Cleary, Daniel F.R., Pólonia, Ana R.M., Renema, Willem, Hoeksema, Bert W., Wolstenholme, Jackie, Tuti, Yosephine, and de Voogd, Nicole J. (2014) Coral reefs next to a major conurbation: a study of temporal change (1985−2011) in coral cover and composition in the reefs of Jakarta, Indonesia. Marine Ecology Progress Series, 501. pp. 89-98.

Cleary, Daniel FR, De Vantier, Lyndon, Giyanto, , Vail, Lyle, Manto, Philip, de Voogd, Nicole J, Rachello-Dolmen, Paola G, Tuti, Yosephine, Budiyanto, Agus, Wolstenholme, Jackie, Hoeksema, Bert W, and Suharsono, (2008) Relating variation in species composition to environmental variables: a multi-taxon study in an Indonesian coral reef complex. Aquatic Sciences, 70 (4). pp. 419-431.