Fulford, Thomas S., Van, Huy, Gherardin, Nicholas A., Zheng, Shuning, Ciula, Marcin, Drummer, Heidi E., Redmond, Samuel, Tan, Hyon-Xhi, Boo, Irene, Center, Rob J., Li, Fan, Grimley, Samantha L., Wines, Bruce D., Nguyen, Thi H.O., Mordant, Francesca L., Ellenberg, Paula, Rowntree, Louise C., Kedzierski, Lukasz, Cheng, Allen C., Doolan, Denise L., Matthews, Gail, Bond, Katherine, Hogarth, P. Mark, McQuilten, Zoe, Subbarao, Kanta, Kedzierska, Katherine, Juno, Jennifer A., Wheatley, Adam K., Kent, Stephen J., Williamson, Deborah A., Purcell, Damian F.J., Anderson, David A., and Godfrey, Dale I. (2021) A point-of-care lateral flow assay for neutralising antibodies against SARS-CoV-2. EBioMedicine, 74. p. 103729.

Nguyen, Thi H.O., Rowntree, Louise C., Petersen, Jan, Chua, Brendon Y., Hensen, Luca, Kedzierski, Lukasz, van de Sandt, Carolien E., Chaurasia, Priyanka, Tan, Hyon Xhi, Habel, Jennifer R., Zhang, Wuji, Allen, Lilith F., Earnest, Linda, Mak, Kai Yan, Juno, Jennifer A., Wragg, Kathleen, Mordant, Francesca L., Amanat, Fatima, Krammer, Florian, Mifsud, Nicole A., Doolan, Denise L., Flanagan, Katie L., Sonda, Sabrina, Kaur, Jasveen, Wakim, Linda M., Westall, Glen P., James, Fiona, Mouhtouris, Effie, Gordon, Claire L., Holmes, Natasha E., Smibert, Olivia C., Trubiano, Jason A., Cheng, Allen C., Harcourt, Peter, Clifton, Patrick, Crawford, Jeremy Chase, Thomas, Paul G., Wheatley, Adam K., Kent, Stephen J., Rossjohn, Jamie, Torresi, Joseph, and Kedzierska, Katherine (2021) CD8+ T cells specific for an immunodominant SARS-CoV-2 nucleocapsid epitope display high naive precursor frequency and TCR promiscuity. Immunity, 54 (5). 1066-1082.e5.

Koutsakos, Marios, Rowntree, Louise C., Hensen, Luca, Chua, Brendon Y., Van De Sandt, Carolien E., Habel, Jennifer R., Zhang, Wuji, Jia, Xiaoxiao, Kedzierski, Lukasz, Ashhurst, Thomas M., Putri, Givanna H., Marsh-Wakefield, Felix, Read, Mark N., Edwards, Davis N., Clemens, E. Bridie, Wong, Chinn Yi, Mordant, Francesca L., Juno, Jennifer A., Amanat, Fatima, Audsley, Jennifer, Holmes, Natasha E., Gordon, Claire L., Smibert, Olivia C., Trubiano, Jason A., Hughes, Carly M., Catton, Mike, Denholm, Justin T., Tong, Steven Y.C., Doolan, Denise L., Kotsimbos, Tom C., Jackson, David C., Krammer, Florian, Godfrey, Dale I., Chung, Amy W., King, Nicholas J.C., Lewin, Sharon R., Wheatley, Adam K., Kent, Stephen J., Subbarao, Kanta, McMahon, James, Thevarajan, Irani, Nguyen, Thi H.O., Cheng, Allen C., and Kedzierska, Katherine (2021) Integrated immune dynamics define correlates of COVID-19 severity and antibody responses. Cell Reports Medicine, 2 (3). 100208.

Rowntree, Louise C., Chua, Brendon Y., Nicholson, Suellen, Koutsakos, Marios, Hensen, Luca, Douros, Celia, Selva, Kevin, Mordant, Francesca L., Wong, Chinn Yi, Habel, Jennifer R., Zhang, Wuji, Xiaoxiao, Jia, Allen, Lily, Doolan, Denise L., Jackson, David C., Wheatley, Adam K., Kent, Stephen J., Amanat, Fatima, Krammer, Florian, Subbarao, Kanta, Cheng, Allen C., Chung, Amy W., Catton, Mike, Nguyen, Thi Ho, Sandt, Carolien E., and Kedzierska, Katherine (2021) Robust correlations across six SARS-CoV-2 serology assays detecting distinct antibody features. Clinical & Translational Immunology, 10. e1258.

