Leung, Franco Ka Wah, Schwarzkopf, Lin, and Allen-Ankins, Slade (2025) Advancing invasive species monitoring: A free tool for detecting invasive cane toads using continental-scale data. Ecological Informatics, 89. 103172.

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Abstract

Invasive species pose a significant threat to global biodiversity and ecosystem health, necessitating effective monitoring tools for early detection and management. Here, we present the development and assessment of a user-friendly and transferable monitoring tool for the invasive cane toad (Rhinella marina) using passive acoustic monitoring (PAM) and machine learning algorithms. Leveraging a continental-scale PAM dataset (Australian Acoustic Observatory), we trained a cane toad classifier using the BirdNET algorithm, a convolutional neural network architecture capable of identifying acoustic events. We validated thousands of BirdNET predictions across Australia, and our classifier achieved over 90 % accuracy even at many sites outside the areas from which the training data were obtained. Additionally, because cane toads typically call for long periods, we significantly enhanced detection accuracy by incorporating contextual information from time-series data, essentially checking if other calls occurred around each detection (an optimized threshold approach using conditional inference trees). This method substantially reduced false positives and improved overall performance in cane toad detection at sites across Australia. Overall, our method will allow others to develop accurate and precise automated acoustic monitoring tools tailored to their situation, with minimal training data, addressing the critical need for accessible solutions in biodiversity monitoring, control of invasive species and conservation.

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