503.

Anthony, Kenneth R.N., Hoogenboom, Mia O., Maynard, Jeffrey A., Grottoli, Andréa G., and Middlebrook, Rachael (2009) Energetics approach to predicting mortality risk from environmental stress: a case study of coral bleaching. Functional Ecology, 23 (3). pp. 539-550.

Hoogenboom, Mia O., and Connolly, Sean R. (2009) Defining fundamental niche dimensions of corals: synergistic effects of colony size, light, and flow. Ecology, 90 (3). pp. 767-780.

Hoogenboom, Mia O., Connolly, Sean R., and Anthony, Kenneth R.N. (2008) Interactions between morphological and physiological plasticity optimize energy acquisition in corals. Ecology, 89 (4). pp. 1144-1154.

Hoogenboom, Mia O. (2008) Physiological models of performance for scleractinian corals. PhD thesis, James Cook University.

Hoogenboom, Mia O., Anthony, Kenneth R.N., and Connolly, Sean R. (2006) Energetic cost of photoinhibition in corals. Marine Ecology Progress Series, 313. pp. 1-12.

Anthony, K.R.N., Hoogenboom, M. O., and Connolly, S.R. (2005) Adaptive variation in coral geometry and the optimization of internal colony light climates. Functional Ecology, 19 (1). pp. 17-26.