Selva, Kevin J., Van De Sandt, Carolien E., Lemke, Melissa M., Lee, Christina Y., Shoffner, Suzanne K., Chua, Brendon Y., Davis, Samantha K., Nguyen, Thi, Rowntree, Louise, Hensen, Luca, Koutsakos, Marios, Wong, Chinn Yi, Mordant, Francesca, Jackson, David C., Flanagan, Katie L., Crowe, Jane, Tosif, Shidan, Neeland, Melanie R., Sutton, Philip, Licciardi, Paul V., Crawford, Nigel W., Cheng, Allen C., Doolan, Denise L., Amanat, Fatima, Krammer, Florian, Chappell, Keith, Modhiran, Naphak, Watterson, Daniel, Young, Paul, Lee, Wen Shi, Wines, Bruce D., Hogarth, P. Mark, Esterbauer, Robyn, Kelly, Hannah G., Tan, Hyon-Xhi, Juno, Jennifer A., Wheatley, Adam K., Kent, Stephen J., Arnold, Kelly B., Kedzierska, Katherine, and Chung, Amy W. (2021) Systems serology detects functionally distinct coronavirus antibody features in children and elderly. Nature Communications, 12. 2037.

Trauer, James M., Lydeamore, Michael J., Dalton, Gregory W., Pilcher, David, Meehan, Michael T., McBryde, Emma S., Cheng, Allen C., Sutton, Brett, and Ragonnet, Romain (2021) Understanding how Victoria, Australia gained control of its second COVID-19 wave. Nature Communications, 12. 6266.

Hilbig, Adelene, and Cheng, Allen (2020) Infective endocarditis in the intravenous drug use population at a tertiary hospital in Melbourne, Australia. Heart, Lung and Circulation, 29 (2). pp. 246-253.

Habel, Jennifer H., Nguyen, Thi H.O., van de Sandt, Carolien E., Juno, Jennifer A., Chaurasia, Priyanka, Wragg, Kathleen, Koutsakos, Marios, Hensen, Luca, Jia, Xiaoxiao, Chua, Brendon, Zhang, Wuji, Tan, Hyon-Xhi, Flanagan, Katie L., Doolan, Denise L., Torresi, Joseph, Chen, Weisan, Wakim, Linda M., Cheng, Allen C., Doherty, Peter C., Petersen, Jan, Rossjohn, Jamie, Wheatley, Adam K., Kent, Stephen J., Rowntree, Louise C., and Kedzierska, Katherine (2020) Suboptimal SARS-CoV-2-specific CD8(+) T cell response associated with the prominent HLA-A*02:01 phenotype. Proceedings of the National Academy of Sciences of the United States of America, 117 (39). pp. 24384-24391.

Kearns, Thérèse M., Speare, Richard, Cheng, Allen C., McCarthy, James, Carapetis, Jonathan R., Holt, Deborah C., Currie, Bart J., Page, Wendy, Shield, Jennifer, Gundjirryirr, Roslyn, Bundhala, Leanne, Mulholland, Eddie, Chatfield, Mark, and Andrews, Ross M. (2015) Impact of an ivermectin mass drug administration on scabies prevalence in a remote Australian Aboriginal community. PLoS Neglected Tropical Diseases, 9 (10). e0004151. pp. 1-13.

Hare, Kim M., Singleton, Rosalyn J., Grimwood, Keith, Valery, Patricia C., Cheng, Allen C., Morris, Peter S., Leach, Amanda J., Smith-Vaughan, Heidi C., Chatfield, Mark, Redding, Greg, Reasonover, Alisa L., McCallum, Gabrielle B., Chikoyak, Lori, McDonald, Malcolm, Brown, Ngiare, Torzillo, Paul J., and Chang, Anne B. (2013) Longitudinal nasopharyngeal carriage and antibiotic resistance of respiratory bacteria in indigenous Australian and Alaska native children with bronchiectasis. PLoS ONE, 8 (8). e70478. pp. 1-9.

