Zhang, Jia, Richards, Zoe T., Adam, Arne A.S., Chan, Cheong Xin, Shinzato, Chuya, Gilmour, James, Thomas, Luke, Strugnell, Jan M., Miller, David J., and Cooke, Ira (2022) Evolutionary Responses of a Reef-building Coral to Climate Change at the End of the Last Glacial Maximum. Molecular Biology and Evolution, 39 (10). msac201.

Mohamed, Amin R., Cumbo, Vivian R., Harii, Saki, Shinzato, Chuya, Chan, Cheong Xin, Ragan, Mark A., Satoh, Nori, Ball, Eldon E., and Miller, David J. (2018) Deciphering the nature of the coral-Chromera association. ISME Journal: multidisciplinary journal of microbial ecology, 12 (3). pp. 776-790.

Bhattacharya, Debashish, Agrawal, Shobhit, Aranda, Manuel, Baumgarten, Sebastian, Belcaid, Mahdi, Drake, Jeana L., Erwin, Douglas, Foret, Sylvain, Gates, Ruth D., Gruber, David F., Kamel, Bishoy, Lesser, Michael P., Levy, Oren, Liew, Yi Jin, MacManes, Matthew, Mass, Tali, Medina, Monica, Mehr, Shaadi, Meyer, Eli, Price, Dana C., Putnam, Hollie M., Qiu, Huan, Shinzato, Chuya, Shoguchi, Eiichi, Stokes, Alexander J., Tambutté, Sylvie, Tchernov, Dan, Voolstra, Christian R., Wagner, Nicole, Walker, Charles W., Weber, Andreas P.M., Weis, Virginia, Zelzion, Ehud, Zoccola, Didier, and Falkowski, Paul G. (2016) Comparative genomics explains the evolutionary success of reef-forming corals. eLife, 5. e13288. pp. 1-26.

Mohamed, A.R., Cumbo, V., Harii, S., Shinzato, C., Chan, C.X., Ragan, M.A., Bourne, D.G., Willis, B.L., Ball, E.E., Satoh, N., and Miller, D.J. (2016) The transcriptomic response of the coral Acropora digitifera to a competent Symbiodinium strain: the symbiosome as an arrested early phagosome. Molecular Ecology, 25 (13). pp. 3127-3141.

Hamada, Mayuko, Shoguchi, Eiichi, Shinzato, Chuya, Kawashima, Takeshi, Miller, David J., and Satoh, Nori (2013) The complex NOD-like receptor repertoire of the coral Acropora digitifera includes novel domain combinations. Molecular Biology and Evolution, 30 (1). pp. 167-176.

Ball, Eldon E., de Jong, Danielle M., Schierwater, Bernd, Shinzato, Chuya, Hayward, David C., and Miller, David J. (2011) Cnidarian gene expression patterns and the origins of bilaterality – are cnidarians reading the same game plan as "higher" animals? In: DeSalle, Rob, and Schierwater, Bernd, (eds.) Key Transitions in Animal Evolution. Science Publishers, Enfield, NH, USA, pp. 197-216.

Shinzato, Chuya, Iguchi, Akira, Hayward, David C., Technau, Ulrich, Ball, Eldon E., and Miller, David J. (2008) Sox genes in the coral Acropora millepora: divergent expression patterns reflect differences in developmental mechanisms within the Anthozoa. BMC Evolutionary Biology, 8. .

Knack, Brent A., Iguchi, Akira, Shinzato, Chuya, Hayward, David C., Ball, Eldon E., and Miller, David J. (2008) Unexpected diversity of cnidarian integrins: expression during coral gastrulation. BMC Evolutionary Biology, 8. - .

Iguchi, Akira, Márquez, Luis M., Knack, Brent, Shinzato, Chuya, van Oppen, Madeleine J.H., Willis, Bette L., Hardie, Kate, Catmull, Julian, and Miller, David J. (2007) Apparent involvement of a β1 type integrin in coral fertilization. Marine Biotechnology, 9 (6). pp. 760-765.

Ball, Eldon E., de Jong, Danielle M., Schierwater, Bernd, Shinzato, Chuya, Hayward, David C., and Miller, David J. (2007) Implications of cnidarian gene expression patterns for the origins of bilaterality - is the glass half full or half empty? Integrative and Comparative Biology, 47. pp. 701-711.

Shinzato, Chuya (2007) Cnidarian Sox genes and the evolution of function in the Sox gene family. PhD thesis, James Cook University.