Kingsford, M. J., and Mckinnon, A. D. (2019) Plankton. In: Hutchings, Pat, Kingsford, Michael, and Hoegh-Guldberg, Ove, (eds.) Great Barrier Reef: Biology, Environment and Management. CSIRO Publishing, Clayton South, VIC, Australia, pp. 191-206.

Suárez-Morales, Eduardo, and McKinnon, David (2016) The Australian Monstrilloida (crustacea: Copepoda) II. Cymbasoma Thompson, 1888. Zootaxa, 4102 (1). pp. 1-129.

Davies, Claire H., Coughlan, Alex, Hallegraeff, Gustaaf, Ajani, Penelope, Armbrecht, Linda, Atkins, Natalia, Bonham, Prudence, Brett, Steve, Brinkman, Richard, Burford, Michele, Clementson, Lesley, Coad, Peter, Coman, Frank, Davies, Diana, Dela-Cruz, Jocelyn, Devlin, Michelle, Edgar, Steven, Eriksen, Ruth, Furnas, Miles, Hassler, Christel, Hill, David, Holmes, Michael, Ingleton, Tim, Jameson, Ian, Leterme, Sophie C., Lønborg, Christian, McLaughlin, James, McEnnulty, Felicity, Mckinnon, A. David, Miller, Margaret, Murray, Shauna, Nayar, Sasi, Patten, Renee, Pritchard, Tim, Proctor, Roger, Purcell-Meyerink, Diane, Raes, Eric, Rissik, David, Ruszczyk, Jason, Slotwinski, Anita, Swadling, Kerrie M., Tattersall, Katherine, Thompson, Peter, Thomson, Paul, Tonks, Mark, Trull, Thomas W., Uribe-Palomino, Julian, Waite, Anya M., Yauwenas, Rouna, Zammit, Anthony, and Richardson, Anthony J. (2016) A database of marine phytoplankton abundance, biomass and species composition in Australian waters. Scientific Data, 3. 160043. pp. 1-12.

McKinnon, A. David, Doyle, Jason, Duggan, Samantha, Logan, Murray, Lønborg, Christian, and Brinkman, Richard (2015) Zooplankton growth, respiration and grazing on the Australian margins of the tropical Indian and Pacific Oceans. PLoS ONE, 10 (10). e0140012.

McKinnon, A.D., Duggan, S., Holliday, D., and Brinkman, R. (2015) Plankton community structure and connectivity in the Kimberley-Browse region of NW Australia. Estuarine, Coastal and Shelf Science , 153. pp. 156-167.

Alongi, Daniel, Patten, Nicole E., Mckinnon, David, Köstner, Nicole, Bourne, David G., and Brinkman, Richard (2015) Phytoplankton, bacterioplankton and virioplankton structure and function across the southern Great Barrier Reef shelf. Journal of Marine Systems, 142. pp. 25-39.

Suárez-Morales, Eduardo, and McKinnon, A. David (2014) The Australian Monstrilloida (Crustacea: Copepoda) I. Monstrillopsis Sars, Maemonstrilla Grygier & Ohtsuka, and Australomonstrillopsis gen. nov. Zootaxa, 3779 (3). pp. 301-340.

Zamora-Terol, Sara, Mckinnon, A. David, and Saiz, Enric (2014) Feeding and egg production of Oithona spp. in tropical waters of North Queensland, Australia. Journal of Plankton Research, 36 (4). pp. 1047-1059.

Ceccarelli, Daniela M., McKinnon, A. David, Andréfouët, Serge, Allain, Valerie, Young, Jock, Gledhill, Daniel C., Flynn, Adrian, Bax, Nicholas J., Beaman, Robin, Borsa, Philippe, Brinkman, Richard, Bustamante, Rodrigo H., Campbell, Robert, Cappo, Mike, Cravatte, Sophie, D'Agata, Stéphanie, Dichmont, Catherine M., Dunstan, Piers K., Dupouy, Cécile, Edgar, Graham, Farman, Richard, Furnas, Miles, Garrigue, Claire, Hutton, Trevor, Kulbicki, Michel, Letourneur, Yves, Lindsay, Dhugal, Menkes, Christophe, Mouillot, David, Parravicini, Valeriano, Payri, Claude, Pelletier, Bernard, Richer de Forges, Bertrand, Ridgway, Ken, Rodier, Martine, Samadi, Sarah, Schoeman, David, Skewes, Tim, Swearer, Steven, Vigliola, Laurent, Wantiez, Laurent, Williams, Alan, Williams, Ashley, and Richardson, Anthony J. (2013) The Coral Sea: physical environment, ecosystem status and biodiversity assets. In: Lesser, Michael, (ed.) Advances in Marine Biology. Advances in Marine Biology, 66 . Elsevier, Amsterdam, The Netherlands, pp. 213-290.

Castine, Sarah A., McKinnon, A. David, Paul, Nicholas A., Trott, Lindsay A., and de Nys, Rocky (2013) Wastewater treatment for land-based aquaculture: improvements and value-adding alternatives in model systems from Australia. Aquaculture Environment Interactions, 4 (3). pp. 285-300.

