Timmiss, Libby A., Martin, John M., Murray, Nicholas J., Welbergen, Justin A., Westcott, David, McKeown, Adam, and Kingsford, Richard T. (2020) Threatened but not conserved: flying-fox roosting and foraging habitat in Australia. Australian Journal of Zoology, 68 (6). pp. 226-233.

Edson, Daniel, Field, Hume, McMichael, Lee, Mayer, David, Martin, John, Welbergen, Justin, McLaughlin, Amanda, Huth, Lauren, Kristoffersen, Joanna, Tsoukalas, George, and Kirkland, Peter (2018) Hematology, plasma biochemistry, and urinalysis of free-ranging grey-headed flying foxes (Pteropus poliocephalus) in Australia. Journal of Zoo and Wildlife Medicine, 49 (3). pp. 591-598.

Meade, Jessica, VanDerWal, Jeremy, Storlie, Collin, Williams, Stephen, Gourret, Arnaud, Krockenberger, Andrew, and Welbergen, Justin A. (2018) Substantial reduction in thermo-suitable microhabitat for a rainforest marsupial under climate change. Biology Letters, 14 (12).

Dalziell, Anastasia H., Welbergen, Justin A., Igic, Branislav, and Magrath, Robert D. (2015) Avian vocal mimicry: a unified conceptual framework. Biological Reviews, 90 (2). pp. 643-668.

Welbergen, Justin, Meade, Jessica, Storlie, Collin, Vanderwal, Jeremy, Dalziell, Anastasia, Hodgson, Lauren, Krockenberger, Andrew, and Williams, Stephen (2015) Climate change and the impacts of extreme events on Australia's Wet Tropics biodiversity. Report. Reef and Rainforest Research Centre, Cairns, QLD, Australia.

Keppel, Gunnar, Mokany, Karel, Wardell-Johnson, Grant W., Phillips, Ben L., Welbergen, Justin A., and Reside, April E. (2015) The capacity of refugia for conservation planning under climate change. Frontiers in Ecology and the Environment, 13 (2). pp. 106-112.

Reside, April E., Welbergen, Justin A., Phillips, Ben L., Wardell-Johnson, Grant W., Keppel, Gunnar, Ferrier, Simon, Williams, Stephen E., and Vanderwal, Jeremy (2014) Characteristics of climate change refugia for Australian biodiversity. Austral Ecology, 39 (8). pp. 887-897.

Franklin, Donald C., and Welbergen, Justin A. (2014) The sensitivity of Australian birds to climate change. In: Garnett, Stephen T., and Franklin, Donald C., (eds.) Climate Change Adaptation Plan for Australian Birds. CSIRO Publishing, Collingwood, VIC, Australia, pp. 27-39.

Storlie, Collin, Merino-Viteri, Andres, Phillips, Ben, VanDerWal, Jeremy, Welbergen, Justin, and Williams, Stephen (2014) Stepping inside the niche: microclimate data are critical for accurate assessment of species' vulnerability to climate change. Biology Letters, 10 (9). 20140576. pp. 1-4.

Warren, R., VanDerWal, J. , Price, J., Welbergen, J.A., Atkinson, I., Ramirez-Villegas, J., Osborn, T.J., Jarvis, A., Shoo, L.P., Williams, S.E., and Lowe, J. (2013) Quantifying the benefit of early climate change mitigation in avoiding biodiversity loss. Nature Climate Change, 3. pp. 678-682.

Garnett, Stephen T., Franklin, Donal C., Ehmke, Glenn, VanDerWal, Jeremy J., Hodgson, Lauren, Pavey, Chris, Reside, April E., Welbergen, Justin A., Butchart, Stuart G.M., Perkins, Genevieve C., and Williams, Stephen E. (2013) Climate Change Adaptation Strategies for Australian Birds. National Climate Change Adaptation Research Facility, Gold Coast, QLD, Australia.

Reside, April E., VanDerWal, Jeremy, Phillips, Ben L., Shoo, Luke P., Rosauer, Dan F., Anderson, Barbara, Welbergen, Justin A., Moritz, Craig, Ferrier, Simon, Harwood, Thomas D., Williams, Kristen J., Mackey, Brendan, Hugh, Sonia, and Williams, Stephen E. (2013) Climate Change Refugia for Terrestrial Biodiversity: defining areas that promote species persistence and ecosystem resilience in the face of global climate change. National Climate Change Adaptation Research Facility, Gold Coast, QLD, Australia.

Brooke, M. de L., Flower, T.P., Campbell, E.M., Mainwaring, M.C., Davies, S., and Welbergen, J.A. (2012) Rainfall-related population growth and adult sex ratio change in the Critically endangered Raso lark (Alauda razae). Animal Conservation, 15 (5). pp. 466-471.

Welbergen, Justin A., and Davies, Nicholas B. (2012) Direct and indirect assessment of parasitism risk by a cuckoo host. Behavioral Ecology, 23 (4). pp. 783-789.

Feeney, William E., Welbergen, Justin A., and Langmore, Naomi E. (2012) The frontline of avian brood parasite-host coevolution. Animal Behaviour, 84 (1). pp. 3-12.

Welbergen, Justin A. (2011) Fit females and fat polygynous males: seasonal body mass changes in the grey-headed flying fox. Oecologia, 165 (3). pp. 629-637.

Welbergen, Justin A., and Davies, Nicholas B. (2011) A parasite in wolf's clothing: hawk mimicry reduces mobbing of cuckoos by hosts. Behavioral Ecology, 22 (3). pp. 574-579.

Welbergen, Justin, Williams, Stephen, and Goosem, Stephen (2011) Gap Analysis of Environmental Research Needs in the Australian Wet Tropics. Report. UNSPECIFIED. (Unpublished)