Article

Liu, Qing, Sui, Zengying, Feng, Nuan, Huang, Yuhao, Li, Yonghong, Ahmed, Ishfaq, Ruethers, Thimo, Liang, Hui, Li, Zhenxing, Lopata, Andreas L., and Sun, Lirui (2024) Characterization, Epitope Confirmation, and Cross-Reactivity Analysis of Parvalbumin from Lateolabrax maculatus by Multiomics Technologies. Journal of Agricultural and Food Chemistry, 72 (36). pp. 20077-20090.

Buraphaka, Hathairat, Dobutr, Theerawat, Wiese, Michael D., Lopata, Andreas L., and Daduang, Sakda (2024) Structure-based epitope prediction and assessment of cross-reactivity of Myrmecia pilosula venom-specific IgE and recombinant Sol g proteins (Solenopsis geminata). Scientific Reports, 14. 11145.

Bose, Utpal, Broadbent, James A., Juhász, Angéla, Karnaneedi, Shaymaviswanathan, Johnston, Elecia B., Stockwell, Sally, Byrne, Keren, Limviphuvadh, Vachiranee, Maurer-Stroh, Sebastian, Lopata, Andreas L., and Colgrave, Michelle L. (2022) Comparison of protein extraction protocols and allergen mapping from black soldier fly Hermetia illucens. Journal of Proteomics, 269. 104724.

Karimi, Mohammad Reza, Karimi, Amir Hossein, Abolmaali, Shamsozoha, Mehdi, Sadeghi, and Schmitz, Ulf (2022) Prospects and challenges of cancer systems medicine: from genes to disease networks. Briefings in Bioinformatics, 23 (1). bbab343.

Greene, Austin, Leggat, William, Donahue, Megan J., Raymundo, Aurie J., Caldwell, Jamie M., Moriarty, Tess, Heron, Scott F., and Ainsworth, Tracy D. (2020) Complementary sampling methods for coral histology, metabolomics and microbiome. Methods in Ecology and Evolution, 11 (9). pp. 1012-1020.

Logan, Jayden, Pearson, Mark S., Manda, Srikanth S., Choi, Young-Jun, Field, Matthew, Eichenberger, Ramon M., Mulvenna, Jason, Nagaraj, Shivashankar H., Fujiwara, Ricardo T., Gazzinelli-Guimaraes, Pedro, Bueno, Lilian, Mati, Vitor, Bethony, Jeffrey M., Mitreva, Makedonka, Sotillo, Javier, and Loukas, Alex (2020) Comprehensive analysis of the secreted proteome of adult Necator americanus hookworms. PLoS Neglected Tropical Diseases, 14 (5). e0008237.

Caruana, Nikeisha J., Strugnell, Jan M., Faou, Pierre, Finn, Julian, and Cooke, Ira R. (2019) Comparative proteomic analysis of slime from the striped pyjama squid, Sepioloidea lineolata, and the southern bottletail squid, Sepiadarium austrinum (Cephalopoda: Sepiadariidae). Journal of Proteome Research, 18 (3). pp. 890-899.

Engholm-Keller, Kasper, Waardenberg, Ashley J., Müller, Johannes A., Wark, Jesse R., Fernando, Rowena N., Arthur, Jonathan W., Robinson, Phillip J., Dietrich, Dirk, Schoch, Susanne, Graham, Mark E., UNSPECIFIED, and UNSPECIFIED (2019) The temporal profile of activity-dependent presynaptic phospho-signalling reveals long-lasting patterns of poststimulus regulation. PLoS Biology, 17 (3). e3000170.

Nuez-Ortín, Waldo G., Carter, Chris G., Nichols, Peter D., Cooke, Ira R., and Wilson, Richard (2018) Liver proteome response of pre-harvest Atlantic salmon following exposure to elevated temperature. BMC Genomics, 19. 133.

Fingerhut, Legana C.H.W., Strugnell, Jan M., Faou, Pierre, Labiaga, Àlvaro Roura, Zhang, Jia, and Cooke, Ira R. (2018) Shotgun proteomics analysis of saliva and salivary gland tissue from the common octopus Octopus vulgaris. Journal of Proteome Research, 17 (11). pp. 3866-3876.

Dagonnier, Marie, Cooke, Ira Robin, Faou, Pierre, Sidon, Tara Kate, Dewey, Helen Margaret, Donnan, Geoffrey Alan, and Howells, David William (2017) Discovery and longitudinal evaluation of candidate biomarkers for ischaemic stroke by mass spectrometry-based proteomics. Biomarker Insights, 12.

Bottje, Walter, Kong, Byung-Whi, Reverter, Antonio, Waardenberg, Ashley J., Lassiter, Kentu, and Hudson, Nicholas J. (2017) Progesterone signalling in broiler skeletal muscle is associated with divergent feed efficiency. BMC Systems Biology, 11. 29.

Caruana, Nikeisha J., Cooke, Ira R., Faou, Pierre, Finn, Julian, Hall, Nathan E., Norman, Mark, Pineda, Sandy S., and Strugnell, Jan M. (2016) A combined proteomic and transcriptomic analysis of slime secreted by the southern bottletail squid, Sepiadarium austrinum (Cephalopoda). Journal of Proteomics, 148. pp. 170-182.

Nguyen, Vinh A., Carey, Leeanne M., Giummarra, Loretta, Faou, Pierre, Cooke, Ira, Howells, David W., Tse, Tamara, Macaulay, S. Lance, Ma, Henry, Davis, Stephen M., Donnan, Geoffrey A., and Crewther, Sheila G. (2016) A pathway proteomic profile of ischemic stroke survivors reveals innate immune dysfunction in association with mild symptoms of depression: a pilot study. Frontiers in Neurology, 7. 85. pp. 1-16.

Gupta, Shishir K., Srivastava, Mugdha, Akhoon, Bashir A., Smita, Suchi, Schmitz, Ulf, Wolkenhauer, Olaf, Vera, Julio, and Gupta, Shailendra (2011) Identification of immunogenic consensus T-cell epitopes in globally distributed influenza-A H1N1 neuraminidase. Infection, Genetics and Evolution, 11 (2). pp. 308-319.

Vera, Julio, Kwon, Taesoo, Schmitz, Ulf, Kolch, Walter, and Wolkenhauer, Olaf (2009) Exploration of homodimer receptor: homodimer protein interactions. International Journal of Bioinformatics Research and Applications, 5 (4). p. 447.

Thesis

Logan, Jayden Anthony (2019) Characterisation of Necator americanus excretory/secretory products. PhD thesis, James Cook University.