Hare, K.M., Leach, A.J., Morris, P.S., Smith-Vaughan, H., Torzillo, P., Bauert, P., Cheng, A.C., McDonald, M.I., Brown, N., Chang, A.B., and Grimwood, K. (2012) Impact of recent antibiotics on nasopharyngeal carriage and lower airway infection in Indigenous Australian children with non-cystic fibrosis bronchiectasis. International Journal of Antimicrobial Agents, 40 (4). pp. 365-369.

Eisen, Damon P., Marshall, Caroline, Dean, Melinda M., Sasadeusz, Joe, Richards, Michael, Buising, Kirsty, Cheng, Allen, Johnson, Paul D.R., Barr, Ian G., and McBryde, Emma S. (2011) No association between mannose-binding lectin deficiency and H1N1 2009 infection observed during the first season of this novel pandemic influenza virus. Human Immunology, 72 (11). pp. 1091-1094.

Jacups, Susan, and Cheng, Allen (2011) The epidemiology of community acquired bacteremic pneumonia, due to Streptococcus pneumoniae, in the Top End of the Northern Territory, Australia—over 22 years. Vaccine, 29 (33). pp. 5386-5392.

Marshall, Caroline, Kelso, Anne, McBryde, Emma, Barr, Ian G., Eisen, Damon P., Sasadeusz, Joe, Buising, Kirsty, Cheng, Allen C., Johnson, Paul, and Richards, Michael (2011) Pandemic (H1N1) 2009 risk for frontline health care workers. Emerging Infectious Diseases, 17 (6). pp. 1000-1006.

Kelly, Paul M., Kotsimbos, Tom, Reynolds, Anna, Wood-baker, Richard, Hancox, Bob, Brown, Simon G.A., Holmes, Mark, Simpson, Graham, Bowler, Simon, Waterer, Grant, Irving, Louis B., Jenkins, Christine, Thompson, Phillip J., and Cheng, Allen C. (2011) FluCAN 2009: initial results from sentinel surveillance for adult influenza and pneumonia in eight Australian hospital. Medical Journal of Australia, 194 (4). pp. 169-174.

Richardson, Leisha J., Towers, Rebecca J., Cheng, Allen C., Currie, Bart J., Carapetis, Jonathan R., Giffard, Phillip M., and McDonald, Malcolm I. (2010) Diversity of emm sequence types in group A beta-haemolytic streptococci in two remote Northern Territory Indigenous communities: implications for vaccine development. Vaccine, 28 (32). pp. 5301-5305.

Tong, Steven Y.C., Lilliebridge, Rachael A., Bishop, Emma J., Cheng, Allen C., Holt, Deborah C., Mcdonald, Malcolm I., Giffard, Philip M., Currie, Bart J., and Boutlis, Craig S. (2010) Clinical correlates of Panton-Valentine Leukocidin (PVL), PVL isoforms, and clonal complex in the Staphylococcus aureus population of Northern Australia. Infectious Diseases, 202 (5). pp. 760-769.

Cheng, Allen C., McBryde, Emma S., Wuthiekanun, Vanaporn, Chierakul, Wirongrong, Amornchai, Premjit, Day, Nicholas P.J., White, Nicholas J., and Peacock, Sharon J. (2009) Dosing regimens of cotrimoxazole (trimethoprim-sulfamethoxazole) for melioidosis. Antimicrobial Agents and Chemotherapy, 53 (10). pp. 4193-4199.

Tong, Steven Y.C., Bishop, Emma J., Lilliebridge, Rachael A., Cheng, Allen C., Spasova-Penkova, Zornitsa, Holt, Deborah C., Giffard, Philip M., McDonald, Malcolm, Currie, Bart J., and Boutlis, Craig S. (2009) Community-associated strains of methicillin-resistant Staphylococcus aureus and methicillin-susceptible S. aureus in Indigenous Northern Australia: epidemiology and outcomes. Journal of Infectious Diseases, 199 (10). pp. 1461-1470.

Cheng, Allen C., Jacups, Susan P., Ward, Linda, and Currie, Bart J. (2008) Melioidosis and Aboriginal seasons in northern Australia. Transactions of the Royal Society of Tropical Medicine and Hygiene, 102 (S1). S26-S29.

Eisen, Damon P., Cheng, Allen C., and McBryde, Emma S. (2007) Letters to the editor. Surgical Infections, 8 (1). pp. 121-122.