Shen, Xueyan, Hu, Jie, Yáñez, José M., Bastos Gomes, Giana, Poon, Zhi Weng Josiah, Foster, Derick, Alarcon, Jorge F., Shao, Libin, Guo, Xinyu, Shao, Yunchang, Huerlimann, Roger, Li, Chengze, Goulden, Evan, Anderson, Kelli, Fan, Guangyi, and Domingos, Jose A. (2024) Exploring the cobia (Rachycentron canadum) genome: unveiling putative male heterogametic regions and identification of sex-specific markers. GigaScience, 13. giae034.

Chew, Xian Zhe, Carrai, Maura, Shen, Xueyan, and Gibson-Kueh, Susan (2024) Impact of transport conditions and underlying disease on post-stocking survival of juvenile Lates calcarifer. Journal of Fish Diseases, 47 (8). e13963.

Shen, Xueyan, Yáñez, José M., Gomes, Giana, Poon, Zhi Weng Josiah, Foster, Derick, Alarcon, Jorge, and Domingos, Jose A. (2023) Comparative gonad transcriptome analysis in cobia (Rachycentron canadum). Frontiers in Genetics, 14. 1128943.

Chew, Xian Zhe, Gibson-Kueh, Susan, Jerry, Dean R., and Shen, Xueyan (2023) Comparison of intestinal bacterial communities in asymptomatic and diseased Asian seabass (Lates calcarifer) with chronic enteritis and mixed bacterial infections. Aquaculture, 572. 739516.

Shen, Xueyan, Niu, Yong Chao, Uichanco, Joseph Angelo V., Phua, Norman, Bhandare, Pranjali, Thevasagayam, Natascha May, Prakki, Sai Rama Sridatta, and Orbán, László (2023) Mapping of a major QTL for increased robustness and detection of genome assembly errors in Asian seabass (Lates calcarifer). BMC Genomics, 24. 449.

Poon, Zhi Weng Josiah, Shen, Xueyan, Angelo, Joseph, Terence, Celestine, Chua, Shi Wei Gavin, and Domingos, Jose A. (2022) Comparative transcriptome analysis reveals factors involved in the influence of dietary astaxanthin on body colouration of Malabar Snapper (Lutjanus malabaricus). Aquaculture, 562. 738874.

Gibson-Kueh, Susan, Terence, Celestine, Chew, Xian Zhe, Uichanco, Joseph Angelo, and Shen, Xueyan (2021) PCR, in-situ hybridization, and phylogenetic analysis suggest that ‘big belly’ disease in barramundi, Lates calcarifer (Bloch), is caused by a novel Vibrio species. Journal of Fish Diseases, 44 (12). pp. 1985-1992.

Domingos, Jose A., Shen, Xueyan, Terence, Celestine, Senapin, Saengchan, Dong, Ha Thanh, Tan, Marie R., Gibson-Kueh, Susan, and Jerry, Dean R. (2021) Scale Drop Disease Virus (SDDV) and Lates calcarifer Herpes Virus (LCHV) coinfection downregulate immune-relevant pathways and cause splenic and kidney necrosis in barramundi under commercial farming conditions. Frontiers in Genetics, 12. 666897.

Orbán, László, Shen, Xueyan, Phua, Norman, and Varga, László (2021) Toward genome-based selection in Asian seabass: what can we learn from other food fishes and farm animals? Frontiers in Genetics, 12. 506754.

Vij, Shubha, Kuhl, Heiner, Kuznetsova, Inna S., Komissarov, Aleksey, Yurchenko, Andrey A., Van Heusden, Peter, Singh, Siddharth, Thevasagayam, Natascha M., Prakki, Sai Rama Sridatta, Purushothaman, Kathiresan, Saju, Jolly M., Jiang, Junhui, Mbandi, Stanley Kimbung, Jonas, Mario, Hin Yan Tong, Amy, Mwangi, Sarah, Lau, Doreen, Ngoh, Si Yan, Liew, Woei Chang, Shen, Xueyan, Hon, Lawrence S., Drake, James P., Boitano, Matthew, Hall, Richard, Chin, Chen-Shan, Lachumanan, Ramkumar, Korlach, Jonas, Trifonov, Vladimir, Kabilov, Marsel, Tupikin, Alexey, Green, Darrell, Moxon, Simon, Garvin, Tyler, Sedlazeck, Fritz J., Vurture, Gregory W., Gopalapillai, Gopikrishna, Kumar Katneni, Vinaya, Noble, Tansyn H., Scaria, Vinod, Sivasubbu, Sridhar, Jerry, Dean R., O'Brien, Stephen J., Schatz, Michael C., Dalmay, Tamás, Turner, Stephen W., Lok, Si, Christoffels, Alan, and Orbán, László (2016) Chromosomal-level assembly of the Asian seabass genome using long sequence reads and multi-layered scaffolding. PLoS Genetics, 12 (4). pp. 1-35.

Shen, Xueyan, Ngoh, Si Yan, Thevasagayam, Natascha May, Prakki, Sai Rama Sridatta, Bhandare, Pranjali, Tan, Andy Wee Kiat, Tan, Gui Quan, Singh, Siddharth, Phua, Norman Chun Han, Vij, Shubna, and Orbán, László (2016) BAC-pool sequencing and analysis confirms growth-associated QTLs in the Asian seabass genome. Scientific Reports, 6. 36647.

Li, Jia, Bian, Chao, Hu, Yinchang, Mu, Xidong, Shen, Xueyan, Ravi, Vydianathan, Kuznetsova, Inna S., Sun, Ying, Xinxin, You, Qui, Ying, Zhang, Xinhui, Yu, Hui, Huang, Yu, Xu, Pao, Gu, Ruobo, Xu, Junmin, Orban, Laszlo, Venkatesh, Byrappa, and Shi, Qiong (2016) A chromosomelevel genome assembly of the Asian arowana, Scleropages formosus. Scientific Data, 3. 160105.