Dibattista, Joseph D., Saenz-agudelo, Pablo, Piatek, Marek J., Cagua, Edgar Fernando, Bowen, Brian W., Choat, John Howard, Rocha, Luiz A., Gaither, Michelle R., Hobbs, Jean-Paul A., Sinclair-taylor, Tane H., McIlwain, Jennifer H., Priest, Mark A., Braun, Camrin D., Hussey, Nigel E., Kessel, Steven T., and Berumen, Michael L. (2020) Population genomic response to geographic gradients by widespread and endemic fishes of the Arabian Peninsula. Ecology and Evolution, 10 (10). pp. 4314-4330.

Saenz-Agudelo, Pablo, Dibattista, Joseph D., Piatek, Marek J., Gaither, Michelle R., Harrison, Hugo B., Nanninga, Gerrit B., and Berumen, Michael L. (2015) Seascape genetics along environmental gradients in the Arabian Peninsula: insights from ddRAD sequencing of anemonefishes. Molecular Ecology, 24 (24). pp. 6241-6255.

Gaither, Michelle R., Schultz, Jennifer K., Bellwood, David R., Pyle, Richard L., DiBattista, Joseph D., Rocha, Luiz A., and Bowen, Brian W. (2014) Evolution of pygmy angelfishes: recent divergences, introgression, and the usefulness of color in taxonomy. Molecular Phylogenetics and Evolution, 74. pp. 38-47.

DiBattista, Joseph D., Berumen, Michael L., Gaither, Michelle R., Rocha, Luiz A., Eble, Jeff A., Choat, J. Howard, Craig, Matthew, Skillings, Derek J., and Bowen, Brian W. (2013) After continents divide: comparative phylogeography of reef fishes from the Red Sea and Indian Ocean. Journal of Biogeography, 40 (6). pp. 1170-1181.

Sheppard, C.R.C., Ateweberhan, M., Bowen, B.W., Carr, P., Chen, C.A., Clubbe, C., Craig, M.T., Ebinghaus, R., Eble, J., Fitzsimmons, N., Gaither, M.R., Gan, C-H., Gollock, M., Guzman, N., Graham, N.A.J., Harris, A., Jones, R., Keshavmurthy, S., Koldewey, H., Lundin, C.G., Mortimer, J.A., Obura, D., Pfeiffer, M., Price, A.R.G., Purkis, S., Raines, P., Readman, J.W., Riegl, B., Rogers, A., Schleyer, M., Seaward, M.R.D., Sheppard, A.L.S., Tamelander, J., Turner, J.R., Visram, S., Vogler, C., Vogt, S., Wolschke, H., Yang, J. M-C., Yang, S-Y., and Yesson, C. (2012) Reefs and islands of the Chagos Archipelago, Indian Ocean: why it is the world's largest no-take marine protected area. Aquatic Conservation: marine and freshwater ecosystems , 22 (2). pp. 232-261.

Gaither, Michelle R., Bowen, Brian W., Bordenave, Tiane-Rae, Rocha, Luiz A., Newman, Stephen J., Gomez, Juan A., van Herwerden, Lynne, and Craig, Matthew T. (2011) Phylogeography of the reef fish Cephalopholis argus (Epinephelidae) indicates Pleistocene isolation across the indo-pacific barrier with contemporary overlap in the coral triangle. BMC Evolutionary Biology, 11. 189. pp. 1-15.

Gaither, Michelle R., Bowen, Brian W., Toonen, Robert J., Planes, Serge, Messmer, Vanessa, Earle, John, and Robertson, D. Ross (2010) Genetic consequences of introducing allopatric lineages of bluestriped snapper (Lutjanus kasmira) to Hawaii. Molecular Ecology, 19 (6). pp. 1107-1121.