Young, Jock W., McKinnon, A. David, Ceccarelli, Daniela, Brinkman, Richard, Bustamante, Rodrigo H., Cappo, Mike, Dichmont, Cathy, Doherty, Peter, Furnas, Miles, Gledhill, Daniel, Griffiths, Shane, Hutton, Trevor, Ridgway, Ken, Smith, David, Skewes, Tim, Williams, Alan, and Richardson, Anthony J. (2012) Workshop on the ecosystem and fisheries of the Coral Sea: an Australian perspective on research and management. Reviews in Fish Biology and Fisheries, 22 (3). pp. 827-834.

Gusmão, Luiz Felipe Mendes, and Mckinnon, A. David (2011) Nucleic acid indices of egg production in the tropical copepod Acartia sinjiensis. Journal of Experimental Marine Biology and Ecology, 396 (2). pp. 122-137.

Camus, Thomas, Zeng, Chaoshu, and McKinnon, A. David (2009) Egg production, egg hatching success and population increase of the tropical paracalanid copepod, Bestiolina similis (Calanoida: Paracalanidae) fed different microalgal diets. Aquaculture, 297 (1). pp. 169-175.

Gusmão, Luiz Felipe Mendes, and McKinnon, A. David (2009) The effect of food type and quantity on egg production and nucleic acid content of Acartia sinjiensis. Aquaculture, 296 (1-2). pp. 71-80.

Gusmão, Luiz Felipe Mendes, and McKinnon, A. David (2009) Acrocalanus gracilis (Copepoda: Calanoida) development and production in the Timor Sea. Journal of Plankton Research, 31 (9). pp. 1089-1100.

Gusmão, Luiz Felipe Mendes, and McKinnon, A. David (2009) Sex ratios, intersexuality and sex change in copepods. Journal of Plankton Research, 31 (9). pp. 1101-1117.

Howard, W., de Salas, M, Cheal, A., Lough, J., McKinnon, D., Meekan, M., Sweatman, H., Coleman, M., Chambers, L., Dunlop, N., Church, J., Dowdney, J., Feng, M., Griffiths, S., Hemer, M., Hobday, A., Mapstone, B., Matear, R., Poloczanska, E., Richardson, A., Ridgway, K., Risbey, J., Thompson, P., Thresher, R., Weller, E., Saintilan, N., Wilson, S., Lenanton, R., Hosja, W., Moore, P., Wernberg, T., Marshall, P., Connolly, R., McDonald, J., Hill, K., Congdon, B, Devney, C., Fuentes, M., Graham, N., Hamann, M., Hughes, T., Kingsford, M., Munday, P., Pratchett, M., Sheaves, M., Goodwin, I., Raftos, D., Williamson, J., Beardall, J., Brett, S., Waschka, M., Dann, P., Ward, T., Edgar, G., Swadling, K., Connell, S., Russell, B., Lukoschek, V., Havenhand, J., McGregor, S., Jenkins, G., Campbell, A., Steinberg, P., Anthony, K., Lovelock, C., Skilleter, G., Figueira, W., Davidson, J., Hallegraeff, G., Holbrook, N., Booth, D., Doblin, M., Kendrick, G., Smale, D., Parker, L., and Ross, P. (2009) Marine Climate Change in Australia: impacts and adaptation responses: 2009 report card. Report. National Climate Change Adaptation Research Facility (NCCARF).

Castine, Sarah A., Bourne, David G., Trott, Lindsay A., and Mckinnon, David A. (2009) Sediment microbial community analysis: establishing impacts of aquaculture on a tropical mangrove ecosystem. Aquaculture, 297 (1-4). pp. 91-98.

Kingsford, M.J., Heimann, K., Alexander, C.G., and McKinnon, A.D. (2008) Plankton. In: Hutchings, Pat, Kingsford, Mike, and Hoegh-Guldberg, Ove, (eds.) The Great Barrier Reef: biology, environment and management. CSIRO Publishing, Collingwood, VIC, Australia, pp. 129-144.

Sampey, A., McKinnon, A.D., Meekan, M.G., and McCormick, M.I. (2007) Glimpse into guts: overview of the feeding of larvae of tropical shorefishes. Marine Ecology Progress Series, 339. pp. 243-257.

Meekan, M.G., Carleton, J.H., Steinberg, C.R., McKinnon, A.D., Brinkman, R., Doherty, P.J., Halford, A., Duggan, S., and Mason, L. (2006) Turbulent mixing and mesoscale distributions of late-stage fish larvae on the NW shelf of Western Australia. Fisheries Oceanography, 15 (1). pp. 44-59.

Wolanski, Eric, McKinnon, A. David, Williams, David, and Alongi, Daniel M. (2006) An estuarine ecohydrology model of Darwin Harbour, Australia. In: Wolanski, Eric, (ed.) The Environment in Asia Pacific Harbours. Springer, Netherlands, pp. 477-488.

Sampey, A., Meekan, M.G., Carleton, J.H., McKinnon, A.D., and McCormick, M.I. (2004) Temporal patterns in distributions of tropical fish larvae on the North West Shelf of Australia. Marine and Freshwater Research, 55 (5). pp. 473-487.

McKinnon, A.D., Duggan, S., Nichols, P.D., Rimmer, M.A., Semmens, G., and Robino, B. (2003) The potential of tropical paracalanid copepods as live feeds in aquaculture. Aquaculture, 223 (1-4). pp. 89-106.