Gijsbers, J.C., Englebert, N., Prata, K.E., Pichon, M., Dinesen, Z., Brunner, R., Eyal, G., González-Zapata, F.L., Kahng, S.E., Latijnhouwers, K.R.W., Muir, P., Radice, V.Z., Sánchez, J.A., Vermeij, M.J.A., Hoegh-Guldberg, O., Jacobs, S.J., and Bongaerts, P. (2023) Global phylogenomic assessment of Leptoseris and Agaricia reveals substantial undescribed diversity at mesophotic depths. BMC Biology, 21. 147.

Pérez-Rosales, Gonzalo, Pichon, Michel, Rouzé, Héloïse, Villéger, Sébastien, Torda, Gergely, Bongaerts, Pim, Carlot, Jérémy, Under The Pole Consortium, Parravicini, Valeriano, and Hédouin, Laetitia (2022) Mesophotic coral ecosystems of French Polynesia are hotspots of alpha and beta generic diversity for scleractinian assemblages. Diversity and Distributions, 28 (7). pp. 1391-1403.

Perez-Rosales, Gonzalo, Hernandez-Agreda, Alejandra, Bongaerts, Pim, Rouze, Heloise, Pichon, Michel, Carlot, Jeremy, Torda, Gergely, Under The Pole Consortium, Parravicini, Valeriano, and Hedouin, Laetitia (2022) Mesophotic depths hide high coral cover communities in French Polynesia. Science of the Total Environment, 844. 157049.

Perez-Rosales, Gonzalo, Rouze, Heloise, Torda, Gergely, Bongaerts, Pim, Pichon, Michel, Parravicini, Valeriano, and Hedouin, Laetitia (2021) Mesophotic coral communities escape thermal coral bleaching in French Polynesia. Royal Society Open Science, 8 (11). 20139.

Bongaerts, Pim, Cooke, Ira R., Ying, Hua, Wels, Dagmar, den Haan, Stijn, Hernandez-Agreda, Alejandra, Brunner, Christopher A., Dove, Sophie, Englebert, Norbert, Eyal, Gal, Foret, Sylvain, Grinblat, Mila, Hay, Kyra B., Harii, Saki, Hayward, David C., Lin, Yu, Morana, Mihaljevi C., Moya, Aurelie, Muir, Paul, Sinniger, Frederic, Smallhorn-West, Patrick, Torda, Gergely, Ragan, Mark A., van Oppen, Madeleine J.M., and Hoegh-Guldberg, Ove (2021) Morphological stasis masks ecologically divergent coral species on tropical reefs. Current Biology, 31 (11). 2286-2298.e8.

Rouze, Heloise, Galand, Pierre E., Medina, Monica, Bongaerts, Pim, Pichon, Michel, Perez-Rosales, Gonzalo, Torda, Gergely, Moya, Aurelie, Raina, Jean-Baptiste, Hedouin, Laetitia, and UNSPECIFIED (2021) Symbiotic associations of the deepest recorded photosynthetic scleractinian coral (172 m depth). ISME Journal: multidisciplinary journal of microbial ecology, 15 (5). pp. 1564-1568.

Cooke, Ira, Ying, Hua, Forêt, Sylvain, Bongaerts, Pim, Strugnell, Jan M., Simakov, Oleg, Zhang, Jia, Field, Matt A., Rodriguez-Lanetty, Mauricio, Bell, Sara C., Bourne, David G., van Oppen, Madeleine J.H., Ragan, Mark A., and Miller, David J. (2020) Genomic signatures in the coral holobiont reveal host adaptations driven by Holocene climate change and reef specific symbionts. Science Advances, 6 (48). eabc6318.

Hernandez-Agreda, Alejandra, Leggat, William, Bongaerts, Pim, and Ainsworth, Tracy D. (2016) The microbial signature provides insight into the mechanistic basis of coral success across reef habitats. mBio, 7 (4). e00560-16. pp. 1-10.

Muir, Paul, Wallace, Carden, Bridge, Tom C.L., and Bongaerts, Pim (2015) Diverse staghorn coral fauna on the mesophotic reefs of North-East Australia. PLoS ONE, 10 (2). e0117933. pp. 1-17.

Ainsworth, Tracy D., Krause, Lutz, Bridge, Thomas, Torda, Gergely, Raina, Jean-Baptiste, Zakrzewski, Martha, Gates, Ruth D., Padilla-Gamino, Jacqueline L., Spalding, Heather L., Smith, Celia, Woolsey, Erika S., Bourne, David G., Bongaerts, Pim, Hoegh-Guldberg, Ove, and Leggat, Bill (2015) The coral core microbiome identifies rare bacterial taxa as ubiquitous endosymbionts. ISME Journal: multidisciplinary journal of microbial ecology, 9. pp. 2261-2274.

Bongaerts, P., Muir, P., Englebert, N., Bridge, T.C.L., and Hoegh-Guldberg, O. (2013) Cyclone damage at mesophotic depths on Myrmidon Reef (GBR). Coral Reefs, 32 (4). p. 935.

Bridge, Tom C.L., Hughes, Terry P., Guinotte, John M., and Bongaerts, Pim (2013) Call to protect all coral reefs. Nature Climate Change, 3. pp. 528-530.

Foster, Ralph, Bridge, Thomas, and Bongaerts, Pim (2012) The first record of Hippocampus denise (Syngnathidae) from Australia. Aqua: International Journal of Ichthyology, 18 (1). pp. 55-57.

Bongaerts, Pim, Sampayo, Eugenia M., Bridge, Thomas C.L., Ridgway, Tyrone, Vermeulen, Francisca, Englebert, Norbert, Webster, Jody M., and Hoegh-Guldberg, Ove (2011) Symbiodinium diversity in mesophotic coral communities on the Great Barrier Reef: a first assessment. Marine Ecology Progress Series, 439. pp. 117-126.

Bongaerts, Pim, Riginos, Cynthia, Ridgway, Tyrone, Sampayo, Eugenia M., van Oppen, Madeline J.H., Englebert, Norbert, Vermeulen, Francisca, and Hoegh-Guldberg, Ove (2010) Genetic divergence across habitats in the widespread coral Seriatopora hystrix and its associated Symbiodinium. PLoS ONE, 5 (5). e10871. pp. 1-11.